BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494656 Length=1261 Score E Sequences producing significant alignments: (Bits) Value AT5G43420.1 | Symbols: | RING/U-box superfamily protein | chr5... 1781 0.0 > AT5G43420.1 | Symbols: | RING/U-box superfamily protein | chr5:17451669-17453124 FORWARD LENGTH=1456 Length=1456 Score = 1781 bits (964), Expect = 0.0 Identities = 1154/1241 (93%), Gaps = 31/1241 (2%) Strand=Plus/Plus Query 31 ATGGATCTATCAAACCGTCACAATCCTCTCCGGGATCTGAGCTTTCCACCGCCGCCGCCG 90 ||||||||||||||||||| ||||||||||||||||||||||||||| || || |||||| Sbjct 122 ATGGATCTATCAAACCGTCGCAATCCTCTCCGGGATCTGAGCTTTCCTCCTCCTCCGCCG 181 Query 91 CCACCTATCTTCCACAGTGCGAGCTCTACGGGGACGAGTTTTCCGATCTTAGCCGTCGCG 150 |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 CCACCTATTTTCCACCGTGCGAGCTCTACGGGGACGAGTTTTCCGATCTTAGCCGTCGCG 241 Query 151 GTGATCGGAATCTTAGCCACAGCATTCTTACTTGTAAGCTACTATGTTTTTGTTATCAAA 210 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 242 GTGATCGGAATCTTAGCCACAGCATTTTTACTTGTAAGCTATTATGTTTTTGTTATCAAA 301 Query 211 TGTTGTCTTAACTGGCACCGAATCGACATTCTTCATCGATTCTCGTTATCTCGAAGGCGA 270 |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 302 TGTTGTCTCAACTGGCACCGAATCGACATTCTTGGTCGATTCTCGTTATCTCGAAGGCGA 361 Query 271 CGCAACGACCAAGATCCTTTAATGGTTTACTCTCCAGAGCTCAGAAACCGTGGTCTTGAT 330 ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| Sbjct 362 CGCAACGACCAAGATCCTTTAATGGTTTACTCTCCAGAGCTTAGAAGCCGCGGTCTTGAT 421 Query 331 GAATCTGTCATTAGAGCAATCCCAATCTTTAAATTCAAGAAGAGAAATGACCAAAACGAC 390 ||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||||| Sbjct 422 GAATCCGTCATTAGAGCAATCCCAATCTTTAAGTTCAAGAAGAGATACGACCAAAACGAC 481 Query 391 GGCGTTTTTACAGGAG-A--AG--G-AGAAGAAGAGAAGAGTTCTCAAGAATGCTCTGTT 444 |||||||||||||||| | || | ||||||||||||||| |||||||||||||||||| Sbjct 482 GGCGTTTTTACAGGAGAAGGAGAAGAAGAAGAAGAGAAGAGATCTCAAGAATGCTCTGTT 541 Query 445 TGTTTGAGTGAGTTTCAAGATGAGGAGAAGCTGAGGATTATCCCAAATTGTTGTCATTTG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 542 TGTTTGAGTGAGTTTCAAGATGAGGAGAAGCTGAGGATTATCCCAAATTGTTCTCATTTG 601 Query 505 TTTCATATCGATTGTATCGATGTTTGGCTTCAGAACAATGCTAATTGCCCTTTGTGTAGA 564 ||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||||| Sbjct 602 TTTCATATCGACTGTATCGATGTGTGGCTTCAGAACAACGCCAATTGTCCTTTGTGTAGA 661 Query 565 GCTAGGGTTTCTTGTGACACAAGTTTCCCTCCTGATCGGGTTTCTGCGCCGAGCTCTTCT 624 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| Sbjct 662 ACTAGGGTTTCTTGTGACACAAGTTTTCCTCCGGATCGGGTTTCTGCGCCGAGCACTTCT 721 Query 625 CCAGAGAATCCGTTTGTGGGATCTGGTACCGTCGTGTTAAGAGGGGAGAACGAGTATGTG 684 || |||||| | | || || | |||||||||| ||||||||||||||| Sbjct 722 CCCGAGAAT-C-----T-GG-TC----A------TGTTAAGAGGTGAGAACGAGTATGTG 763 Query 685 GTCATTGAGCTGGGCAATAGCACCGGTAGTGACAGAGATAGTCCGAGA-AGCGGAAGGTT 743 |||||||||||||||| ||||| ||||||||||||||||||||| ||| | ||||||||| Sbjct 764 GTCATTGAGCTGGGCAGTAGCATCGGTAGTGACAGAGATAGTCCAAGACA-CGGAAGGTT 822 Query 744 ACTTATGGAACAAGAAAGGTCAAATTCAGGTCACCTACTCACCGAAAACACTCAGAATTC 803 ||||| || |||||||||||||||||||||| | ||||| | ||||||||| || ||||| Sbjct 823 ACTTACGGGACAAGAAAGGTCAAATTCAGGTTATCTACTGAACGAAAACACCCAAAATTC 882 Query 804 GATCAGTCCATCTCCGAAGAAGTTTGACCGCGGAGGGCTTCCAAGAAAATCCCGAAAGCT 863 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 883 GATCAGTCCATCTCCGAAGAAGCTTGACCGCGGAGGGCTTCCAAGAAAATTCCGAAAGCT 942 Query 864 TCACAAGATGACGAGTATGGGAGACGAATGCATCGACATAAGAAGAGGTATAGACGAACA 923 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 943 TCACAAGATGACGAGTATGGGAGACGAATGCATCGACATAAGAAGAGGTAAAGACGAACA 1002 Query 924 GTTCGGTAGTATTCAACCCATTAGAAGATCAATCTCAATGGATTCATCGGCGGATCGACA 983 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1003 GTTCGGTAGTATTCAGCCCATTAGAAGATCAATCTCAATGGATTCATCGGCGGATAGACA 1062 Query 984 GCTTTACCTGACGGTTCAAGAGGCGATTCGGAAAAACCGCGAAGTTCTGGTGGTTGGAGA 1043 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1063 GCTTTACTTGGCGGTTCAAGAGGCGATTCGGAAAAACCGCGAAGTTCTGGTGGTTGGAGA 1122 Query 1044 CGGAGGAGGATGTAGTAGTAGTAGTGGCAATGTTAGTAATTCCAAAGTGAAGAGATCTTT 1103 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1123 CGGAGGAGGATGTAGCAGTAGTAGTGGCAATGTTAGTAATTCCAAAGTGAAGAGATCTTT 1182 Query 1104 CTTCTCTTTTGGGAGCAGTAGACGTTCTAGAAGTTCCTCTATATTGCCCCTTTATTTTGA 1163 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 1183 CTTCTCTTTTGGGAGCAGTAGACGTTCTAGAAGTTCCTCTAAATTGCCACTTTATTTTGA 1242 Query 1164 ACCCTAATGGGCCGctttgcttctttgttttattttcttgtatc-tttctacatttgtat 1222 |||||||| |||||||||||| |||||||||||||||||| || |||||||||||| || Sbjct 1243 ACCCTAATAAGCCGCTTTGCTTATTTGTTTTATTTTCTTGT-TCCTTTCTACATTTG-AT 1300 Query 1223 tt-tattatttcatttttaa-tatttttgagatggattttt 1261 || |||||||||||||| || |||||||||||||||||||| Sbjct 1301 TTCTATTATTTCATTTTCAAATATTTTTGAGATGGATTTTT 1341 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61997673075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5