BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494624
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43820.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2061 0.0
AT5G43822.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 651 0.0
> AT5G43820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:17618948-17620588 FORWARD LENGTH=1641
Length=1641
Score = 2061 bits (1116), Expect = 0.0
Identities = 1405/1540 (91%), Gaps = 37/1540 (2%)
Strand=Plus/Plus
Query 1 ATGCTTAAGAGATGGAACATAGTTAAGGAATCACTGCGTCGCGTTCTTCGTAGTGATGTA 60
||||||| ||||||||||||||||| ||||| || |||||||||| | | |||||| ||
Sbjct 1 ATGCTTAGGAGATGGAACATAGTTATTGAATCGCTACGTCGCGTTCATAGCAGTGATTTA 60
Query 61 GAAACCCTAATTTCGGGTGCGTTACT-CAATCGCACTGTTTGCACAGCTTCAGAATCATT 119
|||| ||||||||||| | | || | |||||| || |||||||||| |||||||||||
Sbjct 61 GAAAACCTAATTTCGGCTTCCCTA-TACAATCGAACACTTTGCACAGCCTCAGAATCATT 119
Query 120 G--T-A------TCTTGATGAGAGTTATGTTCTGGCTGAACTATCTTCATTGCTTCCAA- 169
| | | | ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 120 GAATCATGGTGTTGTTGATGAGAGTTATGTTCTAGCTGAATTATCTTCATTGCTTCCAAT 179
Query 170 TT--TC--AT----CCTCATTGGT-GAAGGAAGACAATTATAGCTCAAGGAATCAAGTAT 220
|| || || ||||| | || ||||||||| | |||||||| ||||||||||
Sbjct 180 TTCATCTAATAAAACCTCAGT-GTCAAAGGAAGAC-A--GTAGCTCAAAGAATCAAGTAG 235
Query 221 CTATTGATTCGTTTTTGTC-GCCAGAGGAGAAACTTAGAGGTGTGTTTCTTCAGAAATTG 279
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 236 CTATTGATTCGTTTTTGTCAG-CAGAGGACAAACTTAGAGGTGTGTTTCTTCAGAAATTG 294
Query 280 AAAGGGAAATCTGCGATACAGAATTGTTTGTCTAGTCTTGGTATTGATTTGAGTATTGAC 339
||||| || ||||| || ||||| ||||| |||||||||||||| |||||||||||||
Sbjct 295 AAAGGCAAGTCTGCTATTCAGAAGAGTTTGAGTAGTCTTGGTATTGGTTTGAGTATTGAC 354
Query 340 ATTG-TGTCCGATGTTTTGAATCGAGGGAATTTAAGCGGTGAAGCGATGGTTACGTTTTT 398
|||| || ||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 355 ATTGTTG-CCGATGTATTGAATCGAGGGAATTTAAGCGGCGAAGCGATGGTAACGTTCTT 413
Query 399 TAATTGGGCGATTCGTGAGCCTGGTGTGAGTAAAGATGTTGATAGCTATTGTGTGATTCT 458
| |||||||| |||||||||||||||||| ||||||||||| |||||| |||||||| |
Sbjct 414 TGATTGGGCGGTTCGTGAGCCTGGTGTGACTAAAGATGTTGGTAGCTACAGTGTGATTTT 473
Query 459 AAGAGCGTTAGGAAGGAGGAAGTTTTTCTCTTTTATGATGGATGTTTTACGGGGAATGGT 518
|||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||
Sbjct 474 AAGAGCGTTAGGAAGGAGAAAGCTTTTCTCTTTTATGATGGATGTTCTAAAGGGAATGGT 533
Query 519 GTGTGAAGGGGTTAATCCTAATCTGCG-GTGTTTAATC-ATTGCTATGGATAGCTTTGTT 576
|||||||| ||||||||| ||||| | |||||||| | |||||||||||||||||||||
Sbjct 534 ATGTGAAGGTGTTAATCCTGATCTG-GAGTGTTTAA-CTATTGCTATGGATAGCTTTGTT 591
Query 577 AGGGTTCATTATGTGCGTAGAGCGATAGAGTTGTTTGAGGAAAGTGAAAGTTATGGGGTG 636
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 592 AGGGTTCATTATGTGCGTAGAGCGATAGAGTTGTTTGAGGAAAGTGAAAGTTTTGGGGTG 651
Query 637 AAATGTAGTACTGAGTCTTTCAATGCATTGTTGCGGTGTCTCTGCGAGCGTTCGCATGTG 696
|||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||
Sbjct 652 AAATGTAGTACTGAGTCTTTCAATGCATTGTTACGGTGTCTATGTGAGCGTTCACATGTG 711
Query 697 AGTGCTGCTAACTCGGTGTTTAATGCAAAGAAAGGTAAAATACCATTTGACAGTTGTAGT 756
|||||||| || || || |||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 712 AGTGCTGCAAAGTCAGTATTTAATGCTAAGAAAGGTAATATACCTTTTGATAGTTGTAGT 771
Query 757 TATAACATTATGATTAGTGGGTGGTCGAAGCTCGGTGAGATTGAAGGA-ATGGAAAAGGT 815
|||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||
Sbjct 772 TATAACATTATGATTAGTGGGTGGTCAAAGCTCGGTGAGGTTGAA-GAGATGGAAAAGGT 830
Query 816 TTTGAAGGAGATGGTGGAGGGTGGAATCGGTCCTGACTGTTTGTCTTACAGCCACCTTAT 875
||||||||||||||||||| ||||| | |||||||||||||||||||| ||||| |||||
Sbjct 831 TTTGAAGGAGATGGTGGAGAGTGGATTTGGTCCTGACTGTTTGTCTTATAGCCATCTTAT 890
Query 876 TGAAGGGTTGGGAAGAGCTGGTCGTATCAATGATTTTGTTGAGATCTTTGATAATATAAA 935
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 891 TGAAGGGTTGGGAAGAACTGGTCGTATCAATGATTCTGTTGAGATCTTTGATAATATAAA 950
Query 936 ACACAAGGGTAGTGTTCCAGACGCAAATGTTTACAACGCTATGATCTGTAATTTCATATC 995
||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 951 ACACAAGGGTAATGTTCCTGATGCAAATGTTTACAATGCTATGATCTGTAATTTCATATC 1010
Query 996 TGCTCGAGATTTTGATGAATCTATGAGGTACTACCGAAGGATGCTGGATGAGGAATGTGA 1055
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TGCTCGAGATTTTGATGAGTCTATGAGGTACTACCGAAGGATGCTGGATGAGGAATGTGA 1070
Query 1056 ACCTAACTTGGAAACCTATTCCAAGCTTGTTTCTGGGCTCATTAAAGGCCGTAAGGTTTC 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 ACCTAACTTGGAAACCTATTCCAAGCTTGTTTCTGGGCTCATTAAAGGCCGTAAGGTTTC 1130
Query 1116 TGATGCGCTTGAGATATTCGAAGAGATGTTGTCAAGAGGGATTCTTCCCACCACAGGACT 1175
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1131 TGATGCGCTTGAGATATTCGAAGAGATGTTATCAAGAGGGGTTCTTCCCACCACAGGGCT 1190
Query 1176 CATTACCTCTTTCCTCAAGCCGCTTTGCAGCTACGGTCCACCACATGCAGCAATGGTTAT 1235
||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1191 TGTTACCTCTTTCCTCAAGCCTCTTTGCAGCTATGGTCCACCACACGCTGCAATGGTTAT 1250
Query 1236 TTATCAGAAATCAAGAAAAGCCGGGTGTAGGATATCAGAAAGCGCATATAAGCTGTTGCT 1295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CTATCAGAAATCAAGAAAAGCCGGGTGTAGGATATCAGAAAGCGCATATAAGCTGTTGCT 1310
Query 1296 TAAGCGGCTATCAAGATTTGGAAAATGTGGGATGCTGTTGAACGTGTGGGATGAAATGCA 1355
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1311 TAAGCGGCTATCAAGATTTGGAAAATGCGGGATGCTGTTGAACGTATGGGATGAAATGCA 1370
Query 1356 AGAGTGTGGATATCCTTCTGACGTGGAAGTGTACGAGTATATTGTCGATGGGCTCTGTAT 1415
||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1371 AGAGTCTGGATATCCTTCTGACGTGGAAGTCTACGAGTATATTGTGGATGGGCTCTGTAT 1430
Query 1416 CATTGGGCATCTAGAGAATGCTGTGCTTGTGATGGAAGAAGCCATGCGTAAAGGGTTTTG 1475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1431 CATTGGGCATCTAGAGAATGCTGTGCTTGTGATGGAAGAAGCTATGCGTAAAGGGTTTTG 1490
Query 1476 CCCAAACCGCTTTGTTTATAGTAGGCTTAGCA-TAA-TTA 1513
|||||||||||||||||||||||||||||||| ||| |||
Sbjct 1491 CCCAAACCGCTTTGTTTATAGTAGGCTTAGCAGTAAATTA 1530
> AT5G43822.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:17618805-17621979 FORWARD LENGTH=780
Length=780
Score = 651 bits (352), Expect = 0.0
Identities = 397/418 (95%), Gaps = 5/418 (1%)
Strand=Plus/Plus
Query 1505 GCA-TAATTAGGAAATGGCAGCAGAAGTTCAGAAAAGCCAAGGAGGAGATGGAGAAGTGG 1563
||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 88 GCAGTAATTAGGAAATGGCAGCAGAAGTTCAGAAAAGGGAAGGAGGAGATGGAAAAGTGG 147
Query 1564 GAGGCACTTCAAGTTCGATGGGTTTCCCTCTTCAGGAACGCTTCTTCTATTACT-CAGAG 1622
||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||
Sbjct 148 GAGGCACTTCAAGTTCGATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCA-TCCAGAG 206
Query 1623 ATTACAGGATATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATTGA 1682
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 ATTACAGGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATTGA 266
Query 1683 AGACGCGGTTGTGCAGCAACAGATGGGTCAACTGGAGTCTCTATTGCGTTCCATGAAAAA 1742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AGACGCAGTTGTGCAGCAACAGATGGGTCAACTGGAGTCTCTATTGCGTTCCATGAAAAA 326
Query 1743 CGTTATGGAGGAATTATGGGGCTGTGTTTTGACATTTGAGAAGCTACATCGAGACGGTTT 1802
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 327 CGTTATGGAGGAATTCTGGGGCTGTGTTTTGACATTTGAGAAGCTACATCGGGACGGTTT 386
Query 1803 GCAGTTAC-TCGAAGTTGAATCGAGCAAGAGGCGAGTAGAGGAACGAATTGGAGTAAAAC 1861
||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 387 ACAGTTACGT-GAAATTGAATCAAGCAAGAGGCGAGTAGAGGAACGAATTGGAGTAAAAC 445
Query 1862 CTTGCATTGCTGATTGCTTGGAGGGACTTTCTATTCTTTTTGACATGCATCAAGCAGA 1919
| |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 446 CGTGCATTACTGATTGCTTGGAGGGACTTTCTATTCTTTATGACATGCATCAATCAGA 503
Score = 163 bits (88), Expect = 6e-39
Identities = 102/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1920 TCCTGGTGATCTAAACGCGCTACAGTACTTCGCGGTTGATCAGCCTAATATCCCAAAAGA 1979
|||||||||||||||||||||||| ||| ||| |||||||||||| |||||||| |||||
Sbjct 561 TCCTGGTGATCTAAACGCGCTACAATACCTCGTGGTTGATCAGCCGAATATCCCGAAAGA 620
Query 1980 AGAAGTGCAACACATTTTCGATGTCATATTCGCGGAAGAGATCAAATGA 2028
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TGAAGTACAACACATTTTCGATGTCATATTCGCGGAAGAGATCAAATGA 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100501491090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5