BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494650
Length=2018
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43500.1 | Symbols: ATARP9, ARP9 | actin-related protein 9 |... 2817 0.0
> AT5G43500.1 | Symbols: ATARP9, ARP9 | actin-related protein 9
| chr5:17469675-17473591 FORWARD LENGTH=2187
Length=2187
Score = 2817 bits (1525), Expect = 0.0
Identities = 1733/1834 (94%), Gaps = 12/1834 (1%)
Strand=Plus/Plus
Query 146 CACCATTTTCATGGCAAACCCTAAA-CGCAATTCTTATCTCTCGTGGCAGGATTACTTGA 204
|||||||||||||||||| || ||| | ||||||| ||||||||||||||||||||||||
Sbjct 225 CACCATTTTCATGGCAAAACCAAAATC-CAATTCTCATCTCTCGTGGCAGGATTACTTGA 283
Query 205 AAACTGTTGCCCCGACTCAGATTTTGTCTGAGCGTGGAGCTAATCTCGTTGTCATCAACT 264
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 284 AAACTGTTGCCCCCACTCAGATTTTGTCTGAACGAGGAGCTAATCTCGTTGTCATCAACT 343
Query 265 TAGGGTCTGCTAATGTAAGAGTAGGATTGGCTATGGATGAGAAACCTTTCAATGTCCCTA 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 344 TAGGGTCTGCTAATGTAAGAGTAGGATTGGCTATGGATGAGAAACCTTTCAATGTTCCTA 403
Query 325 ATTGTATTGCTAGATACATGACACAAACTGGGAAACCAACTGTTGTTGATCAGATGCTTA 384
|||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 404 ATTGTATTGCAAGATACATTACACAATCTGGGAAACCAACTGTTGTTGATCAGATGCTTA 463
Query 385 ACACTCAGGTCACTACGAATCAACATGTTGACCGTGAGAGAGCTTATAATACTGCGGCAT 444
||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 464 ACACTGAGGTCACTACTAATCAACATGTTGACCGTGAGAGAGCTTATAATTCTGCGGCAT 523
Query 445 CGCTGTTGAAGATACCGTTTCTGGATGAAAGTTCTTCTTCTGGCTCTGCATCACGCAAGA 504
||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 524 CGCTGTTGAAGATACTGTTCCTGGATGAAAGTTCTTCTTCTGGCTCTGCATCTCGCAAGA 583
Query 505 TGGGGAGGATTGATGGATTCAATCAAGCGAGTACGACAAAGAAAGATGCAGTCTTTACTT 564
|||||||||| || |||| ||||||||||||||||| |||||||||| ||||||||||||
Sbjct 584 TGGGGAGGATCGACGGATACAATCAAGCGAGTACGATAAAGAAAGATTCAGTCTTTACTT 643
Query 565 GGACTGATGTGTATGAGGATGAGCATATTTCTCTTGCTTCATCAGCAGAAACTTCTGCTG 624
||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||| |||
Sbjct 644 GGACTGATGTGTATGAGGATGAGAAAATTTCTCTTGCCTCACCAGCAGAAACTTCTCCTG 703
Query 625 ATAAAGGTGAGGCCAGTGCATCT-ATTGCTGCTCCTGATGTTACTGACTCTAAAGACACT 683
|||||||||| || ||||||||| | |||| |||||||||||||||||||||||| |||
Sbjct 704 ATAAAGGTGATGCTAGTGCATCTGA-AGCTGTTCCTGATGTTACTGACTCTAAAGATACT 762
Query 684 AGTGAGAGTAAGCGCAAGTACAGGAAGACGATTTTTGGTAG-AGAAGCTTTGACGATATC 742
||||||||||| |||||||| ||||| | |||||||||| | ||||||||||| |||||
Sbjct 763 AGTGAGAGTAAACGCAAGTATAGGAAAATGATTTTTGGT-GAAGAAGCTTTGAAAATATC 821
Query 743 ACCAAACGAGCCATATTGTTTATACCATCCTATTCGGAGAGGTCACTTCAATGTTTCGCC 802
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GCCAAAAGAGCCATATTGTTTATACCATCCTATTCGGAGAGGTCACTTCAATGTTTCGCC 881
Query 803 ACATTATTCAGCGCAACGGGTTTTTGAGGACTTGACTGCTATCTTGGACTGGATTTTGTT 862
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 882 ACATTATTCAGCGCAACGGGTTTGTGAGGACTTAACTGCTATCTTGGACTGGATTTTATT 941
Query 863 AGAGAAACTTCATATAACTCAC-AGAGAGAGAAACTCGTTTCATGCTGTTATTGTTGTCC 921
|||||||||||||||||||||| || |||||| ||| ||||||||||||||||||||||
Sbjct 942 AGAGAAACTTCATATAACTCACAAG-GAGAGATTCTCTTTTCATGCTGTTATTGTTGTCC 1000
Query 922 CAGAAACATTTGACACCCGCGAAATAAAGGAAATGCTAACTATTGTGTTGGGAGAGCTAC 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 CAGAAACATTTGACACCCGCGAAATAAAGGAAATGCTAACTATTGTGTTGGGAGAGCTAT 1060
Query 982 ACTTTAACTCAGCAGTCGTCCACCAAGAAGGTCTATCCGCCGTTTTTGGGAATGGTTTGT 1041
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1061 ACTTTAACTCAGCAGTTGTCCACCAAGAAGGTCTATCGGCCGTTTTTGGGAATGGTTTGA 1120
Query 1042 CAACAGCTTGTATTGTGAATATAGGAGCCCAGACAAGTACAGTTGTTTGTGTCGAGGATG 1101
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1121 CAACAGCTTGTATTGTGAATATAGGAGCCCAGACAAGTACAGTAGTTTGTGTCGAGGATG 1180
Query 1102 GAGTCTCATTGCCAAATACTGAAAAGATTTTACCATTTGGAGGAGAGGACATATGTAGAT 1161
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1181 GGGTCTCATTGCCAAATACTGAAAAGATTTTACCTTTTGGAGGAGAGGATATATGTAGAT 1240
Query 1162 GCCTTCTATGGATTCAAAGGCATAACCAAAAGTGGCCACAAATCCACACAGATGTTTTGG 1221
|||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1241 GCCTTCTATGGATTCAGAGGCATTACCAAAAGTGGCCACAAATCAACACAGATGTTTTGG 1300
Query 1222 CAAAGCCAATCGATATGCTGATGCTTAATCAACTTAAGGAGTCATTTTGTGAAATTACAG 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1301 CAAAGCCAATCGATATGCTGATGCTTAATCAACTTAAGGAGTCATTTTGTGAAATTAGAG 1360
Query 1282 CAGGAGAACTTGAAACTGTTGCAACTGTTCATTCTTATGAAGATGGCATGCCAGCTGTGC 1341
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1361 CAGGAGAACTTGAAACTGTTGCAACGGTTCATTCTTATGAGGAAGGCATGCCAGCTGTGC 1420
Query 1342 CTCACAAGACAAATCTCACCTCACTTAACGTTCCACCAATGGGTCTGTTTTATCCTAACC 1401
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1421 CTCACAAGACAAATCTCACCTCCCTTAACGTTCCACCAATGGGTCTGTTTTATCCTAACC 1480
Query 1402 TTCTTG-TCCCTGAAGTGTTTCCCCAGCCACCACGTCAATGGTTCCAAGACCACGAGAAT 1460
|| ||| |||||||| | |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1481 TT-TTGGTCCCTGAAATATTTCCCCAGCCACCACGTCAATGGTTTCAAGACTACGAGAAT 1539
Query 1461 ATGCTGGAAGACACTTGGAACATGGACTTTGGAGGTGGTGGTAATATGGGATTACCAATG 1520
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1540 ATGTTGGAAGACACTTGGAACATGGACTTTGGAGGTGGTGGTAACATGGGATTACCAATG 1599
Query 1521 TGGGATAATTTTGCATTTTCCCCTTCAAAACCAAAGAAAGAAGAGAAGATTGGTCTCGCT 1580
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1600 TGGGATAGTTTTGCATTTTCGCCTTCAAAACCAAAGAAAGAAGAGAAGATTGGTCTCGCT 1659
Query 1581 GAAGCCATTACAAGCAGCATTTTCTCTGCTGGACGCATAGACCTTAGGCGAAAGCTTTTC 1640
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 1660 GAAGCCATTACAAGCAGCATTCTCTCTGCTGGACGCATAGACCTTAGACGGAAGCTTTTC 1719
Query 1641 TCCAGCATTCAACTGATTGGTGGTGCTGGTTTGACTAAAGGTCTTGTATCAGCTGTGGAA 1700
|||||||||||| |||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 1720 TCCAGCATTCAATTGATTGGTGGTGCTGGTTTGACGAAAGGTCTTGTAGCGGCAGTGGAA 1779
Query 1701 GAAAGAGTTCTTCACGCGATACCTCCAACCGAAGCCATTGACACTGTACAGGTTCTGCCA 1760
||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 1780 GAAAGAGTTCTTCACGCGATACCTCCAACTGAAGCCATTGATACAGTGCAGGTTCTGCCA 1839
Query 1761 TCAAGAACAGAGCCACCATTCGTAACTTGGAAAGGAGGAGCGATATTGGGAATTCTGGAC 1820
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 TCAAGAACGGAGCCACAATTCGTAACTTGGAAAGGAGGAGCGATATTGGGAATTCTGGAC 1899
Query 1821 TTTGGGAGGGAGGCTTGGATTGAGAGACCTCAATGGATGGAAAATGGGATTAATATAGGC 1880
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||
Sbjct 1900 TTTGGGAGGGAGGCTTGGATTGAGAGACATCAATGGATGGTAAATGGGGTTAATAAAGGT 1959
Query 1881 GGTCTAAAGAAGTACAAAGACTCTTATCACCTTCAAGGTCAAGCAATGTACTTCATCAAC 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 GGTCTAAAGAAGTACAAAGACTCTTATCACCTTCAAGGTCAAGCAATGTACTTCATCAAC 2019
Query 1941 CCCTAGTCTCT--CTATATCTTAAGCTTTCTCTG 1972
||||||| ||| |||||||||||||||||||||
Sbjct 2020 CCCTAGTTTCTGTCTATATCTTAAGCTTTCTCTG 2053
Score = 111 bits (60), Expect = 2e-23
Identities = 75/82 (91%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 2 AAGCGGAAAGCGGACCTCCGACGAAATTTTCAAG-CTTACGACGCGACGCCCGCGGATTA 60
||||||||||||||||||||||||||||| |||| || |||||| | ||| ||||| |||
Sbjct 50 AAGCGGAAAGCGGACCTCCGACGAAATTTCCAAGGCT-ACGACGGGCCGCGCGCGGGTTA 108
Query 61 TTTGGGCTTTCTCAGTTCAAAC 82
||||||||||||||||||||||
Sbjct 109 TTTGGGCTTTCTCAGTTCAAAC 130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99999485640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5