BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494595
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44010.1 | Symbols: | unknown protein; Has 28 Blast hits to... 1781 0.0
> AT5G44010.1 | Symbols: | unknown protein; Has 28 Blast hits
to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:17706965-17709199 REVERSE
LENGTH=1333
Length=1333
Score = 1781 bits (964), Expect = 0.0
Identities = 1131/1212 (93%), Gaps = 9/1212 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTGGAATTACCCAGAAATCTCCAAGGAAGATTTCATCAAA-CTATTGAAAGGAAG 59
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 1 ATGGTTTGGAATTACCCAGAAATTTCCAAGGAAGATTTCAT-AAAGCTATTGAAAGGAAG 59
Query 60 CATAAATGGTTCAGATACGTTTGGGGAATCTGTGAGAGAGCTTGACGAAGCAATATCAGA 119
||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 60 CATAAATAGTTCAGATACGTTTGGGGAATCTATGAGAGAGCTTGACGAAGCTATATCAGA 119
Query 120 TATAAAAACCAACCCTTTGTTCCCAAAGGGTTTGGAGAATTTATCATCAGATACTCTTTC 179
|| ||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 GATGAAATCTAACCCTTTGTTCCCAAAGGGTTTGGAGAATTTATCATCAGATAATCTTTC 179
Query 180 AAATGGGAGAGAATTTGTGTTAGAGCATTTGATGAATAACTCGACATTGAAGGATAAACA 239
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAGGGGAGAGAGTTTGTCTTAGAGCATTTGATGAATAACTCGACATTGAAGGATAAACA 239
Query 240 ACTCCGAGCTGTTCTGGTTGCAGCGGTGGAATCAGGAGACGGTATTAGAGATATAATCGA 299
||||| |||| |||| ||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 240 ACTCCAAGCTATTCTAGTTGCTGCGGTGGAATCAGGTGACGGTATTAGAGAGATAATTGA 299
Query 300 TGGGAAGCTCTGTAAGAGGCAATCTGTTGTGTCCTGTGTATCAGCACTTGAGACTGGTTT 359
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 TGGGAAACTCTGTAAGAGGCAATCTGTTGTGTCCTGTGTATCAGCACTTGAAACTGGTTT 359
Query 360 GAATATCCTTTCTAAGCACATAGAGCCTAAAGAGTTGTTACATAGAGAAGACAATAATAC 419
||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 360 GAAGATCCTTTCTAAGCACATAGAGCCTAAAGAGTCCCTACATAGAGAAGACAATGATGC 419
Query 420 AACTTTCTTGAGCTCGGAAAAACAGCCTATTGAGCTTTTGACCTGGAACATCTGGCAATC 479
|||||||||| | | || | ||||||||||||||||||| | ||||| |||||||| ||
Sbjct 420 AACTTTCTTGGGTTTGGGACAACAGCCTATTGAGCTTTTAAGATGGAATATCTGGCAGTC 479
Query 480 GAAAGCTATATCTTATTTTCTTAGTAAGAGAACCTTAAGATTGGTATCGGGAGCCAGCTT 539
|||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 480 GAAAGCGATATCTTATTTTCTTAGTAAGAGAACGTTAAGATTAGTATCAGGAGCCAGCTT 539
Query 540 GATATTTTCTGCACCAAAAGCTCAGTGGGTAGAAGTGTTAAGAAGGCTGCGTGTCTCAGA 599
|||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||
Sbjct 540 GATATTTTCTGCACCAAAAGCTCAGTGGGTAGAAATGTTGAGAAGGTTGCGTGTTTCAGA 599
Query 600 TAAGAATGATGACGATATATTCAACGAAAAGATCGAGCTATTGTTAATAGGATGCGTTAC 659
||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| || ||
Sbjct 600 TAAGAATGATGACGATATATTCATCGAAAAGATTGAGCTATTGTTACTAGGATGTGTAAC 659
Query 660 AAGCAGATGGACTCATTTAATCGAAGGTATCATGTCAGTTTCATACAAATCTGTCACTGT 719
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 AAGCAGATGGACCCATTTAATCGAAGGTATCATGTCAGTTTCCTACAAATCTGTCACTGT 719
Query 720 GTCAGAACAATACGAGGAGTTATGCAAGCTGCTTCTTCAAAGATCTAAAAGTTTAAAGCA 779
||||||| |||||||||||||||||||||| |||||||||||||||||| | ||||| ||
Sbjct 720 GTCAGAAGAATACGAGGAGTTATGCAAGCTTCTTCTTCAAAGATCTAAATGCTTAAAACA 779
Query 780 GAACGAGATTGCTTTGAATTCAAAGGTTGAAGAGATTCTAGAGTATCTAACAGAAATACT 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAACGAGATTGCTTTGAATTCTAAGGTTGAAGAGATTCTAGAGTATCTAACAGAAATACT 839
Query 840 AGAGAGTCGTTTACATCACCTCTGGAAATTACCTTCCGCCCTTACCGCAGCAGCAATTCC 899
||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 840 TGAGAGTCGTTTTCATCAGCTCTGGAAATTGCCTTCTGCCCTTACCGCAGCTGCAATTCC 899
Query 900 ATCATGGTCACCGCTGTTTGGTCTGTATTTTGGTGAAATAGAGAAACAGTTGAAACTAGA 959
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 900 ATCATGGTCACCGCTGTTTGGTCTGTATTTTGGCGGAATAGAGAAACAGTTGAAACTAGA 959
Query 960 CCACTCAACAACAAGATGTTGTAGCTGTGATAAAGATCTAAACGAGCACAAGGACTGTGA 1019
||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 960 CCACTCAACAACAAGATTTTGCAGCTGCGATAAAGATCTAAACGAGCACAATGACTGTGA 1019
Query 1020 GCTCGCGGAAAGAGTTTGGTGCTTGTACGTATTCCATATCTGCAAATGCCACTAGATAGA 1079
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1020 GCTCGCGGAAAGAGTTTGGTGCTTGTACGTATTCCATATCTGCATATGCCACTAGA-A-A 1077
Query 1080 AAACTAATGGTCATTGATCAATACAAGAAGATCAGCTTTCTTCAAGGTAAGGATCACATT 1139
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1078 AA-CTAATGGTCATTGATCAATACAAGAAGATCAG-TTTCTTCAAGGTAAG-ATCACATT 1134
Query 1140 GATGCAGATGTTTTGTCAATATATCTTATGAAAACTCTTGTTTTCTTGCGTTTGCGATTA 1199
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1135 GATGCAGATGTTTTGTCAAAATATCTTATGAAAACTCT-GTTTTCTTGCGTTTGCGATTA 1193
Query 1200 GATGATAACAGA 1211
|||||||| |||
Sbjct 1194 GATGATAA-AGA 1204
Score = 152 bits (82), Expect = 8e-36
Identities = 93/98 (95%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 1200 GATGA-TAACAGAAAGATCCAGAAATGAAATTGATTTCTAGTTCGAGATATTTCCTTTGC 1258
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1224 GATGAGTAACAGAAAGATCCAGAAATG-AATTGATTTCTAGTTCGAGATATTTCCTTAGC 1282
Query 1259 TTTATTTTGTTTCTTTAAAATTGAATTCTCTTTGTTTA 1296
||||||||| || |||||||||||||||||||||||||
Sbjct 1283 TTTATTTTGGTTGTTTAAAATTGAATTCTCTTTGTTTA 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63804892695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5