BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494607
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43935.1 | Symbols: FLS6, ATFLS6 | flavonol synthase 6 | chr... 1166 0.0
> AT5G43935.1 | Symbols: FLS6, ATFLS6 | flavonol synthase 6 | chr5:17682179-17683446
FORWARD LENGTH=882
Length=882
Score = 1166 bits (631), Expect = 0.0
Identities = 776/846 (92%), Gaps = 10/846 (1%)
Strand=Plus/Plus
Query 24 AACCAAGAAGATCCCTGTGGTTGATCTAAGCGATCCCAGCGACGAGCTTGTGGCTCATGC 83
|||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 45 AACCAAGAAGATCCCTATCGTTGATCTAAGCGATCCAAGCGACGAGCTCGTGGCTCATGC 104
Query 84 AGTGGTGAAAGCGAGCGAAGAGTGGGGGATTTTTCAAG-TGGTTAACCACGGCATTCCTG 142
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 105 AGTGGTGAAAGCGAGCGAAGAGTGGGGGATTTTTC-AGTTGGTTAACCACGGCATTCCTG 163
Query 143 CGGACTTAATGCGACGCCTTCAAGAAGTCGGGAGGCAGTTTTTCGAGCTCCCGGCTACCG 202
| || || ||||| || || |||||||| ||||||||||||||||||||||||||| |||
Sbjct 164 CCGAATTGATGCGGCGGCTGCAAGAAGTGGGGAGGCAGTTTTTCGAGCTCCCGGCTTCCG 223
Query 203 AAAAGGAATCTGTCACAAGGCCGGTGGACTCCCAAGACATCGAAGGTTACTTTCCCAAAG 262
|||| ||||||||||||||||| | |||||||||||||||||||||| |||| |||| |
Sbjct 224 AAAAAGAATCTGTCACAAGGCCAGCCGACTCCCAAGACATCGAAGGTTTCTTTTCCAAGG 283
Query 263 ACCCAAAACATA-TAAAGGCTTGGGACGATCATCTGATTCACAATATCTGGCCACCAGCG 321
| |||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 284 ATCCAAAA-AAACTAAAGGCTTGGGACGATCATCTGATTCACAATATCTGGCCACCATCG 342
Query 322 TCTATCAACTATAGATATTGGCCTAACAATCCTTCAGATTACAGTGATGACGGTTTTAGG 381
|| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 343 TCCATCAACTATAGATATTGGCCTAACAATCCTTCAGATTACAGTGGTGATGGTTTCAGG 402
Query 382 GATGTGACTGAGGAGTACACAAGGAACGTGACGAAGCTAACGGAGAAGATTGTTGGTCTA 441
|| |||||| |||||||||||||||| || || || |||||||||||||||||||| |
Sbjct 403 GAGGTGACTAAGGAGTACACAAGGAATGTTACAAATCTAACGGAGAAGATTGTTGG--T- 459
Query 442 GGCGGGGATAAAACACAGTATGTGATGAGGATCAATTGCTATCCGCCGTCGGATTTAGTT 501
||| |||||| |||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 460 GGC---GATAAAGCACAGTATGTGATGAGGATCAATTACTATCCGCCATCGGATTCAGCC 516
Query 502 ATCGGAGCACCGGCGCACACAGATCTCTGTGCACTCGCACTTCTTGTCTCCAACGAGGTT 561
|||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 517 ATCGGAGCACCGGCGCACACAGATTTTTGTGGACTCGCACTTCTTGTCTCCAACGAGGTT 576
Query 562 CCAGGGCTTCAAGTGTTCAAGGATAACCACTGGTTTGACGTTGAGTATATCAACTCCGCA 621
|||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 577 CCAGGGCTTCAAGTGTTCAAGGATGACCATTGGTTCGACGTTGAGTATATCAACTCCGCT 636
Query 622 GTCATTGTACTCATCGGGGATCAGATCATGAGGATGAGCAACGGGAGGTACAAGAACGTG 681
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 637 GTCATTGTCCTCATTGGGGATCAGATCATGAGGATGAGCAACGGGAAGTACAAGAACGTG 696
Query 682 TTACACAGATCAACAATGGATAAGGAAAAGACAAGAATGTCGTGGCCGGTTTTGGTAGAG 741
|||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 697 CTACACAGATCAATAATGGATGCGAAAAAGACAAGAATGTCGTGGCCGATTTTGGTAGAG 756
Query 742 CCTAAGCATGGTTTGGTCGTGGGACCTTTGCCTGAGCTCACGGGAGATGAGAATCCTCCC 801
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 757 CCTAAGCGTGGTTTGGTCGTGGGACCTTTGCCTGAGCTCACGGGAGACGAGAATCCTCCC 816
Query 802 AAGTTTGAGTCTTTAACTTTTCAAGACTACGTATACCGCAAGATCAAAAAGCTTCTTCGT 861
||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||
Sbjct 817 AAGTTTGAGTCTTTAACTTTTGAAGACTATGTATACCGCAAGATCATAAAGGTTCTTCGT 876
Query 862 GATTGA 867
||||||
Sbjct 877 GATTGA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5