BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494600
Length=2576
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43990.2 | Symbols: SUVR2, SDG18 | SET-domain containing pro... 3212 0.0
AT4G04315.1 | Symbols: | other RNA | chr4:2095259-2096518 FORW... 56.5 1e-06
> AT5G43990.2 | Symbols: SUVR2, SDG18 | SET-domain containing protein
lysine methyltransferase family protein | chr5:17697889-17702005
FORWARD LENGTH=2637
Length=2637
Score = 3212 bits (1739), Expect = 0.0
Identities = 2130/2310 (92%), Gaps = 61/2310 (3%)
Strand=Plus/Plus
Query 209 AACGATGGCACCTAATCCGCATATCAAGAAAGCATTTATGGCTATGAAGGCTCTGGGAAT 268
||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 208 AACGATGGCACCTAATCTGCATATCAAGAAAGCATTTATGGCTATGAGGGCTATGGGAAT 267
Query 269 AAAGGATGCGCAAGTGAAGCCGGTCTTGAAAAACCTTCTCTCCCTTTACGAGAAAAACTG 328
| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 268 AGAGGATGCGCGAGTGAAGCCGGTCTTGAAAAACCTTCTCGCCCTTTACGAGAAAAACTG 327
Query 329 GGAGTTAATTGCTGAAGACAATTACAGGGTTCTTGCTGATGCTATCTTCGATAGCCAAGA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 328 GGAGTTAATTGCTGAAGACAATTACAGGGTTCTTGCTGATGCTATCTTCGATAGCCATGA 387
Query 389 AGCTCAGGATATTCAAGAAAGCAAAGGAAAGAAAGCTGACGAAGCTAAAGCGGATGAAGG 448
|| ||||| ||||||||||||| ||| |||||| || ||||||| ||||| |||||||||
Sbjct 388 AGATCAGGCTATTCAAGAAAGCGAAGAAAAGAAGGCAGACGAAGTTAAAGAGGATGAAGG 447
Query 449 CTGTTCCACAGAAGTTGACAGAGGAAAGAAGAAGCTCCTTGAATCTATCGAGGAAGACGA 508
|||| || |||||||||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 448 CTGTGCCGCAGAAGTTGACAGAGGAAAGAAAAAGCTCCATGAATCTATCGAGGATGACGA 507
Query 509 TGATG-CACTGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGGCGCAGAGGTGAAGGAG 567
|||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 508 AGATGTTA-TGGCTGAGTCTGATCGCCCTTTAAAGAGGCTGCGACGCAGAGGTGAAGGAG 566
Query 568 GCTCTGCTTTGACAAGCCCTAGCTTGGGGAGTCCGACTTTAGA-GGAGCCTTCGACTT-A 625
||||||||||| |||||||||||||||| |||||||||||||| ||| ||||| | || |
Sbjct 567 GCTCTGCTTTGGCAAGCCCTAGCTTGGGCAGTCCGACTTTAGAGGGA-CCTTC-AATTAA 624
Query 626 TGACGAAGAAAATGCTCCGATCCTATTGCCATATCATCCTGTACCAACTAAAAATGACCA 685
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 625 TGACGAAGAAAATGCTCCGATCCTATTGCCATATCATCCTGTACCAATTGAAAATGACCA 684
Query 686 TGATGCTGGTGAGCTCATTATTCCAAAAGTCGAGCCCATTACAAATATGGCTCTCAGTTC 745
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 685 TGATGCTGGTGAGCTCATTCTTACAAAAGTCGAGCCCATTACAAATATGCCTCTCAGTTC 744
Query 746 TATTCATCCTGATTCAGTAGAGCGAGAGAACTCTTCAGTTCCCATGCTTGAGATGGAGAA 805
|| | ||||||||||||||| ||| | | | || || ||||||||||||| || ||
Sbjct 745 TA-T--TCCTGATTCAGTAGATAGAGGGGA--C-TC--TT-CCATGCTTGAGATAGACAA 795
Query 806 AACAAATGGACATGTGGAAGAGGGGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTAC 865
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 796 ATCAAATGGACATGTGGAAGAGAAGGCTGGTGAAACAGTAAGTACTGCTGATGGTACTAC 855
Query 866 CAATGATGTTTCTCCTACAACTGTTGGGAGATTTAGTGAGCACAAGCTAGCTGCAACCAC 925
|||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 856 CAATGACATTTCTCCTACAACTGTTGCGAGATTTAGTGATCACAAGCTAGCTGCAACCAT 915
Query 926 AGAAGAACCAT-CAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAAGTGAAGATTAATC 984
||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 916 AGAAGAACC-TCCAGCACTTGAATTAGCTTCTTCTGCTTCAGGCGAGGTGAAGATTAATC 974
Query 985 TTAGTTTTGCTCCTGCAACTGGAGGATCAAATCTATATTTACCTTCTATGGAGGAACTTC 1044
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 975 TTAGTTTTGCTCCTGCAACTGGAGGATCAAATCCCCATTTACCTTCTATGGAGGAACTAC 1034
Query 1045 GAAGAGCAATGGAGGAGAAGTGTCTTCGATCGTACAAAATACTGGACCCCAACTTTTCTG 1104
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1035 GAAGAGCAATGGAGGAGAAGTGTCTCCGATCATACAAAATACTGGACCCCAACTTTTCTG 1094
Query 1105 TGCTTGGTTTTATGAACGACATCTGTAGCTGCTACATGGACTTGGCAACAAAGGGGAAAG 1164
||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||
Sbjct 1095 TGCTTGGTTTTATGAACGACATCTGTAGCTGCTACCTGGACCTGGCAACAAACGGGAGAG 1154
Query 1165 ATTCAGCTAACCAGTTGCCAAAAAACTTGCCGTTTGTCACAGCAAACATTGATGCATTGA 1224
||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1155 ATTCAGCTAACCAATTGCCAAAAAACTTGCCGTTTGTCACAACGAACATTGATGCATTGA 1214
Query 1225 AGAAATCTGCAGCAAGGATGGCTTTTAC-T-TCA---C-------A----G--G------ 1260
|||||||||||||||||||||||| ||| | ||| | | | |
Sbjct 1215 AGAAATCTGCAGCAAGGATGGCTTATACTTCTCAGGCCAGTAATGATGTTGTTGAAATCT 1274
Query 1261 GCAGTAATGATCATATGCGTGATGTTGAAAACGGTGCAGTTGGTGATTCCATGGGTTTGG 1320
|||| || || ||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1275 GCAGCAACGAACATATGCGTGATGCTGAAAACGGTGCAGTTGGTGATTCCATGGCTTTGG 1334
Query 1321 TAGTTGTTCCTGAATGCCAACTTTCTGCGGATGAGTGGAGATTGATAAGCAGCTTCGGGG 1380
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1335 TAGTTGTTCCTGAATGCCAACTTTCTGCAGATGAGTGGAGATTGATAAGCAGCGTCGGGG 1394
Query 1381 ACATCACTCTAGGGAATGAAACTGTTGAGATTCCGTGGGTGAATGAGGTCAACGACAAGG 1440
|||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1395 ACATCAGTCTAGGGAAAGAAACTGTTGAGATTCCCTGGGTGAATGAGGTCAACGACAAAG 1454
Query 1441 TTCCTCCAGTTTTTCGTTACATAGTCCAAAGTCTTGTGTATCAAGATGCTGCAGTGAAGA 1500
||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1455 TTCCTCCAGTTTTCCATTACATAGCCCAAAGTCTTGTGTATCAAGATGCTGCAGTGAAGT 1514
Query 1501 TTTCGCTTGGGAATATCAGAGATGACCAATGCTGCTTCTCTTGCTGTGGAGATTGCTTGG 1560
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1515 TTTCGCTTGGGAATATCAGGGATGACCAATGCTGCTCCTCTTGCTGTGGAGATTGCTTGG 1574
Query 1561 CTCCGTCAATGGCATGCAGTTGTGCAACTGCATTTAATGGCTTTGCATACACAGTAGATG 1620
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1575 CTCCGTCAATGGCATGCAGATGTGCAACTGCTTTTAATGGCTTTGCATACACAGTAGATG 1634
Query 1621 GCCTCCTACAAGAAGATTTTCTGGAACAGTGTATCTCTGAGGCCCGTGATCCGCGGAAAC 1680
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 GCCTCCTACAGGAAGATTTTCTGGAACAGTGTATCTCTGAGGCCCGTGATCCGCGGAAAC 1694
Query 1681 ATATGGTACAGTATTGCAAAGAATGTCCTTTAGAGAAAGCCAAAAAAGAAGTAATTCTTC 1740
| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1695 AAATGTTACTGTATTGCAAAGAATGTCCTTTAGAGAAAGCCAAAAAAGAAGTAATCCTGG 1754
Query 1741 AACCGTGCAAGGGGCATCTAAAGAGAAAGGTCATTAAAGAATGTTGGAGCAAGTGTGGTT 1800
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1755 AACCGTGCAAAGGGCATCTAAAGAGAAAGGCCATTAAAGAATGTTGGAGCAAGTGTGGCT 1814
Query 1801 GCATGAAGAAATGTGGCAACCGAGTTGTCCAACAGGGCATTCACAACAAGCTGCAAGTGT 1860
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1815 GCATGAAGAATTGTGGCAACCGAGTTGTCCAACAGGGCATTCACAACAAGCTGCAGGTGT 1874
Query 1861 TTTTCACGCCCAATGGGAGAGGCTGGGGACTCAGAACTCTAGAAAAACTGCCTAAAGGAG 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 TTTTCACGCCCAATGGGAGAGGCTGGGGACTCAGAACTCTAGAAAAACTGCCTAAAGGAG 1934
Query 1921 CTTTTGTCTGTGAGTTTGCTGGAGAGATATTGACCCTTCCAGAGTTGTTCCAACGCAGCT 1980
| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1935 CATTTGTCTGTGAGCTTGCTGGAGAGATATTGACCATTCCAGAGTTGTTCCAACGCATCT 1994
Query 1981 CTGAGATGCTTACTTCTCCGGTATTATTGGATGCATACTGGGGTTCTGAAGACATTTCAG 2040
|||| | || ||||||||| ||| |||||||||| |||||||||||||||||||||||||
Sbjct 1995 CTGACAGGCCTACTTCTCCAGTAATATTGGATGCGTACTGGGGTTCTGAAGACATTTCAG 2054
Query 2041 GGGATGACAAAGCACTTTGTCTTGACGGAACGCACTATGGAAATATTTCCAGGTTCATCA 2100
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2055 GGGATGACAAAGCACTTTCTCTTGAAGGAACGCACTATGGAAATATTTCCAGGTTCATCA 2114
Query 2101 ATCACAGATGCTTAGATGCAAATTTGATTGAGATCCCAGTTCATGTGGAGACTACTGATT 2160
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2115 ATCACAGATGCTTAGATGCAAATTTGATTGAGATCCCAGTTCATGCGGAGACTACTGATT 2174
Query 2161 TACACTACTATCATCTCGCATTCTTCACAACAAGAGAGATCGATGCTATGGAGGAACTTA 2220
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2175 CACACTACTATCATCTTGCATTCTTCACAACAAGAGAGATCGATGCTATGGAGGAACTTA 2234
Query 2221 CCTGGGATTATGGTGTCCCATTCAACCAAGATGTGTTTCCCACGAGTCCGTTCCATTGTC 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 CCTGGGATTATGGTGTCCCATTCAACCAAGATGTGTTTCCCACGAGTCCGTTCCATTGTC 2294
Query 2281 GATGTGGTAGCGAGTTCTGTCGGGTCATTAAGCAGATAAGCAAAGGCAAGAATGTGAAGA 2340
|||||||||||| ||||| || |||| |||||||| ||||||||||||||||||||||
Sbjct 2295 AATGTGGTAGCGACTTCTGCCGAGTCAGGAAGCAGATTAGCAAAGGCAAGAATGTGAAGA 2354
Query 2341 AGCGAGCATGAGAG----CTTTACTTTGGTAGTTTTTGAAGATATGTGGTGG-------- 2388
|||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 2355 AGCGAGCATGAGAGAGAGCTTTACATTGGTAGGTTTTGAAGATATGTGGTGGGCGCAAAC 2414
Query 2389 T--T----GTTGTGAATGAATTGGCaaaaaaaTTCCAATCGAAAAAACTCTTTTTGTCAA 2442
| | |||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 2415 TCCTTTTTGTTGTGAATGAATTGGCAAAAAAATTCCAATCGAAAAA-CGCTTTTTGTAAA 2473
Query 2443 AAAT-CCGACAAGGCATATCAGCAAAGTCG 2471
|||| ||||||| |||||| ||||||||||
Sbjct 2474 AAATTCCGACAATGCATATAAGCAAAGTCG 2503
> AT4G04315.1 | Symbols: | other RNA | chr4:2095259-2096518 FORWARD
LENGTH=579
Length=579
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 2328 AAGAATGTGAAGAAGCGAGCATGAGAGCTT 2357
||||||||||||||||||||||||||||||
Sbjct 281 AAGAATGTGAAGAAGCGAGCATGAGAGCTT 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127875537707
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5