BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494654
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43430.1 | Symbols: ETFBETA | electron transfer flavoprotein... 1447 0.0
> AT5G43430.1 | Symbols: ETFBETA | electron transfer flavoprotein
beta | chr5:17453598-17455296 FORWARD LENGTH=999
Length=999
Score = 1447 bits (783), Expect = 0.0
Identities = 887/937 (95%), Gaps = 8/937 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATTCTCGTCGCCGTTAAACGTGTCGTCGACTACGCAGTCAAAATCCGTGTCAAA 60
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 59 ATGAAGATTCTCGTCGCCGTTAAACGTGTCGTCGACTACGCCGTCAAGATCCGAGTCAAA 118
Query 61 CCCGACAAGACTGGTGTAGAAACCCAAAATGTGAAGATGTCAATGAATCCATTTTGTGAG 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCCGATAAGACTGGTGTAGAAACCCAAAATGTGAAGATGTCAATGAATCCATTTTGTGAG 178
Query 121 ATCGCACTTGAGGAAGCTCTTCGAATCAAAGAAGCTGGTTTTGCTGAAGAGGTTATTGCT 180
||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 ATCGCGCTTGAGGAAGCGCTTCGAATCAAAGAAGCTGGTTTTGCTAAAGAGGTTATTGCA 238
Query 181 GTGAGTATTGGACCTTCACAATGTGTGGATACACTTCGTACTGGTTTAGCTATGGGTGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTGAGTATTGGACCTTCACAATGTGTGGATACACTTCGTACTGGTTTAGCTATGGGTGCT 298
Query 241 GATAGAGGAATTCATGTTGAGACCAATTCTAGTTTTCTTCCTTTGACGATTGCTAAGATC 300
||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 GATCGAGGAATCCATGTTGAGACCAATTCTATTTTTCTTCCTTTGACGATTGCTAAGATC 358
Query 301 TTGAAGAGTTTAGCTGAAGTTGAGAATCCTGGATTGATTTTCTTAGGGAAACAGGCGATA 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTGAAGAGTTTAGCTGATGTTGAGAATCCTGGATTGATTTTCTTAGGGAAACAGGCGATA 418
Query 361 GATGATGATTGCAATCAAACAGGACAAATGGTTGCAGCTTTGCTTGGTTGGCCACAAGCA 420
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 419 GATGATGATTGCAATCAAACAGGACAGATGGTTGCAGCTTTACTTGGTTGGCCACAAGCA 478
Query 421 ACCTTTGCATCGAAGGTTGTGTTGGATAAGGATAAGAATGTTGCAACTGTGGATAGAGAA 480
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 479 ACGTTTGCATCGAAGGTTGTGTTGGATAAAGATAAGAATGTTGCAACCGTGGATAGAGAA 538
Query 481 GTAGATGGAGGTCTTGAGACTCTTAATGTAGACTTACCCGCTGTGATAACAACGGATTTG 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 GTGGATGGAGGTCTTGAGACTCTTAATGTAGACTTACCCGCTGTGATAACAACTGATTTG 598
Query 541 AGGCTGAACCAACCAAGATATGCATCACTCCCTAACATAATGAAGGCTAAATCGAAGCCG 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 599 AGGCTGAACCAACCAAGATATGCATCACTCCCTAACATAATGAAGGCAAAATCAAAGCCT 658
Query 601 ATAAAGAAAATGACGGTGCAAGATCTGAAAGTAGACATTAAATCCGACATAGAGATCTTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATAAAGAAAATGACGGTGCAAGATCTGAAAGTAGACATTAAATCCGACATAGAGATCTTG 718
Query 661 GAAGTCACAGAGCCTCCAAAGAGGAAATCTGGCGTTATGGTTTCTTCAGTGGACGAGTTG 720
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 719 GAAGTCACGGAGCCTCCAAAGAGGAAATCTGGGGTTATGGTTTCTTCGGTGGATGAGTTG 778
Query 721 ATAGATAAGCTTAAAAATGAAGCTCATGTAGTTTGAAGGAAGAAACGTTTTATGTCtttt 780
|||||||| |||||||||||||||||||| |||||||||||||||| ||| |||||||
Sbjct 779 ATAGATAAACTTAAAAATGAAGCTCATGTTGTTTGAAGGAAGAAACATTT---GTCTTTT 835
Query 781 tttCCAATT-TGCTACACACTT-TGATCTTCTTATCTACGTTGCTGTTTCAGGCATAAAG 838
| ||| || |||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 836 TC-CCA-TTCTGCTACACACTTCTT-TCTTCTTATCTACGTTGCTGTTTCAGGCATCAAG 892
Query 839 TGGAAGTAAATAAAGAAATCAAGTGTGGATCTTGTTATTCAGTAATTCAATGTCTTCTCT 898
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 893 TGGAAGTAAATAAATAAATCAAGTGTGGATCTTGTTATTCAGTAATTCAATGTCTTCACT 952
Query 899 ACATAACATTCTTTCTTACTAATAAAATAATTCATGT 935
| || ||||||||||| ||| |||||| || ||||
Sbjct 953 GTAAAAAATTCTTTCTTATTAACAAAATAGTTGATGT 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5