BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494611 Length=2316 Score E Sequences producing significant alignments: (Bits) Value AT5G43920.1 | Symbols: | transducin family protein / WD-40 rep... 2745 0.0 > AT5G43920.1 | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:17672669-17675845 FORWARD LENGTH=2515 Length=2515 Score = 2745 bits (1486), Expect = 0.0 Identities = 1805/1950 (93%), Gaps = 58/1950 (3%) Strand=Plus/Plus Query 354 ATTTCGT-TTTGGGTGAGTGATTTGATATTTAGAGGGTTAATTTCTGATTTGGTGAT-AT 411 |||| || |||||| | | |||| | |||||| ||||| |||||||||| ||||| | Sbjct 513 ATTTAGTGTTTGGG-AAATTATTT-A-ATTTAG-TGGTTATTTTCTGATTTAGTGATGA- 567 Query 412 TTTGAGAATTTTGGGTTCTTTATTATTATAATTGGTAGCGGGAAATTTATACGTTCCTTT 471 ||||||||||||| ||| |||| || | | ||||||||||||||||| ||| ||||||| Sbjct 568 TTTGAGAATTTTGTGTTGTTTA-TA-T-T-CTTGGTAGCGGGAAATTTGTACTTTCCTTT 623 Query 472 GTGGACCTTTCAACT-TCTGAATGTGGGAAGATTT-TTGAGAATCTTAGAAAGTCATCAT 529 ||||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||| Sbjct 624 GTGGACCTTTCAACTAT-TGAATGT-GGAAGATTTGCTGAGAATCTTAGAAAGTCATCAT 681 Query 530 CATCC-T---T------AC---------G--TAAGAGTGA-TTCCAGATGGAGAATGGGT 567 ||||| | | || | | ||||||| || |||||||||||||||| Sbjct 682 CATCCATACGTAAGAGAACTTTTTTTTAGCTTGAGAGTGATTTTCAGATGGAGAATGGGT 741 Query 568 TATGGGAGGTTTTAGGTTCAAAAGGGTTGTTGAAGAAACATGAATTCATTAGGATTTTGG 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 742 TATGGGAGGTTTTAGGTTCAAAAGGGTTGTTGAAGAAACATGAATTCATTAGGATTTTGG 801 Query 628 TTCAATGCTTATACTCTTTAGGATTCAAGAACTCTGCTTCTTGTTTGGAAATCGAGTCGA 687 |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| | Sbjct 802 TTCAATGCTTATACTCGTTAGGATTCAAGAACTCTGCTTCTTGTCTGGAATTCGAGTCAA 861 Query 688 ACATCTCGTATAAATCTGCGGATTATGAGTCTCTTGAAAAGCGAGTTTTGAGTGGTG-AT 746 | |||| ||||||| | || |||| ||||| ||||||||||| |||||||||||| | | Sbjct 862 AGATCTTGTATAAAACAGCTGATTCTGAGTTTCTTGAAAAGCAAGTTTTGAGTGG-GAAC 920 Query 747 TGGGATAGTTGCGTAGC-GGTCCTGGACAGGATTTTTGATCATTCCAAGGATGATACGAG 805 ||||||||||||||| | ||| || ||||| ||||||||| |||||| |||||||||||| Sbjct 921 TGGGATAGTTGCGTA-CAGGTTCTAGACAGAATTTTTGATAATTCCATGGATGATACGAG 979 Query 806 AAACACGGCTGTATATTTAGTGTTTAAGCAATGTTTGTTGGAGTATTTGAAACGTGGGGA 865 ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 980 GAACACGGCTTTATATCTAGTGTTCAAGCAATGTTTGTTGGAGTATTTGAAACGTGGGGA 1039 Query 866 TGTTTCGTTGGCCTTGAATGTATTGCGGAAGCAAGCTCCGATGTTAAGGATGGGGAAAGA 925 |||||| |||||||||||||| || ||||||||||||||| ||||| ||||||| ||||| Sbjct 1040 TGTTTCTTTGGCCTTGAATGTGTTACGGAAGCAAGCTCCGTTGTTACGGATGGGAAAAGA 1099 Query 926 GAAGATTCACAGGCTTGCTTGTGATATTGTTTATTCGAAAGAGATGGAACCCGGTGAAGT 985 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1100 GAAGATTCATAGGCTTGCTTGTGATATTGTTTATTCGAAAGAGATGGAATCCGGTGAAGT 1159 Query 986 AGACAGCTGTTTGGTTC-AGGGTTGGAGGAAAAAGTTGTTGGTTGAACTCGAGAAGTTGA 1044 ||||| |||||| |||| | | || ||||| |||||||||||||||||| |||||||||| Sbjct 1160 AGACAACTGTTTAGTTCTA-GATTTGAGGAGAAAGTTGTTGGTTGAACTGGAGAAGTTGA 1218 Query 1045 TTCCCTTGCCAATTGTTATTCCTGAGAGAAGGTTGGAACATTTGGTTGAGACTGCTGTGA 1104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1219 TTCCCTTGCCAATTGTTATTCCTGAGAGAAGGTTGGAACATTTGGTTGAGACTGCTGTGA 1278 Query 1105 TGGACCAGATTGATACATGTCTGTATCATAACTCATGGGATGCAGTATCACTTTACAAGG 1164 |||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||| Sbjct 1279 TGGACCAGATTGATACGTGTATGTATCATAACTCATGTGATGCAGTATCGCTTTACAAGG 1338 Query 1165 ATCACTGTTGCGGTAGAGATCAAATTCCTTCAGAGACAGTCCAGATTTTGATGGCACACA 1224 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1339 ATCACTGTTGCGGTAGAGACCAAATTCCTTCAGAGACAGTCCAGATTTTGGTGGCACACA 1398 Query 1225 AAAATGAAGTGTGGTTTGTGCAATTCTCTAATAGTGGCAAATATCTGGCCACTGCATCAA 1284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1399 AAAATGAAGTGTGGTTTGTGCAATTCTCTAATAGTGGCAAATATCTGGCCACTGCATCAA 1458 Query 1285 GCGACTGTACAGCTATAATATGGAAGGTACTGGATGATAACAAAGTCGAACTGAAGCACA 1344 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1459 GCGATTGTACAGCTATAATATGGAAGGTACTGGATGACAACAAAGTCGAACTGAAGCACA 1518 Query 1345 CGCTTGAGAGCCACCAAAATCCAGTTTCTTTTGTCTCTTGGAGCCCTGACGATACTAAAC 1404 | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1519 CACTTGAGAGCCACCAAAATCCAGTTTCTTTTGTCTCGTGGAGTCCTGACGATACTAAAC 1578 Query 1405 TGCTTACATGCGGAAACGCTGAGGTTCTTAAGCTATGGGATGTTGACACAGGTGTGTTGA 1464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1579 TGCTTACATGCGGAAACGCTGAGGTTCTTAAGCTATGGGATGTTGACACAGGTGTGTTGA 1638 Query 1465 GACACACATTTGGAAACAACAATACTGGATTCACTGTCAGCTCTTGCGCATGGTTCCCTG 1524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1639 GACACACATTTGGAAACAACAATACTGGATTCACTGTCAGCTCTTGCGCATGGTTCCCTG 1698 Query 1525 ACTCAACTCGGCTTGTCTGTGGCAGTTCTGACCCAGAAAGAGGGATTGTAATGTGGGATA 1584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1699 ACTCAACTCGGCTTGTCTGTGGCAGTTCTGACCCAGAAAGAGGGATTGTAATGTGGGACA 1758 Query 1585 CTGATGGAAACGAGATCAAAGCCTGGAGAGGAACGAGAATTCCAAAGGTGGTGGATTTGG 1644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1759 CTGATGGAAACGAGATCAAAGCCTGGAGAGGAACGAGAATTCCAAAGGTGGTGGATTTGG 1818 Query 1645 CTGTGACGCCGAATGGCGAGAGTATGATTACAGTGTTTTCGGATAAAGGGATCCGGATCT 1704 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1819 CTGTGACGCCGGATGGCGAGAGTATGATTACAGTGTTTTCGGATAAAGAGATCCGGATCT 1878 Query 1705 TGAATTTAGAGACAAAAGTCGAACGTGTTATCTCTGAGGAACAGCCAATTACTTCCCTTT 1764 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1879 TGAATTTGGAGACAAAAGTCGAACGTGTTATCTCTGAGGAACAGCCAATTACTTCCCTTT 1938 Query 1765 CGATTTCTGGAGATGGTAAGTTTTTTATAGTCAACTTGAGCTGCCAAGAGATACATCTTT 1824 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1939 CAATTTCTGGTGATGGTAAGTTTTTTATAGTCAACTTGAGCTGCCAAGAGATACATCTTT 1998 Query 1825 GGGATCTTGCTGGAGAGTGGAAACAACCATTGAAGTTCTCGGGGCACAGGCAGAGCAAAT 1884 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1999 GGGATCTTGCTGGAGAGTGGAAACAACCATTGAAGTTCTCGGGTCACAGGCAGAGCAAAT 2058 Query 1885 ACGTGATACGGTCATGTTTTGGTGGGTTGGACAGTTCGTTCATTGCCAGTGGAAGCGAGG 1944 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 2059 ACGTGATACGGTCATGTTTTGGTGGGTTGGATAGTTCGTTCATCGCCAGTGGAAGTGAGG 2118 Query 1945 ATTCACAAGTTTACATATGGAATCTAAAGAACGCGAAGCCGCTTGAAGTGTTATCAGGTC 2004 ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 2119 ATTCACAGGTTTACATATGGAATCTAAAGAACACAAAGCCGCTTGAAGTGTTATCAGGTC 2178 Query 2005 ATTCCATGACTGTGAACTGTGTGAGCTGGAACCCGAAAAATCCTCGGATGTTGGCCTCTG 2064 |||| ||||| || |||||||| ||||||||||||||||||||||||||| | ||||||| Sbjct 2179 ATTCGATGACCGTAAACTGTGTAAGCTGGAACCCGAAAAATCCTCGGATGCTAGCCTCTG 2238 Query 2065 CTAGTGATGACCAAACCATCCGTATTTGGGGACCGGGCAAACCGAACAAACCAGAGAACT 2124 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2239 CTAGTGATGACCAAACCATCCGTATTTGGGGACCGGGCAAACCGAACAAACCACTGAACT 2298 Query 2125 GATTAGATAACCATAAACCGTAGTAGCTTTAAACCAGGACTTAGTTCTAGTAGTTCCACA 2184 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2299 GATTAGATAACCAGAAACCGTAGTAGCTTTAAACCAGGACCTAGTTCTAGTAGTTCCACA 2358 Query 2185 TTTGTGTATAGTTAATTTCT--TTT----------G-T--TCCTTATTGGCTTTGCAGAA 2229 ||||||||||||| |||||| ||| | | |||||||||||||||||||| Sbjct 2359 TTTGTGTATAGTTCATTTCTGGTTTTTTCTTTTTTGGTGGTCCTTATTGGCTTTGCAGAA 2418 Query 2230 CAATTTCTTGCTTTTTGAGTTTTGGTACAC 2259 |||| ||||||||||||||||||||||||| Sbjct 2419 CAATCTCTTGCTTTTTGAGTTTTGGTACAC 2448 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114959248050 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5