BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494614
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43910.2 | Symbols: | pfkB-like carbohydrate kinase family ... 1842 0.0
> AT5G43910.2 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr5:17667310-17670239 REVERSE LENGTH=1479
Length=1479
Score = 1842 bits (997), Expect = 0.0
Identities = 1119/1180 (95%), Gaps = 0/1180 (0%)
Strand=Plus/Plus
Query 1 CTCCCTCTCTCTGCCACTTCGAATTTAACACATTCCCGGAGCTCCGATCATGTCATCTTG 60
|||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 106 CTCCCTCTCTCTGCCACTACGAATTTAGCACATAGCCGGAGCTCCGATCATGTCATCTTG 165
Query 61 CTCCGACGACGCAATTCCCGGCCAACCAATCGTCCTTGGTTGTGGTCAACTTTGTCTGGA 120
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 166 CTCCGACGAAGCGATTCCCGGCCAACCAATCGTCCTCGGTTGTGGTCAACTTTGTCTAGA 225
Query 121 TTACTTAGTCACAGTATCGTCTTTTCCAATTCCCGATCAAAAGATTCGAGGCACGAGCTT 180
||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||
Sbjct 226 TTACTTAGTCACAGTGGCGTCTTTTCCAATTCCCGATCAAAAGATCCGAGGCACAAGCTT 285
Query 181 CAAGGTCCAAGGAGGTGGAAACACTGGGAATTCTTTAACATGTGTTGCTCGTTTGGGTTT 240
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 286 CAAGGTCCAAGGAGGTGGTAACACTGGGAATGCTTTAACATGTGTTGCTCGTTTGGGTTT 345
Query 241 GCCTTCTCGAATCTTAGCTAAGGTTGCTGATGATTCTCACGGGCGTTATATGGTAGAGGA 300
||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 346 GCCTTGTCGAATCTTGGCTAAGGTTGCTGATGATTCTCACGGGCGATATATGGTAGAAGA 405
Query 301 ACTCGAATCTAGCGGTGTGGATACTTCGTTTTGTATGAATGCTAAAGACGGAGCTTCACA 360
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 406 ACTCGAATCTAGCGGTGTGGATACTTCGTTTTGTATGAGTGCTAAAGATGGAGCTTCACA 465
Query 361 TTTTAATTACGCCATTGTAGATAACCAAACGAATACTCGAACGTGTATTTACACTCCAGG 420
||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 466 TTTTAATTACGTCATTGTAGATAACCAAACGAATACTCGTACTTGTATTTACACTCCAGG 525
Query 421 ATATCCTCCTTTGCTCCCAGATGACCTTACGGAATCTCTCCTTTTTGATGTTCTTGATGG 480
||||||||||||||| |||||||||||||| |||||||| ||| | ||||||||||||||
Sbjct 526 ATATCCTCCTTTGCTACCAGATGACCTTACTGAATCTCTACTTCTAGATGTTCTTGATGG 585
Query 481 AGTAAGAGTTCTATATGTTAATGGAAGGTCCCGTGAAGCCGAATTGCTTCTTGCACAAAA 540
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 586 AGTAAGAGTTCTATATGTAAATGGAAGGTCCCGTGAAGCCGAATTGCTTCTTGCGCAAAA 645
Query 541 GGCACATAGCAAGAATATATCAATCTTAATTAATGCAGAGaaaaaaaGGGCAGGGCTAGA 600
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 646 GGCACATAGCAAGAATATACCAATCTTAATTAATGCAGAGAAAAAAAGGACAGGGCTAGA 705
Query 601 TGAGCTCCTTGACTTGGCTGATTATGCTATTTGCTCTACTAACTTCCCTCAGCAATGGAC 660
||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 706 TGAGCTCATTGACTTAGCTGATTATGCTATTTGTTCTACTAACTTCCCTCAGGAATGGAC 765
Query 661 AGAGTCACCATCTTCTCCCAGTGCACTTCTCTCTATGCTCATAAGATTACCGAAGCTAAA 720
|| | |||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 766 AGGGGCACCCTCATCTCCCAGTGCACTTCTCTCTATGCTCATAAGATTACCAAAGCTAAA 825
Query 721 ATTTGTGATCGTGACTTTGGGGGAACACGGTTGTGTGATGCTCGAAAGATGTTCCAATGA 780
|||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct 826 ATTTGTGATCATGACTTTGGGGGAACACGGTTGTGTGATGCTTGAGAGATGTTCCAGTGA 885
Query 781 GGTTTCAGGGTCAGAAGAAGAGACAGACATAGATGAATTACACGAGTCTCTGAAACAAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GGTTTCAGGGTCAGAAGAAGAGACAGACATAGATGAATTACACGAGTCTCTGAAACAAAG 945
Query 841 CACAGACTTTACAAGTGTCTTACCGGTCTGCAATTCATCGCTAGTGACTAGACTGACAGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CACAGACTTTACAAGTGTCTTACCGGTCTGCAATTCATCGCTAGTGACTAGACTGACAGG 1005
Query 901 GAATGTTACAGGGAGATTGGTTATAGTAACAGCTGAGAAAATACCTTCATCGGAACTTAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1006 GAATGTTACAGGGAGATTGGTTATAGTAACAGCTGAGAAAATACCTTCATCGGAACTCAT 1065
Query 961 AGACACAACTGGTGCTGGAGATGCGTTTACGGGAGCTTTGCTTTATGGTTTGTGCACAGA 1020
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1066 AGACACAACCGGTGCTGGAGATGCGTTTACCGGAGCTTTGCTTTATGGTTTGTGCACAGG 1125
Query 1021 CATGGCTACAGAGGAAATGTTGACATTTGCATCTCGAGTCGCTGCTTGCTGCTGCAGAGG 1080
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CATGGCTTTAGAGGAAATGTTGACATTTGCATCTCGAGTCGCTGCTTGCTGCTGCAGAGG 1185
Query 1081 TTTAGGAGCTCGAACTACTCTTCCATTTCGTACTGATCCAAACCTTGCAACGTTCTTGGG 1140
||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1186 TTTAGGAGCTCGAACAAGTCTTCCATATCGTACTGATCCAAACCTTGCAACGTTCTTAGG 1245
Query 1141 GGCATAACCGTAATTTTCATTGTCTTCTTTACGTCTAAAA 1180
| ||| |||||||||||| |||| ||||| |||| |||||
Sbjct 1246 GACATGACCGTAATTTTCTTTGTTTTCTTGACGTATAAAA 1285
Score = 97.1 bits (52), Expect = 4e-19
Identities = 56/58 (97%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1244 CGTTTGTGTGTGTGACACCGTCGTACTTTACGTGTACCATGTGAACAAAGTACTAATG 1301
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1414 CGTTTGTGTGTGTGACACCGTCTTACTTTACGTGTACCATGTGAACAAAGTTCTAATG 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64005694875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5