BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494617
Length=2869
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43880.1 | Symbols: | Protein of unknown function (DUF3741)... 3997 0.0
> AT5G43880.1 | Symbols: | Protein of unknown function (DUF3741)
| chr5:17639818-17643648 REVERSE LENGTH=2879
Length=2879
Score = 3997 bits (2164), Expect = 0.0
Identities = 2673/2908 (92%), Gaps = 77/2908 (3%)
Strand=Plus/Plus
Query 1 TCGGTGATGTCACCATAATCTTCTTCTCGACTCTATAGCCG-AAAAAGCTTCCACCTTTA 59
|||||| |||||||||||||||||||| ||||||||| || |||||||||||| |||||
Sbjct 1 TCGGTGTTGTCACCATAATCTTCTTCTTGACTCTATA-TCGAAAAAAGCTTCCAACTTTA 59
Query 60 TCACCTTAATCGAAACTCCGGCGATAAAGCTTCTACATTTAAGGTCTAAATTCCGAAACT 119
|| | |||| |||||||||||||| ||||||||||| |||| | |||||| | |||||||
Sbjct 60 TCTCGTTAACCGAAACTCCGGCGACAAAGCTTCTACCTTTATGTTCTAAAAT-CGAAACT 118
Query 120 CCGGCGAGAAAGCTTCTACCTTT-A-TTGCTTAAATTGAACCTCCGGCGGAATTTCAACC 177
||||||| |||||||||| ||| | ||| |||||||||| |||||| |||||| ||||
Sbjct 119 CCGGCGATAAAGCTTCTA-TTTTAATTTG--TAAATTGAACTTCCGGCTGAATTTTAACC 175
Query 178 GGAGAATGCAGATTCCGGCAGACAGGCGGTGAAGAAATGAATAAGCAACGAAGAAGAAAC 237
|||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 176 GGAGTATGTAGATTCCGGCACACAGGCTTTGAAGAAATGAATAAGCAACGAAGAAGAAAC 235
Query 238 GTTCAGGCTCATGGATGTTTAGG-TCGGATGGTTAATCTGTTCGATTTTGGAACAGTTGG 296
|||||||||||||||||||| || ||||||||| |||||||| ||||||||||| |||||
Sbjct 236 GTTCAGGCTCATGGATGTTT-GGCTCGGATGGTGAATCTGTTTGATTTTGGAACTGTTGG 294
Query 297 TAATGGAAAGAAGTTGCTCACTGAGAAACCCTATTTTGATCATGGGTCTATCAAGAGGAA 356
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 295 TAATGGAAAGAAACTGCTCACTGAGAAACCCCATTTTGATCATGGGTCTATCAAGGGGAA 354
Query 357 TCAGTTTGATCATATAGAAGATAAAGTTGATGTGAGGAATGGTGGAGTCAATGGAACACC 416
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCAATTTGATCAGATAGAAGATAAAGTTGATGTGAGGAATGGTGGAGTCAATGGAACACC 414
Query 417 GATGAAGATGCTTTTAGAACAGGAAATGTCGAAAGAGATGGAATTTAAGCTCAGTTCGAC 476
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 415 AATGAAGATGCTTTTAGAACAGGAAATGTCGAAAGAAATGGAAGTTAAGCTAAGTTCGAC 474
Query 477 AAATTTGGTTGCTAAGTTAATGGGTCTTGATTCGTTTCCTCAGACACAATCTGCTCCAAG 536
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 475 AAATTTGGTTGCTAAGTTGATGGGTCTTGATTCGTTTCCTCAGACACAATCTGCTCCTAG 534
Query 537 GAGTAATAGTTCAAAGCCTCGTCTAAAGAGGTCGTTGAGTCATGGGGAGGATAAAGATGT 596
|||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 535 GAGTTATAGTTCAAAGCCTCGTCTAAAGAGGTCGTTAAGTCACGGGGAATATAAAAATGT 594
Query 597 CTATGAGATTTGGCAGAAACCTGGGGAGTTGAGTAGTAATGGTGTGGAGGGTTTAAGCAA 656
||||||||| ||||||||| ||||| | |||||||||||||||||||| ||||||||
Sbjct 595 CTATGAGATATGGCAGAAAGAGGGGGAACTAAGTAGTAATGGTGTGGAGGGATTAAGCAA 654
Query 657 GAAGAAGATGGACATTGTACGCCAAAAGTTCTTGGAGGCGAAACGTTTGGTTACAGACGA 716
|||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||
Sbjct 655 GAAGAAGATGGACATTGTCCGTGAAAAGTTCTTGGAAGCGAAGCGTTTGGTTACAGACGA 714
Query 717 TAAACTTCGACATTCTAAAGAGTTTCAAGAAGCTATGGAAGTTTTGAGTTCGAACAAGGA 776
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 715 TGAACTTCGACATTCTAAGGAGTTTCAAGAAGCTATGGAAGTTTTGAGTTCGAATAAGGA 774
Query 777 GTTGTTCCTCGAGTTTTTGCAGGAATCGAATAACTTCTTCTCTCATCATCTCCACAGTTT 836
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 775 GTTGTTCCTCGAGTTTTTGCAGGAGTCGAATAACTTCTTCTCTCATCATCTCCACAGTTT 834
Query 837 CCAGTCTACAGATGCACCAACCTCAGAGAAGTCTAAGCGGATCACTATTTTGAAGCCTTC 896
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CCAGTCCACAGATCCACCAACCTCAGAGAAGTCTAAGCGGATCACTATTTTGAAGCCTTC 894
Query 897 AAAGACC-AT--TGATG----G--T-G--A-G--GCAGCCATTGAATCTTCGAAG-GACG 940
||||||| | ||||| | | | | | ||||||||||||||||| || ||||
Sbjct 895 AAAGACCGTTGCTGATGAAAAGTTTGGAAATGAACCAGCCATTGAATCTTCG-AGAGACG 953
Query 941 GAATTAAGAGTGGTAAAGGTCTTGATTTGTTCAAATGGCCTGTTAAAGAAGAATATCCGA 1000
||| ||||||||| || ||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 954 GAAGTAAGAGTGGCAAGGGTCTTGATTTTTTCAAATGGCCGGTTGAAGAAGAATATCCGA 1013
Query 1001 CAAAGCAATCAACTCGAATAGTTGTTCTGAAACCTAATGGCCATGTCACAAAGGCTTCAT 1060
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 1014 CAAAGCAATCAACTCGAATAGTTGTTCTGAAACCTAACGGTCAAGTCACAAAGGCTTCAT 1073
Query 1061 CATGTCCAACCTCTCCAAGAGGTTCTGAGGAGAGAGAGTCAAGAGATGTGGCTAGGAGAG 1120
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1074 CATGTCCAACCTCTCCAAGAGGTTTTGAGGGGAGAGAGTCAAGAGATGTGGCTAGGAGAG 1133
Query 1121 TGAAGAGCCAGATACTTAAGGAAGAAACTTTACAATCTTCTGGCTTCTCCAACGGCTATA 1180
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1134 TGAAGAGCCAGATACTTAAGGAAGAAACTTTACAATCTTCTGTCTTTTCCAACGGCTATA 1193
Query 1181 TAGGCGATGATAGTTCTCTTAATGACTATGCAGATTCTGAAATCATGTCACCGGTTTCTA 1240
|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1194 TATGCGATGATAGTTCTCTTAACGACTACGCAGATTCTGAAATCATGTCACCGGTTTCTA 1253
Query 1241 GGCATTCATGGGATTATATTAACAAGTACGATAGCCCTTTTTCTTCTTCGCCCTTTAGCA 1300
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1254 GGCATTCATGGGATTATATAAACAAGTATGATAGCCCTTTTTCTTCTTCGCCTTTTAGCA 1313
Query 1301 GAGCCTCGGGTTCTCCGGAGTCATCATCCGTCTGCAGAGAGGCCAAGAAACGGCTTTCTG 1360
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1314 GAGCCTCGGGTTCTCCAGAGTCATCATCTGTCTGCAGAGAGGCCAAGAAACGGCTTTCTG 1373
Query 1361 AAAGATGGGCATTGATGGCAGCAGCCAATGAGAATTTGCAGGAGACCAATGTTATCGAAA 1420
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 1374 AAAGATGGGCATTGATGGCAGCAGCCAATGAGAATTTGCAGGAGGCCAAAGTTATTGAAA 1433
Query 1421 AGAAAGGCTCTAATAGTACCTTAGGTGATATGCTTGCACTTCCAGATTTAAAAGACGATC 1480
||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1434 AGAAAGGCTCTAATATTTCCTTAGGTGATATGCTTGCACTTCCAGATTTAAGAGAAGATC 1493
Query 1481 TTAGAACCGAAGAAGAAAAAACAAGCGATGGTAATGAACAGGAGGGTCCTAAAGTATCTG 1540
||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1494 TTATAACTGAAGAAGAAGAAACAAGCAATGGTAATGAACAGGAGGGTCCTAAAGTATCTG 1553
Query 1541 CATCTTGCTTTGATGGTAATTTCAGTAGAGAAGAAGGAAAATTAAAGCCTCCTAAAAGCC 1600
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1554 CATCTTGCTTTGATGGTAATTTCAGTAGAGAAGAAGGAAAGTTAAAGCCTCCTAAAGGCC 1613
Query 1601 TTACACGATCGAAATCTCTCCCTGAATCATCGACAAGTCTTGGTCACAAATCCCTTGATA 1660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1614 TTACACGATCAAAATCTCTCCCTGAATCATCGACAAGTCTTGGTCACAAATCCCTAGATA 1673
Query 1661 GTACCAAGAAG-GGGAA--ATCCAAAGTTCCAGAGGAGCTGACAAAGTCAAAGAGCTTGA 1717
|| |||| ||| | || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1674 GTTCCAACAAGAGTAAATCATCCAGAGTTCCAGAGGAGCTGACAAAGTCAAAGAGCTTGA 1733
Query 1718 AATGGTCACTGAAAGGTAAAGTCTCAAACTTTCTTTTCTCAAGGAGCAAGAAAGCCAGTA 1777
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 AATGGTCTCTGAAAGGTAAAGTCTCAAACTTTCTTTTCTCAAGGAGCAAGAAAGCCAGTA 1793
Query 1778 AGGAGAGATCTTATGAGGAATCCCAAATGGTAAACCCCAAAATCTTGGATTCTCGGTGTA 1837
|||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 1794 AGGAGAGATCTTATGAGGAATCCC--CT-G---------AAATCTTGGATTCTCGGTGTA 1841
Query 1838 ACGATGAATATGATGCATCAGTGTCTGCCAGAAGCATGAATTCTCGGGAGGGAAGCTTAT 1897
|| |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1842 ACAATGAATATGATGCATCAGTGTCTGCCAGAATCATGACTTCTCGGGAGGGAGGCTTAT 1901
Query 1898 CAATTGCAAAGCCGACCATTTTCGGAAACTCTAGCGAGTGGCGTGATGAGCCTAGTCCAA 1957
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1902 CAATTACAAAGCCGACCATTTTCGGAAACTCTAGCGAGTGGCGCGATGAGCCTAGTCCCA 1961
Query 1958 TTTCGGTCCTGGAAACTTCATTTGATGAGGATGATGGAATCTTTTTTAATTCCTCTATCT 2017
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1962 TTTCAGTCCTGGAAACTTCTTTTGATGAGGAGGATGGAATCTTTTTTAATTCCTCTATCT 2021
Query 2018 TGAATAGATCATCATCTTCTCTTGAACGGGAGATGAAATCCAACTTATTAGGAAAATCGC 2077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2022 TGAATAGATCATCATCTTCTCTTGAACGGGAGATGAAATCCAACTTATTAGGAAAATCAC 2081
Query 2078 CTCCGATAGGGTCCATTGGTCGAACCTTATCATTCGATGACTCAACAGTTGCTCGGTGCT 2137
|||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 2082 CTCCCATAGGGTCTATTGGTCGGACCTTATCATTCGATGACTCAACAGTAGCTCGGTGTT 2141
Query 2138 ACTCATCTAAACGCTCTACTGCTTCCACAAGAGACGAGGAAGAAGACTTGCGTCTCCTCA 2197
|||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |
Sbjct 2142 ACTCATCTAAACGCTCTACTACTTCCGCAAGAGACGAGGAAGAAGACTTGCGCCTCCTTA 2201
Query 2198 TCAACACACTCTTATCAGCAGCTGATCTCGATTCAATCTCAGACAATCTTTTATCTAAAT 2257
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 2202 TCAACACACTCTTATCAGCAGCTGATCTCGATGCAATCTCGGACAATCTTTTGTCTAAAT 2261
Query 2258 GGCATTC-TGCAGAGAGCCCACTAGACCCAACTCTGAGAAACAGCTACGCAGACTCAACG 2316
||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2262 GGCATTCCT-CAGAGAGCCCACTAGACCCATCTCTGAGAAACAGCTACGCAGACTCAACG 2320
Query 2317 GAACAGAAAAGACTCGGATCAAACGTTAAGAAGCTAGTGTTCGACCTCGTCAACACGCTA 2376
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 2321 GAACAGAAAAGACTCGGATCAAACGTGAAGAATCTAGTGTTTGACCTCGTCAACACGCTG 2380
Query 2377 CTCTTGGAGCTAACACCGAGCTATCTCGGACCTCGTAGT---CCCTTGA-CACTCTCTGG 2432
|||||||||||||||||||||||||| |||||||||||| ||| ||| | ||||||||
Sbjct 2381 CTCTTGGAGCTAACACCGAGCTATCTTGGACCTCGTAGTAGTCCCATGATC-CTCTCTGG 2439
Query 2433 TAAGCCATTGCAAGTTTATGTGATAAACCGGATGCAAGAATGTTTAACGGGTAACGGAAG 2492
|||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 2440 TAAGCCATTGGGGGTTTATGTGATAAACAGAATGCAAGAGTGTTTAACGGGTAACGGAAG 2499
Query 2493 AGTGGAAGATCGGTGGTGGGATGAAGACGGAGACTTGAGCAGTTTGGCGGTGAACAAAGT 2552
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2500 AGTGGAAGATCGGTGGTGGGATGAAGACGGAGACTTGAGCAGTTTGGCGGTGAATAAAGT 2559
Query 2553 GGTGAGGATTGAAGTAGCAGAGATTGGTTCGCAGGAGAGTTTGAGATTGGAAATGGATTC 2612
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2560 GGTGAGGATTGAAGTAGCTGAGATTGGTTCACAGGAGAGTTTGAGATTGGAAATGGATTC 2619
Query 2613 CATGGGAGAGGAACTAGAGTTGAAATTGCTGGAGGAGTTAGTGGAGGAGGCTTTGATGGA 2672
||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2620 CATGGGAGAGGAATTAGAATTGAAGTTGCTGGAGGAGTTAGTGGAGGAGGCTTTGATGGA 2679
Query 2673 TTTGTCAGAACAATCCAAATTATTTATTCCAAGTATTTGTTAATCATATGGATGTATATT 2732
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 2680 TTTGTCAGAACAATCCAAATTATTCATTCCAAGTATTTGTTAATCATATG--T--ATATT 2735
Query 2733 ATATGGTTTTATTGTGTGTATAAATATCTGGTGAATCACACTTTCTTTCTATTTTGtttt 2792
||||||||||||||||||||||| ||| | |||| | || || |||||||| |||
Sbjct 2736 ATATGGTTTTATTGTGTGTATAA-TAT--G---AATCTCG-TT-CT--CTATTTTGGTTT 2785
Query 2793 tttttttGGG-TGAATGATAATGGAAAGTAGTGTTACATATA---T-A-T----A----C 2838
| |||| ||| ||| ||||| |||||||||||||| |||||| | | | | |
Sbjct 2786 TCTTTTGGGGGTGACTGATAGTGGAAAGTAGTGTTTCATATAGCCTCAATGTTTATATAC 2845
Query 2839 TAATGTCTCAAGAATCAAGATTGTTCCA 2866
||||||||||||||||||||||||||||
Sbjct 2846 TAATGTCTCAAGAATCAAGATTGTTCCA 2873
Score = 67.6 bits (36), Expect = 6e-10
Identities = 61/73 (84%), Gaps = 2/73 (3%)
Strand=Plus/Plus
Query 40 CGAAAAAGCTTCCACCTTTATCACCT-TAATCGAAACTCCGGCGATAAAGCTTCTACATT 98
||| |||||||| |||||||| || |||||||||||||||||||||||||||| ||
Sbjct 81 CGACAAAGCTTCTACCTTTATGTTCTAAAATCGAAACTCCGGCGATAAAGCTTCTAT-TT 139
Query 99 TAAGGTCTAAATT 111
||| | ||||||
Sbjct 140 TAATTTGTAAATT 152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142574452006
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5