BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494639
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptiona... 1688 0.0
AT1G04240.1 | Symbols: SHY2, IAA3 | AUX/IAA transcriptional reg... 416 2e-115
> AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional
regulator family protein | chr5:17550233-17551581 FORWARD
LENGTH=1168
Length=1168
Score = 1688 bits (914), Expect = 0.0
Identities = 1026/1077 (95%), Gaps = 20/1077 (2%)
Strand=Plus/Plus
Query 1 GCCTCAAAGTTGCTGCTACTGTTTACTACCCGACAGCTTTAGCTTTTGCCTTTGTCCTTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCTCAAAGTTGCTGCTACTGTTTACTACCCGACAGCTTTAGCTTTTGCCTTTGTCCTTA 60
Query 61 AATCAAGTTAATCCCATTTTTTCTAAATTACCAAAAAAGTGACTTTTCAATTCCTATAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCAAGTTAATCCCATTTTTTCTAAATTACCAAAAAAGTGACTTTTCAATTCCTATAAA 120
Query 121 ACACTCTTCTTCACAAAGCCTCTTATCTCATCAACAAGTCTTTCTCTCTCT--AGACAAC 178
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 ACAATCTTCTTCACAAAGCCTCTTATCTCATCAACAAGTCTTTCTCTCTCTCTAGACAAC 180
Query 179 CATAAGAACACAAAACACACAAAAACAAAGT--TTCTTTCTTTGAAGA-GAAATGGAGAA 235
|| ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 181 CACAAGAACACAAAACACACAAAAACAAAGAGGTTCTTTCTTTGAAGAAGAAATGGAAAA 240
Query 236 AGTTGATGTTTATGATGAGTTTGTTAACCTTAAGGCAACAGAGCTGAGATTGGGATTACC 295
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 241 AGTTGATGTTTATGATGAGCTTGTTAACCTAAAGGCAACAGAGCTGAGATTGGGATTACC 300
Query 296 AGGGACAGAAGAAACTGTTTCTTGCGGAAAAAGCAACAAAAGAGCTTTACCT-AATGATA 354
|||||||||||||||||||||||| ||||||||||||||||||| ||||||| || | ||
Sbjct 301 AGGGACAGAAGAAACTGTTTCTTGTGGAAAAAGCAACAAAAGAGTTTTACCTGAA-GCTA 359
Query 355 CTGAGAAAGAGATTGAATCCACTGGAAAAACCGAAACCGCTTCTCCTCCAAAGGCTCAGA 414
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 CTGAGAAAGAGATTGAATCCACTGGAAAAACTGAAACCGCTTCTCCTCCAAAGGCTCAGA 419
Query 415 TTGTTGGATGGCCACCAGTTAGATCTTACAGAAAGAACAATATTCAAACAAAGAATAATG 474
||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||
Sbjct 420 TTGTTGGATGGCCACCAGTTAGATCTTACAGAAAGAACAATGTTCAGACAAAGAAGAGTG 479
Query 475 AATCTGAAGGTCAAGGAAACTATGTGAAAGTGAGTATGGATGGTGCTCCATATCTAAGGA 534
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 AATCTGAAGGTCAAGGAAACTATGTGAAAGTAAGTATGGATGGTGCTCCATATCTAAGGA 539
Query 535 AGATAGATCTAACTATGTATAAACAATACCCAGAGTTGATGAAATCACTTGAAAACATGT 594
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 AGATAGATCTAACGATGTATAAACAATATCCAGAGTTGATGAAATCACTTGAAAACATGT 599
Query 595 TTAAATTCTCTGTGGGAGAATATTTTGAGAGAGAAGGATATAAAGGCTCAGACTTTGTTC 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 TTAAATTCTCTGTGGGAGAATATTTTGAGAGAGAAGGATATAAAGGCTCAGACTTTGTAC 659
Query 655 CTACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATGT 714
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTACTTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATGT 719
Query 715 TTGTTTCGTCTTGTAAGAGGTTAAGGATCATGAAAGGATCAGAAGTGAAAGGTTTAGGTT 774
|||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 720 TTGTTTCGTCTTGTAAGAGGCTAAGGATCATGAAAGGATCTGAAGTTAAAGGTTTAGGTT 779
Query 775 CTGGTG-T-TTGATACA--CCTAATTGAGAGACTAAAGATCAAAGAGAAAGATTCAAAAA 830
||||| | || | ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 GTGGTGGTCTTTA-ACAAACCTAATTGAGAGA-TAAAGATCAAAGAGAAAGATTCAAAAA 837
Query 831 CAGAGtttttttGTTCTGTTTCTTGAAACAGAGTAAGTATAGCTCTGAAACTGCTCGGGT 890
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 CAGAGTTTTTT-GTTCTGTTTCTTGAAACAGAGTAAATATAGCTCTGAAACTGCTCGGGT 896
Query 891 TCTCGGGGAGAGATGATGTTTCATACAATCATACTTTGTGAATGTTTACCTCATCGGTAA 950
||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 897 TCTTGGGGAGAGATG-T-TT-CATACAATCATACTTTGTGAATGTTTACCTCATCGGTAA 953
Query 951 AAAGAGTGATGCTTAAAATGGTCTTAAGCATATAAGTGTGAGAAAGATCTAAATCTAAAC 1010
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 954 AAAGAGAGATGCTTAAAATGGTCTTAAGCATAAAAGTGTGAGAAAGATCTAAATCTAAAC 1013
Query 1011 TTTAGCTGTAACTCTGTCTGC-TTAAAG-GAAAAGGTTTTGTGATGTTAGAAAGATC 1065
||||||||||||||||||| | |||||| |||| ||||||||| | |||||||||||
Sbjct 1014 TTTAGCTGTAACTCTGTCTCCATTAAAGAGAAA-GGTTTTGTGGTATTAGAAAGATC 1069
> AT1G04240.1 | Symbols: SHY2, IAA3 | AUX/IAA transcriptional regulator
family protein | chr1:1128188-1129551 REVERSE LENGTH=1178
Length=1178
Score = 416 bits (225), Expect = 2e-115
Identities = 408/493 (83%), Gaps = 26/493 (5%)
Strand=Plus/Plus
Query 312 GTTTCTTGC-GGAAAAAGCAACAA-AAGAGCTTTAC-CT-AA-TGATACTGAGAAAGAGA 366
||||||||| | || || |||||| ||||| ||| | || |||||||||||| ||||
Sbjct 317 GTTTCTTGCTGTAATAA-CAACAATAAGAG-AGTACTATCAACTGATACTGAGAAGGAGA 374
Query 367 TTGAATC--CA-C-TGGAAAAACCGAAACCGCTTCTCCTCCAAAGGCTCAGATTGTTGGA 422
||||||| || | || ||||| ||||| | |||||| |||||||||||||||||||
Sbjct 375 TTGAATCATCATCAAGG-AAAACTGAAACATCCCCTCCTCGAAAGGCTCAGATTGTTGGA 433
Query 423 TGGCCACCAGTTAGATCTTACAGAAAGAACAATATTCAAACAAAGAATAATGAATCTGA- 481
||||||||||||||||||||||| |||||||| ||||| | ||||| |||||||||||
Sbjct 434 TGGCCACCAGTTAGATCTTACAGGAAGAACAACATTCAGAGTAAGAAGAATGAATCTGAG 493
Query 482 -A-G-G--TCAAGGAAACTATGTGAAAGTGAGTATGGATGGTGCTCCATATCTA-AGGAA 535
| | | |||||||| |||||||||||| |||||||||||||| ||||| || |||||
Sbjct 494 CATGAGGGTCAAGGAATCTATGTGAAAGTAAGTATGGATGGTGCACCATA-CTTGAGGAA 552
Query 536 GATAGATCTAACTATGT-ATAAACAATACCCAGAGTTGATGAAATCACTT-GAAAACATG 593
|||||||| | | ||| | ||| |||| |||||||| | ||| | || ||| |||
Sbjct 553 AATAGATCTGAGT-TGTTACAAAGGATACTCAGAGTTGCTTAAAGCT-TTAGAAGTGATG 610
Query 594 TTTAAATTCTCTGTGGGAGAATATTTTGAGAGAGAAGGATATAAAGGCTCAGACTTTGTT 653
|| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct 611 TTCAAATTCTCTGTGGGAGAGTACTTTGAGAGAGATGGATATAAAGGTTCAGACTTTGTG 670
Query 654 CCTACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATG 713
|||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 671 CCTACTTATGAAGACAAAGATGGTGATTGGATGCTCATTGGTGATGTTCCATGGGAGATG 730
Query 714 TTTGTTTCGT-CTTGTAAGAGGTTAAGGATCATGAAAGGATCAGAAGTGAAAGGTTTAGG 772
|| | | || | || ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 731 TTCATAT-GTACGTGCAAGAGACTAAGGATCATGAAAGGATCAGAAGCCAAAGGTTTAGG 789
Query 773 TTCTGGTGTTTGA 785
| |||||| |||
Sbjct 790 CTGTGGTGTATGA 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5