BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494640
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein ... 708 0.0
AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein ... 590 5e-168
AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein ... 549 8e-156
AT5G09490.1 | Symbols: | Ribosomal protein S19 family protein ... 444 4e-124
AT1G33850.1 | Symbols: | Ribosomal protein S19 family protein ... 309 1e-83
> AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:17531302-17532370 FORWARD LENGTH=450
Length=450
Score = 708 bits (383), Expect = 0.0
Identities = 427/449 (95%), Gaps = 0/449 (0%)
Strand=Plus/Plus
Query 11 TGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTT 70
||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 2 TGGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTT 61
Query 71 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATT 130
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 62 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATCGAAGATCTTGTCAAACATT 121
Query 131 TCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGA 190
||||| | ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 122 TCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTGA 181
Query 191 TCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGA 250
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 182 TTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTGA 241
Query 251 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGTATCATTGGTGTGT 310
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 242 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTGT 301
Query 311 ACAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATTGGACATTACTTGG 370
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 302 ACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTTGG 361
Query 371 CTGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCA 430
|||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 362 CTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACCA 421
Query 431 ATTCCTCCAGGTTTATTCCTCTCAAGTGA 459
|||||||||||||||| ||||||||||||
Sbjct 422 ATTCCTCCAGGTTTATCCCTCTCAAGTGA 450
> AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2953913-2954918 REVERSE LENGTH=652
Length=652
Score = 590 bits (319), Expect = 5e-168
Identities = 405/448 (90%), Gaps = 0/448 (0%)
Strand=Plus/Plus
Query 12 GGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTTT 71
||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||
Sbjct 74 GGATCCAGAGGTTGCTGCGGCTGGAATCGTAAAAAAGAGAACGTTCAAAAAGTTTTCCTT 133
Query 72 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATTT 131
||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| |||
Sbjct 134 CAGAGGAGTCGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTTTT 193
Query 132 CAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGAT 191
| | | ||| | || ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 194 CCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGAT 253
Query 192 CAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGAG 251
||||||| |||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 254 CAAGAAACTGCGGAAAGCGAAAATTGAAGCACCAGCTGGAGAGAAGCCAGCAGCAGTGAG 313
Query 252 AACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGTATCATTGGTGTGTA 311
||| ||| | ||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 314 AACCCACCTAAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTTTA 373
Query 312 CAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATTGGACATTACTTGGC 371
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 374 CAATGGAAAGACTTTTAACCAGGTCGAGATCAAACCAGAGATGATTGGACATTACTTGGC 433
Query 372 TGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAA 431
||| || |||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 434 TGAGTTTTCAATCTCATATAAGCCTGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAA 493
Query 432 TTCCTCCAGGTTTATTCCTCTCAAGTGA 459
||||||||| ||||| ||||||||||||
Sbjct 494 TTCCTCCAGATTTATCCCTCTCAAGTGA 521
> AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2955113-2956673 REVERSE LENGTH=1163
Length=1163
Score = 549 bits (297), Expect = 8e-156
Identities = 409/463 (88%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGATGTGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAA-AAGAGAACGTTCAA 59
||||| |||||||||||||||||||| || || ||| || ||| ||||||||||||||
Sbjct 120 ATGGCTGATGTGGAACCAGAGGTTGCAGCAGCAGGAGTT-CCAAAGAAGAGAACGTTCAA 178
Query 60 GAAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCT 119
||| || | |||| |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 179 GAAATTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGATGATCT 238
Query 120 TGTCAAGCAT-TTCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAA- 177
|||||||| | ||| | | ||| |||||||||||||||||||||||||||| | ||||
Sbjct 239 TGTCAAGC-TCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGA-GAAAG 296
Query 178 CCTATGGCTTTGATCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAG 237
|||||||||||||| |||||| | ||||| ||||||| ||||||||||||||||||||||
Sbjct 297 CCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAG 356
Query 238 CCAGCAGCAGTGAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGT 297
|||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGC 416
Query 298 ATCATTGGTGTGTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATT 357
||||||||||||||||| ||||||||||| |||||||| |||||||| || |||||||||
Sbjct 417 ATCATTGGTGTGTACAATGGAAAGACTTTCAACCAAGTGGAGATCAAGCCTGAGATGATT 476
Query 358 GGACATTAC-TTGGCTGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGG 416
||||||||| ||| | || ||||| ||||| ||||| || |||||||| |||||||||||
Sbjct 477 GGACATTACCTTG-CAGAGTTCTCCATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGG 535
Query 417 TGTTGGTGCTACCAATTCCTCCAGGTTTATTCCTCTCAAGTGA 459
|||||||||||| | ||||||||||| || ||||||||||||
Sbjct 536 CGTTGGTGCTACCCACTCCTCCAGGTTCATCCCTCTCAAGTGA 578
> AT5G09490.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2952216-2953245 REVERSE LENGTH=683
Length=683
Score = 444 bits (240), Expect = 4e-124
Identities = 390/463 (84%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGATGTGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAG 60
||||| || || |||||||| ||| | || |||| || ||| ||||||||||||||
Sbjct 63 ATGGCTGAAGTCGAACCAGATGTTTCCGCAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 122
Query 61 AAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTT 120
|||||||| |||| |||||||||||||||||| ||||| |||||| |||| |||||||||
Sbjct 123 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 182
Query 121 GTCAAGCAT-TTCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACC 179
||| ||| | ||| | | ||| | | |||||| | ||||||||| || ||||| ||
Sbjct 183 GTCGAGC-TCTTCCCTTCCCGTATAAGAAGAAGGATGAGTAGAGGATTAACGAGGAAGCC 241
Query 180 TATGGCTTTGATCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCC 239
||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 242 TATGGCTCTCATCAAGAAATTGCGCAAAGCGAAACTAGATGCACCAGCTGGTGAGAAGCC 301
Query 240 AGCAGCAGTGAGAACACACT-TGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGTA 298
| || ||||||||| || | | ||||||||| | ||| ||||||||||||||||||| |
Sbjct 302 CGAAGTAGTGAGAACCCA-TCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCA 360
Query 299 TCATTGGTGTGTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATTG 358
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 TCATTGGTGTGTACAATGGAAAGACTTTTAACCAAATCGAGATCAAACCGGAGATGATTG 420
Query 359 GACATTAC-TTGGCTGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGGT 417
|||||||| ||| | |||||||||||| | |||||||| |||| ||| || | ||| |||
Sbjct 421 GACATTACCTTG-CGGAATTCTCAATCACTTACAAACCCGTTAGGCACGGCAAGCCCGGT 479
Query 418 GTTGGTGCTAC-CAATTCCTCCAGGTTTATTCCTCTCAAGTGA 459
||||||||| || | |||| |||||||| ||||||||||||
Sbjct 480 CATGGTGCTACACACT-CCTCTAGGTTTATCCCTCTCAAGTGA 521
> AT1G33850.1 | Symbols: | Ribosomal protein S19 family protein
| chr1:12287913-12288210 REVERSE LENGTH=213
Length=213
Score = 309 bits (167), Expect = 1e-83
Identities = 190/201 (95%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 11 TGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAA-CGTTCAAGAAGTTTTCT 69
||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||
Sbjct 2 TGGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAATC-TTCAAGAAGTTTTCT 60
Query 70 TTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCAT 129
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 TTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGAAGATCTTGTCAAACAT 120
Query 130 TTCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTG 189
|||||| | ||| ||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTTACCAGGAAACCTATGGCTTTG 180
Query 190 ATCAAGAAATTGCGCAAAGCG 210
|||||||||||||||||||||
Sbjct 181 ATCAAGAAATTGCGCAAAGCG 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21866470815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5