BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494611
Length=2316
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43920.1 | Symbols: | transducin family protein / WD-40 rep... 2745 0.0
> AT5G43920.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:17672669-17675845 FORWARD LENGTH=2515
Length=2515
Score = 2745 bits (1486), Expect = 0.0
Identities = 1805/1950 (93%), Gaps = 58/1950 (3%)
Strand=Plus/Plus
Query 354 ATTTCGT-TTTGGGTGAGTGATTTGATATTTAGAGGGTTAATTTCTGATTTGGTGAT-AT 411
|||| || |||||| | | |||| | |||||| ||||| |||||||||| ||||| |
Sbjct 513 ATTTAGTGTTTGGG-AAATTATTT-A-ATTTAG-TGGTTATTTTCTGATTTAGTGATGA- 567
Query 412 TTTGAGAATTTTGGGTTCTTTATTATTATAATTGGTAGCGGGAAATTTATACGTTCCTTT 471
||||||||||||| ||| |||| || | | ||||||||||||||||| ||| |||||||
Sbjct 568 TTTGAGAATTTTGTGTTGTTTA-TA-T-T-CTTGGTAGCGGGAAATTTGTACTTTCCTTT 623
Query 472 GTGGACCTTTCAACT-TCTGAATGTGGGAAGATTT-TTGAGAATCTTAGAAAGTCATCAT 529
||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||
Sbjct 624 GTGGACCTTTCAACTAT-TGAATGT-GGAAGATTTGCTGAGAATCTTAGAAAGTCATCAT 681
Query 530 CATCC-T---T------AC---------G--TAAGAGTGA-TTCCAGATGGAGAATGGGT 567
||||| | | || | | ||||||| || ||||||||||||||||
Sbjct 682 CATCCATACGTAAGAGAACTTTTTTTTAGCTTGAGAGTGATTTTCAGATGGAGAATGGGT 741
Query 568 TATGGGAGGTTTTAGGTTCAAAAGGGTTGTTGAAGAAACATGAATTCATTAGGATTTTGG 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TATGGGAGGTTTTAGGTTCAAAAGGGTTGTTGAAGAAACATGAATTCATTAGGATTTTGG 801
Query 628 TTCAATGCTTATACTCTTTAGGATTCAAGAACTCTGCTTCTTGTTTGGAAATCGAGTCGA 687
|||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 802 TTCAATGCTTATACTCGTTAGGATTCAAGAACTCTGCTTCTTGTCTGGAATTCGAGTCAA 861
Query 688 ACATCTCGTATAAATCTGCGGATTATGAGTCTCTTGAAAAGCGAGTTTTGAGTGGTG-AT 746
| |||| ||||||| | || |||| ||||| ||||||||||| |||||||||||| | |
Sbjct 862 AGATCTTGTATAAAACAGCTGATTCTGAGTTTCTTGAAAAGCAAGTTTTGAGTGG-GAAC 920
Query 747 TGGGATAGTTGCGTAGC-GGTCCTGGACAGGATTTTTGATCATTCCAAGGATGATACGAG 805
||||||||||||||| | ||| || ||||| ||||||||| |||||| ||||||||||||
Sbjct 921 TGGGATAGTTGCGTA-CAGGTTCTAGACAGAATTTTTGATAATTCCATGGATGATACGAG 979
Query 806 AAACACGGCTGTATATTTAGTGTTTAAGCAATGTTTGTTGGAGTATTTGAAACGTGGGGA 865
||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 980 GAACACGGCTTTATATCTAGTGTTCAAGCAATGTTTGTTGGAGTATTTGAAACGTGGGGA 1039
Query 866 TGTTTCGTTGGCCTTGAATGTATTGCGGAAGCAAGCTCCGATGTTAAGGATGGGGAAAGA 925
|||||| |||||||||||||| || ||||||||||||||| ||||| ||||||| |||||
Sbjct 1040 TGTTTCTTTGGCCTTGAATGTGTTACGGAAGCAAGCTCCGTTGTTACGGATGGGAAAAGA 1099
Query 926 GAAGATTCACAGGCTTGCTTGTGATATTGTTTATTCGAAAGAGATGGAACCCGGTGAAGT 985
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1100 GAAGATTCATAGGCTTGCTTGTGATATTGTTTATTCGAAAGAGATGGAATCCGGTGAAGT 1159
Query 986 AGACAGCTGTTTGGTTC-AGGGTTGGAGGAAAAAGTTGTTGGTTGAACTCGAGAAGTTGA 1044
||||| |||||| |||| | | || ||||| |||||||||||||||||| ||||||||||
Sbjct 1160 AGACAACTGTTTAGTTCTA-GATTTGAGGAGAAAGTTGTTGGTTGAACTGGAGAAGTTGA 1218
Query 1045 TTCCCTTGCCAATTGTTATTCCTGAGAGAAGGTTGGAACATTTGGTTGAGACTGCTGTGA 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TTCCCTTGCCAATTGTTATTCCTGAGAGAAGGTTGGAACATTTGGTTGAGACTGCTGTGA 1278
Query 1105 TGGACCAGATTGATACATGTCTGTATCATAACTCATGGGATGCAGTATCACTTTACAAGG 1164
|||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 1279 TGGACCAGATTGATACGTGTATGTATCATAACTCATGTGATGCAGTATCGCTTTACAAGG 1338
Query 1165 ATCACTGTTGCGGTAGAGATCAAATTCCTTCAGAGACAGTCCAGATTTTGATGGCACACA 1224
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1339 ATCACTGTTGCGGTAGAGACCAAATTCCTTCAGAGACAGTCCAGATTTTGGTGGCACACA 1398
Query 1225 AAAATGAAGTGTGGTTTGTGCAATTCTCTAATAGTGGCAAATATCTGGCCACTGCATCAA 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 AAAATGAAGTGTGGTTTGTGCAATTCTCTAATAGTGGCAAATATCTGGCCACTGCATCAA 1458
Query 1285 GCGACTGTACAGCTATAATATGGAAGGTACTGGATGATAACAAAGTCGAACTGAAGCACA 1344
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1459 GCGATTGTACAGCTATAATATGGAAGGTACTGGATGACAACAAAGTCGAACTGAAGCACA 1518
Query 1345 CGCTTGAGAGCCACCAAAATCCAGTTTCTTTTGTCTCTTGGAGCCCTGACGATACTAAAC 1404
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1519 CACTTGAGAGCCACCAAAATCCAGTTTCTTTTGTCTCGTGGAGTCCTGACGATACTAAAC 1578
Query 1405 TGCTTACATGCGGAAACGCTGAGGTTCTTAAGCTATGGGATGTTGACACAGGTGTGTTGA 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 TGCTTACATGCGGAAACGCTGAGGTTCTTAAGCTATGGGATGTTGACACAGGTGTGTTGA 1638
Query 1465 GACACACATTTGGAAACAACAATACTGGATTCACTGTCAGCTCTTGCGCATGGTTCCCTG 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 GACACACATTTGGAAACAACAATACTGGATTCACTGTCAGCTCTTGCGCATGGTTCCCTG 1698
Query 1525 ACTCAACTCGGCTTGTCTGTGGCAGTTCTGACCCAGAAAGAGGGATTGTAATGTGGGATA 1584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1699 ACTCAACTCGGCTTGTCTGTGGCAGTTCTGACCCAGAAAGAGGGATTGTAATGTGGGACA 1758
Query 1585 CTGATGGAAACGAGATCAAAGCCTGGAGAGGAACGAGAATTCCAAAGGTGGTGGATTTGG 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 CTGATGGAAACGAGATCAAAGCCTGGAGAGGAACGAGAATTCCAAAGGTGGTGGATTTGG 1818
Query 1645 CTGTGACGCCGAATGGCGAGAGTATGATTACAGTGTTTTCGGATAAAGGGATCCGGATCT 1704
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1819 CTGTGACGCCGGATGGCGAGAGTATGATTACAGTGTTTTCGGATAAAGAGATCCGGATCT 1878
Query 1705 TGAATTTAGAGACAAAAGTCGAACGTGTTATCTCTGAGGAACAGCCAATTACTTCCCTTT 1764
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 TGAATTTGGAGACAAAAGTCGAACGTGTTATCTCTGAGGAACAGCCAATTACTTCCCTTT 1938
Query 1765 CGATTTCTGGAGATGGTAAGTTTTTTATAGTCAACTTGAGCTGCCAAGAGATACATCTTT 1824
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1939 CAATTTCTGGTGATGGTAAGTTTTTTATAGTCAACTTGAGCTGCCAAGAGATACATCTTT 1998
Query 1825 GGGATCTTGCTGGAGAGTGGAAACAACCATTGAAGTTCTCGGGGCACAGGCAGAGCAAAT 1884
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1999 GGGATCTTGCTGGAGAGTGGAAACAACCATTGAAGTTCTCGGGTCACAGGCAGAGCAAAT 2058
Query 1885 ACGTGATACGGTCATGTTTTGGTGGGTTGGACAGTTCGTTCATTGCCAGTGGAAGCGAGG 1944
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 2059 ACGTGATACGGTCATGTTTTGGTGGGTTGGATAGTTCGTTCATCGCCAGTGGAAGTGAGG 2118
Query 1945 ATTCACAAGTTTACATATGGAATCTAAAGAACGCGAAGCCGCTTGAAGTGTTATCAGGTC 2004
||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2119 ATTCACAGGTTTACATATGGAATCTAAAGAACACAAAGCCGCTTGAAGTGTTATCAGGTC 2178
Query 2005 ATTCCATGACTGTGAACTGTGTGAGCTGGAACCCGAAAAATCCTCGGATGTTGGCCTCTG 2064
|||| ||||| || |||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 2179 ATTCGATGACCGTAAACTGTGTAAGCTGGAACCCGAAAAATCCTCGGATGCTAGCCTCTG 2238
Query 2065 CTAGTGATGACCAAACCATCCGTATTTGGGGACCGGGCAAACCGAACAAACCAGAGAACT 2124
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2239 CTAGTGATGACCAAACCATCCGTATTTGGGGACCGGGCAAACCGAACAAACCACTGAACT 2298
Query 2125 GATTAGATAACCATAAACCGTAGTAGCTTTAAACCAGGACTTAGTTCTAGTAGTTCCACA 2184
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2299 GATTAGATAACCAGAAACCGTAGTAGCTTTAAACCAGGACCTAGTTCTAGTAGTTCCACA 2358
Query 2185 TTTGTGTATAGTTAATTTCT--TTT----------G-T--TCCTTATTGGCTTTGCAGAA 2229
||||||||||||| |||||| ||| | | ||||||||||||||||||||
Sbjct 2359 TTTGTGTATAGTTCATTTCTGGTTTTTTCTTTTTTGGTGGTCCTTATTGGCTTTGCAGAA 2418
Query 2230 CAATTTCTTGCTTTTTGAGTTTTGGTACAC 2259
|||| |||||||||||||||||||||||||
Sbjct 2419 CAATCTCTTGCTTTTTGAGTTTTGGTACAC 2448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114959248050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5