BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494596
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44000.1 | Symbols: | Glutathione S-transferase family prot... 1881 0.0
> AT5G44000.1 | Symbols: | Glutathione S-transferase family protein
| chr5:17702090-17703963 REVERSE LENGTH=1370
Length=1370
Score = 1881 bits (1018), Expect = 0.0
Identities = 1162/1233 (94%), Gaps = 3/1233 (0%)
Strand=Plus/Plus
Query 1 TCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGTCATTCACGCCACGCCAC 60
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 24 TCAGCCATGGCCAATTGCTTCGCGCCACAATTAACCTTCCCGTCCTTCTCGCCACGCCAT 83
Query 61 TTCAGCCCTAGAATGTCACACCAATCACCAAAACCAAGCACAAGCACCACCAACAAAAGC 120
||||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||
Sbjct 84 TTCAGCCCTAGAATGTCGCACCAATCACCAAAACCAAGCACGAGCACCACC-AC--AAGC 140
Query 121 ATCTTCACCTCCGCCACAAAGCTACTTTGGGGACCATCTCTTCCTCCAGGTCTACTTATC 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 141 ATCTTCACCTCCGCCACAAAGCTACTATGGGGACCATCTCTTCCTCCAGGTCTACTTATC 200
Query 181 TCCACCGCTCGAACAGCTTGGACCACCGTCTGGCAGCTCATGATGACCCAACTCGCTCCA 240
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 201 TCCACCGCTCGAACAGCTTGGACAACCGTGTGGCAGCTCATGATGACCCAACTCGCTCCA 260
Query 241 TCCGATTCATCCGGGTCATACACCCGACCCACTTCCAAATTTCGTCTCGACCCGACCCAA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 261 TCCGATTCATCCGGGTCATACACCCGACCCACTTCAAAATTTCGTCTCGACCCGACCCAA 320
Query 301 TTCCCTTCCGCTGCTTCCTCGGAGCTCCATCTCTACGTTGGTCTTCCTTGTCCTTGGGCT 360
||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 321 TTCACTTCCGCTGCTTCCTCCGAGCTCCACCTCTACGTTGGTCTTCCTTGCCCTTGGGCT 380
Query 361 CATCGAACCCTAATTGTCCGAGCTCTCAAGGGTTTAAACGACGCCGTTACAGTCTCAATC 420
|| ||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 381 CACCGAACCCTAATTGTCCGTGCTCTCAAGGGTTTAAACGACGCCGTTCCGGTCTCAATC 440
Query 421 GCATCGCCTGGTCAAGATGGATCATGGGAATTCAAGGATAACAATATCCCAATCAAGGAT 480
||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 441 GCATCACCTGGTCAAGATGGATCATGGGAATTCAAGAATAATAATATCCCAATCAAGGAT 500
Query 481 AAGGATAAACTTATCCCGAGTTTGGATAAGGCAAACCGGTGCCGGAATCTTAAGGAAGTG 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 501 AAGGATAAACTTATCCCGAGTTTGGATAAAGCAAACCGGTGCCGGAATCTTAAGGAAGTG 560
Query 541 TACAAATCAAGAACCGGAGGTTACGACGGTAGGTGTACCGTTCCAATGCTGTGGGATTCA 600
|||||||| |||| ||||||||||| || |||||||| ||||||||||||||||||| |
Sbjct 561 TACAAATCTAGAAGTGGAGGTTACGATGGGAGGTGTACTGTTCCAATGCTGTGGGATTTA 620
Query 601 AGGAAGAAAGAAGTTGTTTGTAACGAAAGCTACGATATTATCGAGTTCTTCAATTCGGGT 660
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 621 AGGAAGAAAGATGTTGTTTGTAACGAAAGCTATGATATTATCGAGTTCTTCAATTCAGGT 680
Query 661 TTAAACGAATTGGCACGAAACGCTGATTTAGATCTTTCGCCACCAGAGTTGAAAGAGATG 720
|||||| ||||||| ||||| | | | || ||||| ||||||||||||||||||||||||
Sbjct 681 TTAAACAAATTGGCCCGAAATGATAACTTGGATCTCTCGCCACCAGAGTTGAAAGAGATG 740
Query 721 ATCCAAGATTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGGTGCGGG 780
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATACAAGGTTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGGTGCGGG 800
Query 781 TTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGTACCTTGGAT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 801 TTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGTACCTTAGAT 860
Query 841 GAGATTGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTAACCTTGGCG 900
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 861 GAGATTGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTGACATTGGCT 920
Query 901 GATGTGTGTCTCTTTACAACTCTGATTCGTTTTGATCCGGTTTACAACATTCTATTCAAA 960
||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 921 GATGTATGTCTGTTCACAACTCTGATTCGTTTTGATTCGGTTTACAACATTCTATTCAAA 980
Query 961 TGCACCAAGAAGAAACTTGTTGAGTATCCGAATCTCTATGGCTATTTGCGGGACATGTAC 1020
|||||||||||||| |||||||| || || |||||||||||||||||||| || || |||
Sbjct 981 TGCACCAAGAAGAAGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGCGAGATTTAC 1040
Query 1021 CAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGGTACTACAAA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1041 CAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTACTACAAG 1100
Query 1081 ACGCTGTTTCCGCTAAACGCAAGTGGAATTCAACCGGCTATTTCTTCATCTGGCGATCAA 1140
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1101 ACGCTGTTTCCGCTAAACGCTAGTGGAATTCAACCGGCCATTTCTTCATCTGGCGATCAA 1160
Query 1141 GAATCTCTCTTGAGACCTCATAACCGAGACTTGGTGGGTAAAGCCGTTGAAGCACAACTC 1200
|| ||||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 1161 GATTCTCTCTGGAGACCTCATAACCGAGACTTGGTAGGTAAAGCCATTGAAGCACAGCTT 1220
Query 1201 GCTGTTTAAGCGTAGAAAACTGTACATAACTCA 1233
| ||||||||||||||||||||||||||||||
Sbjct 1221 TCGGTTTAAGCGTAGAAAACTGTACATAACTCA 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60592057815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5