BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494602
Length=509
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43970.1 | Symbols: TOM22-V, TOM9-2, ATTOM22-V | translocase... 671 0.0
> AT5G43970.1 | Symbols: TOM22-V, TOM9-2, ATTOM22-V | translocase
of outer membrane 22-V | chr5:17692807-17693403 FORWARD LENGTH=597
Length=597
Score = 671 bits (363), Expect = 0.0
Identities = 455/497 (92%), Gaps = 16/497 (3%)
Strand=Plus/Plus
Query 1 CTCACTCTCCGAAGCGATTATTCAGAAAGTTTTAA-CC--AAAA-C---aaaaaaaaaTC 53
|||||||||||||||| |||||||||||||||| || |||| | ||||||||| |
Sbjct 12 CTCACTCTCCGAAGCG---ATTCAGAAAGTTTTAACCCAAAAAAGCAAAAAAAAAAAAAC 68
Query 54 TTCTT-ATCAATCAATGGCGGCGAAGAGAATCGGAGCCGGTAAATCTGGAGGCGGAGATC 112
|| || ||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 69 TT-TTGTTCACTCGATGGCGGCGAAGAGAATCGGAGCCGGTAAATCTGGCGGCGGAGATC 127
Query 113 CAAACATATTGGCGAGGATATCAAACTCCGAGATCGTGTCTCAAGGAAGACGCGCCGCTG 172
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||| || |
Sbjct 128 CAAACATATTAGCGAGGATTTCAAACTCCGAGATCGTGTCCCAAGGAAGACGCGCAGCAG 187
Query 173 GAGATGCCGTCGAAGTATCAAAGAAACTGCTACGGAGCACCGGAAAAGCAGCGTGGATCG 232
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 188 GAGATGCCGTCGAAGTATCGAAGAAACTGCTCCGGAGCACCGGAAAAGCAGCGTGGATCG 247
Query 233 CTGGAACAACTTTTCTCATCCTTGTTGTTCCATTGATCATTGAGATGGATCGCGAGGCAC 292
|||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 248 CTGGGACAACTTTTCTCATACTTGTTGTTCCATTGATCATCGAGATGGATCGAGAGGCAC 307
Query 293 AAATCAACGAAATTGAGCTTCAAAATGCCAGTCTCCTCGGAGCTCCACCATCTCCAATGC 352
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 308 AAATCAACGAAATTGAGCTTCAACAGGCCAGTCTCCTCGGAGCTCCACCATCTCCAATGC 367
Query 353 AAAGGGGATTGTAAGAATCCCT-ATTATGGATTAGGGTTCTCTGTTTTACCTGTGTTTTT 411
|||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||
Sbjct 368 AAAGGGGATTGTAAGAATCCCTTATTATGGATTAGGGTCCTCTGTTTTACGAGT-TTTTT 426
Query 412 TG-TTATATGGTGTTTTTTGGAATTTGAATTTCGTATAAGAGTGCTTTACTTTACATCGT 470
|| ||||||| |||| |||| ||||||||||||||||||||||| |||| || |||||||
Sbjct 427 TGGTTATATGTTGTTGTTTG-AATTTGAATTTCGTATAAGAGTGGTTTAATTCACATCGT 485
Query 471 TGGATTCATAAAGTTCA 487
|||||||||||||||||
Sbjct 486 TGGATTCATAAAGTTCA 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24313327148
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5