BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494642
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydr... 2769 0.0
> AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydrolase
| chr5:17512476-17515495 FORWARD LENGTH=1821
Length=1821
Score = 2769 bits (1499), Expect = 0.0
Identities = 1687/1775 (95%), Gaps = 24/1775 (1%)
Strand=Plus/Plus
Query 1 AACAAAACACTCTGTCAGATTCCCACTAAGTTTTTGAGGATTCCCCaaaaaaaC-AATTT 59
||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||
Sbjct 1 AACAAAACACTCTGTCAGATTCCCACTTAG-TTTTGAGGATTCCCC-AAAAAACAAATTT 58
Query 60 GGAC-A--ATAATGCTCAAAATTTAATTAATTAA-TTTCCCCAAAAATATAATTACCAAA 115
|||| | |||| ||||||||||||||||| ||| ||||||| ||| |||||||||||||
Sbjct 59 GGACAATGATAACGCTCAAAATTTAATTAA-TAAGTTTCCCC-AAAGTATAATTACCAAA 116
Query 116 TTATGAAT---T-GTATTGCTCTCTCTCAGAATCAAAACACAGAA-GAGaaaaaaaTCAA 170
|||||||| | |||||| |||||||||||||||||||| ||| ||||||||||| ||
Sbjct 117 TTATGAATGAATAGTATTG--CTCTCTCAGAATCAAAACACTGAAGGAGAAAAAAATAAA 174
Query 171 AATGGAATCTTTGGAACGCTTCCTCTGCTCTATTGCTCTTCTTGTTCTCTCCCTTCTTCT 230
||||||||||||| |||| ||||||||||||||||| |||||| || |||||||||||||
Sbjct 175 AATGGAATCTTTGAAACGTTTCCTCTGCTCTATTGCGCTTCTTCTTATCTCCCTTCTTCT 234
Query 231 ACCTTCAAACTTAGCTcaacaacaacaacaacaTGAATCAATTAGAACAATGGAAGATTT 290
|||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 235 ACCTTCAAGCTTAGCT---CAACAACAACAACATGAATCAATCAGAACAATGGAAGATTT 291
Query 291 TTCCGGATGCCCAATTCACGAACCGGGTCAATTCGGTTCCATCAATCTCGCTTCTTCACT 350
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTCCGGATACCCAATTCACGAACCGGGTCAATTCGGTTCCATCAATCTCGCTTCTTCACT 351
Query 351 CTCCGTTGATGCTCCAGGACTACAAAACCAGATAGATGAGCTTTCTAATTTCTCTGATGC 410
||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 352 CTCCGTTGATGCTCCAGGACTGCAAAACCAGATAGATGAGCTATCTAGTTTCTCTGATGC 411
Query 411 TCCTTCTCCATCAGTCACTAGAGTTCTTTACACTGATAAAGATGTCTTGGCTCGAAGGTA 470
|||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 412 TCCTTCTCCATCAGTCACCAGAGTTCTTTATACTGACAAAGATGTCTCGGCTCGAAGGTA 471
Query 471 TGTGAAGAATTTGATGGTACTTGCTGGTCTTACTGTTAGAGAAGATGCTGTTGGTAACAT 530
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TGTGAAGAATTTGATGGCACTTGCTGGTCTTACTGTTAGAGAAGATGCTGTTGGTAACAT 531
Query 531 ATTTGGCAAATGGGATGGTTCAGAGCCAAATCTTCCTGCTGTAGCGACTGGTTCTCATAT 590
|||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||
Sbjct 532 ATTTGGCAAATGGGATGGTTTAGAGCCAAATCTGCCTGCTGTAGCCACTGGTTCTCACAT 591
Query 591 CGATGCTATTCCATATTCCGGGAAGTATGATGGTGTTGTCGGTGTTTTAGGTGCGATTGA 650
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 592 CGATGCTATTCCATATTCCGGGAAATATGATGGTGTTGTCGGTGTTTTAGGTGCGATTGA 651
Query 651 AGCTATCAATGTTTTGAAAAGGTCGGGGTTTAAACCGAAGAGATCTCTGGAGATAATCTT 710
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 652 AGCTATCAATGTTTTGAAAAGGTCGGGGTTTAAACCGAAGAGGTCTCTGGAGATAATCTT 711
Query 711 GTTTACATCTGAAGAACCGACCCGATTTGGGATCAGTTGTTTAGGAAGCCGCTTGCTTGC 770
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GTTCACATCTGAAGAACCGACCCGATTTGGGATCAGTTGTTTAGGAAGCCGCTTGCTTGC 771
Query 771 TGGAAGCAAAGAACTTGCAGAAGCACTAAAGACTACAGTTTTTGATGGCCAAAATGTGTC 830
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 772 TGGAAGCAAAGAACTTGCAGAAGCACTAAAGACTACAGTTGTTGATGGCCAAAATGTGTC 831
Query 831 CTTTATAGAAGCAGCTAGATCAGCTGGATACGCAGAAGATAAAGATGACGACTTATCGAG 890
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 832 TTTTATAGAAGCAGCTAGATCAGCAGGATACGCAGAAGACAAAGATGACGACTTATCGAG 891
Query 891 TGTGTTCTTGAAGAAAGGAAGTTACTTTGCTTTTATAGAGTTACATATCGAACAGGGACC 950
|||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||
Sbjct 892 TGTGTTCTTGAAGAAAGGAAGTTATTTTGCTTTTCTAGAGTTGCATATTGAACAGGGACC 951
Query 951 TATACTTGAAGACGAAGGTTTAGATATCGGTGTAGTAACCGCCATTGCTGCTCCAGCAAG 1010
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 952 TATACTTGAAGACGAAGGTTTAGATATCGGTGTTGTAACCGCCATTGCTGCTCCAGCAAG 1011
Query 1011 TTTGAAGGTGGAATTTGAAGGCAGTGGAGGTCATGCCGGTGCTGTGCTTATGCCATATAG 1070
||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 1012 TTTGAAGGTGGAATTTGAAGGCAATGGAGGTCATGCTGGTGCTGTACTTATGCCATATAG 1071
Query 1071 CAATGATGCCGGGCTTGCGGCTGCAGAGTTGGCTCTAGCTGTGGAAAAACATGTATTAGA 1130
||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1072 AAATGATGCCGGGCTTGCAGCTGCAGAGTTGGCTCTTGCCGTGGAGAAACATGTATTAGA 1131
Query 1131 GTCGGAGTCAATAGATACTGTAGGAACTGTTGGTATTCTGGAGCTACATCCTGGGGCAAT 1190
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GTCGGAGTCAATAGATACTGTTGGAACTGTTGGTATTCTGGAGCTACATCCTGGGGCAAT 1191
Query 1191 CAACAGCATCCCAAGCAAATCCCATCTTGAAATAGATACAAGGGATATTGATGAAGCGAG 1250
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1192 CAACAGCATTCCAAGCAAATCCCATCTTGAAATCGATACAAGGGATATCGATGAAGCGAG 1251
Query 1251 AAGAAACACCGTGATCAAGAAAATTCAGGAATCTGCTAACGCTATAGCTAAAAAACGAAA 1310
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1252 AAGAAACACCGTGATCAAGAAAATTCAGGAATCTGCTAACACGATAGCTAAAAAACGAAA 1311
Query 1311 AGTGAAGCTATCAGAATTCAAGATTGTAAATCAAGATCCTCCAGCACTCTCAGACAAACT 1370
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1312 AGTGAAGCTATCAGAATTCAAGATTGTAAATCAAGATCCACCAGCACTCTCTGACAAACT 1371
Query 1371 AGTAATCAAGAAAATGGCAGAGGCAGCGACAGAACTTAACTTATCACACAAGATGATGAT 1430
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1372 AGTAATCAAGAAAATGGCAGAGGCAGCCACAGAACTTAACTTATCACACAAGATGATGAT 1431
Query 1431 CAGCCGAGCTTATCATGATTCTCTATTCATGGCCAGGATATCTCCGATGGGTATGATATT 1490
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1432 CAGCCGAGCTTATCATGATTCTCTCTTCATGGCCAGGATATCTCCGATGGGTATGATATT 1491
Query 1491 CATCCCGTGCTACAAAGGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACAT 1550
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 CATTCCGTGCTACAAAGGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACAT 1551
Query 1551 GGCTAATGGAGTAAAAGTACTCTCCCTCGCTCTGGCTAAGCTCTCTTTAGACTGATGCAA 1610
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1552 GGCTAATGGAGTAAAAGTACTCTCCCTCACTCTGGCTAAGCTCTCTTTAGACTGATGCAA 1611
Query 1611 ACCCT-TTTCCTCACCCAGAAGCTTTACACATTCTCTACCTTTTCTTCAGTCTTTGTATC 1669
||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1612 ACCCTCTTTC-TCATCCAGAAGCTTTGCACATTCTCTACCTTTTCTTCAGTCTTTGTATC 1670
Query 1670 TTTGACAATGTAAAGAAAAATTCAATAAATGTTGTGGCTATCAAGTTAACAAGTTAACAG 1729
||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1671 TTTGACAATGTAAAGAAAA-TTCAATAAATGTTGTGGCTATCAC-TTATCAAGTTA-CAG 1727
Query 1730 TCACAGttttttttaaaaaaaCTGTTGTAATTATC 1764
|||||||||||||| |||| ||||||||||||||
Sbjct 1728 TCACAGTTTTTTTTTTAAAATCTGTTGTAATTATC 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5