BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494623
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43830.1 | Symbols: | Aluminium induced protein with YGL an... 1563 0.0
> AT5G43830.1 | Symbols: | Aluminium induced protein with YGL
and LRDR motifs | chr5:17622336-17624329 REVERSE LENGTH=1103
Length=1103
Score = 1563 bits (846), Expect = 0.0
Identities = 1002/1073 (93%), Gaps = 27/1073 (3%)
Strand=Plus/Plus
Query 22 ttttttcttctttctgcaaatttttattttcCCG-GAAAATCATCACTGAGaaaaaaaTG 80
|||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 37 TTTTTTCTTCTTTCTGCAAA-TTTTATTTTCCCGAGAAAATCATCACTGAG--AAAAATG 93
Query 81 CTCGCTGTGTTTGAGAAGACGGTGGCGAATAGCCCTGAAGCTTTGCAAAGTCCACACTCG 140
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 94 CTCGCTGTGTTTGAGAAGACGGTGGCGAATAGCCCTGAAGCTTTACAGAGTCCACACTCG 153
Query 141 TCTGAGTCTGCTTTCGCTTTGAAAGATGGATCTCTCGCGACTCATTTCGCTTCCGTGAAT 200
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 154 TCTGAGTCTGCTTTCGCGTTGAAAGATGGATCTCTCGCTACTCATTTCGCTTCCGTGAAT 213
Query 201 CCTAACTCCGTCACGCTTAACTTCGGATCTTCTGGATTTGTTGCTTACTCTCTTGATAAT 260
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CCCAACTCCGTCACGCTTAACTTCGGATCTTCTGGATTTGTTGCTTACTCTCTTGATAAT 273
Query 261 CATGATCCTCGTGTTCCTAGATTATTTGCGGTGGTGGATGACATTTTCTGTCTCTTCCAA 320
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 274 CCTGATCCTCGTGTTCCTAGATTATTTGCTGTGGTGGATGATATTTTCTGTCTCTTCCAA 333
Query 321 GGACACATTGAGAACCTAACGTTTCTGAAGCAGCAGTATGGGCTGAACAAAATCACAAAC 380
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 334 GGACACATTGAGAACCTACCGTTTCTGAAGCAGCAGTATGGACTGAACAAAATCACAAAC 393
Query 381 GAGGCTATCATTGTGATTGAGGCTTACAGGACGTTGCGTGATCGAGGTCCCTACCCTGTG 440
||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 394 GAGGCCATCATTGTGATTGAGGCTTACAGGACACTACGTGATCGAGGTCCTTACCCTGTG 453
Query 441 GACAAAGTTGTCAGAGATTTCCATGGAAAGTTTGCGTTTATCCTCTTCGATAGCGCCAAG 500
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 454 GACAAAGTTGTTAGAGATTTCCATGGAAAGTTTGCGTTTATACTCTTCGATAGCGTCAAG 513
Query 501 AAAACCGTCTTCGCTGCTGCTGACGCAGATGGAAGTGTGCCGTTCTTCTGGGGAACCGAT 560
||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 514 AAAACTGTCTTTGCTGCTGCTGACGCCGATGGGAGTGTGCCGTTCTTCTGGGGAACCGAT 573
Query 561 GCTGAAGGGCATCTTGT-TCTTTCTGATAACACTGAGATGATGAAGAAAGGTTGCGCCAA 619
||||||||||| ||||| | ||||||||||||| |||||| |||||||||||||||||||
Sbjct 574 GCTGAAGGGCACCTTGTGT-TTTCTGATAACACCGAGATGGTGAAGAAAGGTTGCGCCAA 632
Query 620 ATCTTATGGTCCTTTCCCTAAAGGTTGCTTCTTTACATCATCGGGAGGATTGAGGAGCTT 679
||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 633 ATCTTATGGTCCTTTCCCTAAAGGTTGTTTCTTTACGTCGTCGGGTGGATTGAGGAGCTT 692
Query 680 CGAGCACCCAAAGAACGAGTTGAAGCCAGTGCCGAGAGTGGACAGCTCGGGAGACGTGTG 739
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 693 TGAGCACCCAAAGAACGAGTTGAAGCCAGTGCCGAGAGTGGACAGCTCAGGTGACGTGTG 752
Query 740 TGGTGCAACTTTCAAGGTTGACGCTGAGACTAAGAGAGAGGGTACCAAAATGCCTAGAGT 799
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TGGTGCAACCTTCAAGGTTGACGCTGAGACTAAGAGAGAGGGTACCAAAATGCCTAGAGT 812
Query 800 CGATAGCTCCCAAAATTGGGCCGGTCATATCTAAACCGGAA-TCATACAAAAAATCACAA 858
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 813 CGATAGCTCCCAAAATTGGGCCGGTCATATCTAAACCGGAAATCATACACAAA-TCACAA 871
Query 859 GCTCTGCTTCTTC-C--TCTTGTCTTGACCCCTCT-TT-CGTTACATGTTTTGAGTTACA 913
|||| || ||||| | |||||||||| ||||||| || |||||||||||| ||||||||
Sbjct 872 GCTCAGCATCTTCTCCCTCTTGTCTTGTCCCCTCTCTTTCGTTACATGTTT-GAGTTACA 930
Query 914 TTGAGACAATA-TT-CACACCACAATGTTCT---CG--TTTATGTACATGTTTGAGGTGG 966
|||||| |||| || || ||||||||||||| || ||||||||||||||||||||||
Sbjct 931 TTGAGAAAATAATTTCAAACCACAATGTTCTAAACGCGTTTATGTACATGTTTGAGGTGG 990
Query 967 GATTTGGAAAGGATGTCAGAGTTTTGTGAAACTTTGGAACCATGAGACTA---GACTTTT 1023
||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||
Sbjct 991 GATTTGGAAAGGATGTC-GAGTTTTGTGAAACTTTGGAATTACGAGACTACTAGACTTTT 1049
Query 1024 GTTTCTCTGTTTGCGTTTCTTAAAT-AATTAAATAAATAAGTTTTTGTTTCAT 1075
|||||||||||| |||||||||||| ||| |||||||||||||||| ||||||
Sbjct 1050 GTTTCTCTGTTTACGTTTCTTAAATCAAT-AAATAAATAAGTTTTTATTTCAT 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52660371705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5