BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494606
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43940.2 | Symbols: HOT5 | GroES-like zinc-binding dehydroge... 1910 0.0
> AT5G43940.2 | Symbols: HOT5 | GroES-like zinc-binding dehydrogenase
family protein | chr5:17684156-17686534 FORWARD LENGTH=1440
Length=1440
Score = 1910 bits (1034), Expect = 0.0
Identities = 1133/1180 (96%), Gaps = 9/1180 (1%)
Strand=Plus/Plus
Query 64 CTGCGGTGGCTTACGAGCCGAACAAGCCTCTGGTCATCGAAGATGTGCAAGTAGCTCCTC 123
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 180 CTGCGGTGGCTTACGAGCCGAACAAGCCTCTGGTCATCGAAGATGTGCAAGTGGCTCCAC 239
Query 124 CTCAAGCCGGTGAGGTTCGGATCAAGATCCTCTACACTGCTCTTTGTCACACCGACGCTT 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCAAGCTGGTGAGGTTCGGATCAAGATCCTCTACACTGCTCTTTGTCACACCGACGCTT 299
Query 184 ACACTTGGAGCGGCAAGGATCCTGAAGGTCTCTTTCCATGTATCCTCGGTCATGAAGCTG 243
||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 300 ACACTTGGAGCGGCAAGGATCCTGAAGGTCTCTTTCCTTGTATTCTAGGTCATGAGGCTG 359
Query 244 CTGGGGTTGTTGAGAGTGTTGGTGAAGGAGTAACAGAAGTTCAAGCTGGAGATCATGTAA 303
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 360 CTGGGATTGTTGAGAGTGTTGGTGAAGGAGTAACTGAAGTTCAAGCTGGAGATCATGTTA 419
Query 304 TCCCTTGTTATCAAGCTGAGTGTCGTGAATGCAAGTTTTGCAAATCTGGGAAGACTAACC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCCCTTGTTATCAAGCTGAGTGTCGTGAATGCAAGTTTTGCAAATCTGGGAAGACTAACC 479
Query 364 TTTGTGGCAAGGTGAGATCTGCTACTGGTGTTGGGATTATGATGAACGACCGTAAGTCGA 423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 TTTGTGGCAAGGTGAGATCTGCTACTGGTGTTGGGATTATGATGAATGACCGTAAGTCGA 539
Query 424 GGTTCTCGGTTAATGGAAAACCCATTTATCACTTCATGGGTACTTCCACGTTTAGTCAGT 483
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGTTCTCGGTTAATGGGAAACCCATTTATCACTTCATGGGTACTTCCACGTTTAGTCAGT 599
Query 484 ATACTGTTGTTCATGATGTTAGCGTCGCTAAAATTGATCCT-CATGCTCCTTTGGATAAA 542
|||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 600 ATACTGTTGTTCATGATGTTAGCGTCGCCAAAATTGATCCTAC-TGCTCCTTTGGATAAA 658
Query 543 GTCTGCCTTCTTGGATGTGGTGTTCCCACTGGCCTTGGAGCAGTTTGGAATACTGCAAAA 602
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTTTGCCTTCTTGGATGTGGTGTTCCCACTGGCCTTGGAGCAGTTTGGAATACTGCAAAA 718
Query 603 GTAGAACCAGGTTCAAATGTTGCCATTTTTGGTCTTGGCACTGTGGGGCTTGCTGTTGCT 662
||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 719 GTAGAACCAGGGTCAAATGTTGCCATTTTCGGTCTTGGCACTGTTGGACTTGCTGTTGCC 778
Query 663 GAGGGTGCGAAAACAGCTGGTGCTTCAAGGATCATTGGCATTGATATCGATAGCAAGAAG 722
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 GAGGGTGCGAAAACAGCTGGTGCTTCAAGGATCATTGGCATTGACATCGATAGCAAGAAG 838
Query 723 TATGAAACTGCAAAGAAGTTTGGTGTTAACGAATTTGTGAACCCAAAGGATCACGACAAG 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TATGAAACTGCAAAGAAGTTTGGTGTTAACGAATTTGTGAACCCAAAGGATCACGACAAG 898
Query 783 CCAATTCAGGAAGTGATTGTCGAGCTCACTGATGGTGGTGTTGACTACAGCTTTGAGTGC 842
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 899 CCAATTCAGGAAGTGATTGTCGATCTCACTGATGGCGGTGTTGACTACAGCTTTGAGTGC 958
Query 843 ATCGGGAATGTATCCGTGATGAGAGCTGCATTGGAGTGCTGTCACAAGGGATGGGGAACT 902
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATCGGGAATGTCTCCGTGATGAGAGCTGCATTGGAGTGCTGTCACAAGGGATGGGGAACT 1018
Query 903 TCGGTTATAGTGGGTGTAGCAGCATCAGGACAAGAGATATCAACTCGACCATTCCAACTA 962
||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1019 TCGGTCATAGTTGGTGTTGCAGCATCAGGACAAGAGATATCAACTCGTCCGTTCCAACTC 1078
Query 963 GTGACTGGCCGTGTGTGGAAAGGAACAGCTTTTGGTGGTTTCAAGAGTCGAACCCAAGTG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTGACTGGCCGTGTGTGGAAAGGAACAGCTTTTGGTGGTTTCAAGAGTCGAACCCAAGTG 1138
Query 1023 CCTTGGCTTGTAGAAAAGTATC-TGAACAAGGAGATAAAAGTGGATGAATACATAACACA 1081
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1139 CCTTGGCTTGTAGAAAAGTA-CATGAACAAGGAGATAAAAGTGGATGAATACATAACACA 1197
Query 1082 CAACTTGACCTTGGGAGAGATCAATAAGGCCTTCGATCTATTGCACGAAGGTAGTTGCCT 1141
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1198 CAACTTGACCTTGGGAGAAATCAATAAGGCTTTCGATCTATTGCACGAAGGTACTTGCCT 1257
Query 1142 TCGTTGTGTCCTCGATACCAGCGAATGACAACACCAATGG-TCCTCTCTGCTTCAATCTA 1200
|||||||||||||||||||||| |||||| | | ||| |||||||||||| ||||||
Sbjct 1258 TCGTTGTGTCCTCGATACCAGCAAATGACTATA----TGGGTCCTCTCTGCTTTAATCTA 1313
Query 1201 TGTGTTCTTGTGACTTTCGTCTTTTATCAGTAATGACATT 1240
|||||||||||||||||||||||||||| ||| |||||||
Sbjct 1314 TGTGTTCTTGTGACTTTCGTCTTTTATCGGTATTGACATT 1353
Score = 95.3 bits (51), Expect = 1e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1 CTCTATCTCTCTAATCTCTTCCTTCGTCAATGGCGACTCAAGGTCAGGTTATCACATGCA 60
|||||||||||| || ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 81 CTCTATCTCTCTCATTTCTTCCTGCGTCAATGGCGACTCAAGGTCAGGTTATCACTTGCA 140
Query 61 AAG 63
|||
Sbjct 141 AAG 143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5