BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494637
Length=2787
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43670.1 | Symbols: | Sec23/Sec24 protein transport family ... 4329 0.0
> AT5G43670.1 | Symbols: | Sec23/Sec24 protein transport family
protein | chr5:17538761-17541934 REVERSE LENGTH=2850
Length=2850
Score = 4329 bits (2344), Expect = 0.0
Identities = 2665/2816 (95%), Gaps = 37/2816 (1%)
Strand=Plus/Plus
Query 1 ATCAAAGAATGTTTTCTGATTCTTCGCCGGCCGGaaaaaaaTCTACAAACTCCGGTGA-A 59
||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |
Sbjct 15 ATCAAAGAATGTTTTCTAATCCTTCGCCGGCCGGAAAAAAATCTACAAACTCCGGCGATA 74
Query 60 ------AC-CC--TT-T-AC-T--CCGA-TTA--AAA-CAAACTTGATCTGAGAATCTTC 101
|| || || | || | |||| | ||| ||||||||||||||||||||||
Sbjct 75 CCCTCTACTCCGATTCTCACTTCCCCGAGAAACCAAATCAAACTTGATCTGAGAATCTTC 134
Query 102 ATCAACACTTTCAGATCCATGAAAACGGATTTGAAAATCCACAATCAGTAAAATCGAAGA 161
| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 135 AACAACACTTTCAGATCCATGAAAACGGATTTGAAAATCCCCAATCAGTGAAATCGAAGA 194
Query 162 TCTAGTTATGGATTTCTTAGAGCTAGAAGCGATCGAAGGTTTAAGATGGTCATGGAACTC 221
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 195 TCTAGTTATGGATTTCTTAGAGCTAGAAGCGATCGAAGGATTAAGATGGTCATGGAACTC 254
Query 222 ATGGCCAACTACAAAATCCGATTGCGAATCTCTCGTTGTTCCATTAAGTATCATGTATAC 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 ATGGCCAACTACAAAATCCGATTGCGAATCTCTCGTTGTTCCATTAAGTATCATGTATAC 314
Query 282 TCCATTGATGCAATTCTCTGAGCTTCCAACGATTCCTTATGATCCATTGATTTGTTCTCG 341
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TCCATTGATGCACTTCTCTGAGCTTCCAACGATTCCTTATGATCCATTGATTTGTTCTCG 374
Query 342 TTGTGGAGCTGTGTTAAACCCTTACGCTCGTGTTGATTATCAATCTCGAATCTGGTCTTG 401
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 375 TTGTGGAGCTGTGTTAAACCCTTACGCTCGTGTTGATTACCAATCTCGAATCTGGTCTTG 434
Query 402 TCCCTTTTGCTTTCACAAAAACCTTTTCCCTCGTTCTTACTCTGGAATCACTGAAACTAA 461
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 435 TCCCTTTTGTTTTCACAAAAACCTTTTCCCTCGTTCTTACTCCGGAATCACTGAAACTAA 494
Query 462 TCTCCCGGCGGAGCTTTTTCCGACTTATAGCGCTGTTGAATACTCTCCGCCGCTGCCGCG 521
||||||||||||||||||||||||||||||||| |||||||||||||||| | | ||||
Sbjct 495 TCTCCCGGCGGAGCTTTTTCCGACTTATAGCGCCGTTGAATACTCTCCGCTACCGTCGCG 554
Query 522 T-AAGTCGGGTTCAGCGACGACGACTCCGACTGCTGGTGGGAGTTGGAGTAATGGGTTTA 580
| || ||||||||| |||||||||||||| |||| || ||||||||||||||||||||
Sbjct 555 TCAA-TCGGGTTCAAATACGACGACTCCGACGGCTGCTGCGAGTTGGAGTAATGGGTTTA 613
Query 581 ATCAAGGGCTTAGATCAATGTCTTCGAATTCGTCATTTTCGTCTCTTGCTTC-T-T-CTG 637
|||||||| ||||||||||| ||||||||||||| ||||| ||||||||||| | | |||
Sbjct 614 ATCAAGGGGTTAGATCAATGCCTTCGAATTCGTCTTTTTCTTCTCTTGCTTCTTCTACTG 673
Query 638 TTGGAGGTGGTGGTGGTGTGATTAGTGAGCTTGGACCTGCGTTTGTGTTTGTTGTTGATG 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TTGGAGGTGGTGGTGGTGTGATTAGTGAGCTTGGACCTGCGTTTGTGTTTGTTGTTGATG 733
Query 698 CGTCTATGGTGGAGGATGAGTTAAGAGCTGTGAGAAGTGA-GCTTTTGTTTGTGATTGAG 756
| |||||||| ||||||||||||||||||||| | ||||| | |||||||||| |||||
Sbjct 734 CTTCTATGGTTGAGGATGAGTTAAGAGCTGTGCGGAGTGATG-TTTTGTTTGTTATTGAA 792
Query 757 CAGTTGCCTGAGAATTGTTTGGTGGCTTTGATTACTTTTGATTCTATGGTTAGGGTTTAT 816
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 CAGTTGCCTGAGAATTGCTTGGTGGCTTTGATTACTTTTGATTCTATGGTTAGGGTTTAT 852
Query 817 GATTTGGGTTTCTCTGAATGCTCTAAAGTTGTTGTTTTTCATGGTGAGCGTGATCTTTCT 876
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 853 GATTTGGGTTTCTCTGAATGCTCTAAAGTTGTTGTCTTTCATGGTGAACGTGACCTTTCT 912
Query 877 CCAGACCAGATACAACAATTTCTGGGACTTGGATATTCGAAGCAGCTTCATCATGGAAAG 936
||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct 913 CCAGACCAGATACAACAATTTCTCGGACTTGGATATTCTAAGCAGTTTCATCATGGAAAG 972
Query 937 ATGTCAGCGATTCGGAAGCAAAGTTTCTTACTTCCGTTGGCGGAATGTGAGTTTAACTTA 996
|||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 973 ATGTCAGCGATTCGAAAGCAAAGTTTCTTGCTTCCGTTGGTGGAATGTGAGTTTAACTTA 1032
Query 997 ACATGTGCGTTTGAAGAAATTGTTCCCTTGGTTGATGTCAAACCGGGTCATCGGCCTCAT 1056
|||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1033 ACATCTGCGTTTGAAGAAATCATTCCCTTGGTTGATGTCAAACCAGGTCATCGGCCTCAT 1092
Query 1057 AGGTCAACCGGTGCTGCGATCTCAACAGCATTGGGACTGCTCGAGGGATGTTCTGTAACC 1116
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1093 AGGTCAACTGGTGCTGCGATCTCAACAGCATTAGGACTGCTCGAGGGATGTTCTGTAACC 1152
Query 1117 ACGGGTTCTCGGATTATGGTTTTCACATCGGGGCTTACTACAAGAGGCCCTGGGATCATT 1176
|| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1153 ACTGGTTCTCGGATTATGGTTTTCACATCGGGGCCTGCTACAAGAGGCCCTGGGATCATC 1212
Query 1177 GTGGACTCTGATTTAAGTAATTCGATCAGAACTCACAGAGATATTATCACTGGTCAGGTG 1236
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1213 GTGGACTCTGATTTAAGTAATTCGATCAGAACTCACAGGGATATTATCACTGGTCACGTG 1272
Query 1237 TCTTATTACGATAAATCTTGCGGGTTTTACAAGAAACTAGCAAAAAGGCTATGCGATACG 1296
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||| ||
Sbjct 1273 TCTTATTACGATAAATCTTGCGGGTTTTACAAGAAACTAGCGAAGAGGCTCTGTGATTCG 1332
Query 1297 TCTGCTGCTCTAGATGTGTTCGCTTGCTCTCTTGACCAAGTTGGAGCAGCGGAAATGAGA 1356
|| | || ||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1333 TCCGTTGTTCTCGATGTGTTCGCTTGCTCTCTTGACCAAGTTGGAGCAGCGGAACTGAGA 1392
Query 1357 TATGCAGTGGAAATGTCTGGTGGATTTCTCTTACTGGGAGAGACATTTGAGTCCGAGCAA 1416
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1393 TACGCAGTGGAAATGTCTGGTGGATTTCTCTTACTGGGAGAGACATTTGAATCCGAGCAA 1452
Query 1417 TTCAAAAAATGTCTCAGACATATATTCATCCGCGATGCAGATGGGAACCTGAGTATGTAC 1476
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TTCAAAAAATGTCTGAGACATATATTCATCCGCGATGCAGATGGGAACCTGAGTATGTAC 1512
Query 1477 TTTGATGTGTCTTTAGAAGTTGTGACGACTAAGGATATGAGAATCTGCGGTGCACTCGGT 1536
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1513 TTTGATGTGTCTTTGGAAGTTGTGACGACTAAGGATATGAGAATCTGCGGCGCACTTGGT 1572
Query 1537 CCGGTTGTGTCGCTAAGACAGAAGAACGATATAGTGAGCGAAACAGAGATTGGTGAAGGC 1596
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1573 CCGGTTGTGTCGCTAAGACAGAAGAACGATATAGTGAGCGAAACAGAGATCGGTGAAGGC 1632
Query 1597 GGAACATATATGTGGAAAACGAGCACTGTCACGAATAAGACATGTGTGTCATTCTTGTTT 1656
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1633 GGAACATATATGTGGAAAACGAGCACTGTCACGAATAAGACTTGTGTTTCATTCTTCTTT 1692
Query 1657 CATGTGAGCAACGAACAGAATCGAAAACCGCAGCCTGGTTCCGCGTTCTTCATTCAGTTC 1716
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1693 CATGTGAGCAACGAACAGAATCGAAAACCGCAGCCAGGTTCTGCGTTCTTCATTCAGTTC 1752
Query 1717 ATTACTCGGTATCGGTATGGAAATGGAGGAATGAGGAAACGGGTTACAACGGTTGCTAGA 1776
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1753 ATTACTCGGTATCGGTATGGAAATGGAGCAATGAGGAAACGGGTTACAACGGTTGCTAGG 1812
Query 1777 AGATGGGTTGCTGGAAAATCGCCAGAAATCTCGTCAGGTTTTGATCAAGAAACAGCTGCT 1836
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1813 AGATGGGTTGCTGGTAAATCGCCAGAAATCTCGTCAAGTTTTGATCAAGAAACAGCTGCG 1872
Query 1837 TCAGTTATGGCGCGGCTTGCAATTAACCGAGCAGAGGAGTGTTACGCAAGAGACGTTATT 1896
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1873 TCAGTTATGGCGCGGCTTGCAATTAACCGAGCAGAGGAGTGTCACGCTAGAGACGTTATT 1932
Query 1897 AGGTGGTTAGATGACGGTTTAATCCGCTTTGCTTCACGGTTTGGAGATTATATTCAAGAA 1956
| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1933 ACGTGGTTAGATAACGGTTTAATCCGGTTTGCTTCACGGTTTGGAGATTATATTCAAGAA 1992
Query 1957 GATCCATCTTCTTTCAGGTTGACTCCAAACTTCTCCCTTTATCCTCAGTTCATGTTCTAT 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 GATCCATCTTCTTTCAGGTTGACTCCAAACTTCTCCCTTTATCCTCAGTTCATGTTCTAT 2052
Query 2017 CTACGAAGATCACAGTTTCTTGACGTCTTCAACAATTCCCCGGATGAAACCGGTTTTTTC 2076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2053 CTACGAAGATCACAGTTTCTTGACGTCTTCAACAATTCCCCGGATGAAACCGGTTTCTTC 2112
Query 2077 CGGTTAATGTTAAACCGGGAAGGAGTGGTAAACTCAATCATCATGATTCAACCAACGCTT 2136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 CGGTTAATGTTAAACCGGGAAGGAGTGGTAAACTCAATCATCATGATTCAACCAACGCTT 2172
Query 2137 CTCCGGTATTCATTCGACGGACCGCCCGTTCCAGTCCTCCTCGATATCCGGTCAGTGACT 2196
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2173 CTCCGGTATTCATTCGACGGACCACCGGTTCCAGTCCTCCTCGATATCCGGTCAGTGACT 2232
Query 2197 GCAGATGTGATTTTGCTATTCGATTCATACTTCTACGTGGTTATCCACCATGGATCAAAA 2256
|||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2233 CCAGACGTAATTTTGCTATTTGATTCATACTTCTACGTGGTTATCCACCATGGATCAAAA 2292
Query 2257 ATCGCCCAATGGAGGAAACTCGAGTATCATAAAGACCCAAGCCACGAGACTTTCCGGAAC 2316
|||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 2293 ATCGCCCAATGGAGGAAACTTGAGTATCATAAAGATCCATCCCACGAGACTTTCCGGAAC 2352
Query 2317 CTTCTGGAAGCACCAGAAATCGATGCGGCGCAGTTAGTGACTGATAGGATTCCAATGCCA 2376
|||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct 2353 CTTCTGGAAGCACCGGAAATCGATGCAGCGCAGTTAGTAACTGATCGGATTCCAATGCCA 2412
Query 2377 CGGATTGTACGGTGTGACCAGCACGGTAGTCAAGCTCGGTTTCTTCTTGCCAAGCTCAAT 2436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2413 CGGATTGTACGGTGTGACCAGCACGGTAGTCAAGCTCGGTTTCTTCTTGCCAAGCTCAAT 2472
Query 2437 CCTTCAGTAACTCAGAAAACAGATCATACCGGTGGTTCAGATATTGTTCTCACTGATGAT 2496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2473 CCTTCAGTAACTCAGAAAACAGATCATACCGGTGGTTCAGATATTGTTCTCACTGATGAT 2532
Query 2497 TTGAGTCTTCAAGATTTCCTAGAAGATTTGCAATCTCTGGCAGTGAAAGGCTGAG-AAAT 2555
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2533 ATGAGTCTTCAAGATTTCCTAGAAGATTTGCAATCTCTGGCAGTGAAAGGCT-AGGAAAT 2591
Query 2556 GTGGCAGCAAACCTGTAAA-TTGGTTTGG-TTTTGAATCGGTACTGGTAATGGTTTTGAC 2613
||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||
Sbjct 2592 GTGGCAGCAAACCTGTAAAATTGGTTTGGATTTT-AATCGGTACAGGTAATGGTTTTGAC 2650
Query 2614 TAGTTGGGTT-TCACGAACAATTGATATTGGTATTTTAGTCATCATCTACACCTGT-TAT 2671
|| ||||||| | || ||||||| |||||||||||| |||||| |||||||||| | |||
Sbjct 2651 TAATTGGGTTAT-ACAAACAATTAATATTGGTATTT-AGTCATTATCTACACCT-TATAT 2707
Query 2672 TGTTAGGTTTTCTGAATCTTTTTAGATTGAAATGGAAATTCGAAATGTATGATTTGGTTT 2731
||| |||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||
Sbjct 2708 TGTCAGGTTTTCTGAATCTTAT-AGATTGATATGGAAATTCTAAATGTATGATTTGGTTT 2766
Query 2732 GGACCTGATTTATTATACAGAAAGGTTTTGATCTTTGTGAACACTACTGTAATTGT 2787
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2767 GGACCTGATTTGTTATACAGAAAGGTTTTGATCTTTGTGAACACTACTGTAATTGT 2822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138460762680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5