BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494656
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43420.1 | Symbols: | RING/U-box superfamily protein | chr5... 1781 0.0
> AT5G43420.1 | Symbols: | RING/U-box superfamily protein | chr5:17451669-17453124
FORWARD LENGTH=1456
Length=1456
Score = 1781 bits (964), Expect = 0.0
Identities = 1154/1241 (93%), Gaps = 31/1241 (2%)
Strand=Plus/Plus
Query 31 ATGGATCTATCAAACCGTCACAATCCTCTCCGGGATCTGAGCTTTCCACCGCCGCCGCCG 90
||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||
Sbjct 122 ATGGATCTATCAAACCGTCGCAATCCTCTCCGGGATCTGAGCTTTCCTCCTCCTCCGCCG 181
Query 91 CCACCTATCTTCCACAGTGCGAGCTCTACGGGGACGAGTTTTCCGATCTTAGCCGTCGCG 150
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CCACCTATTTTCCACCGTGCGAGCTCTACGGGGACGAGTTTTCCGATCTTAGCCGTCGCG 241
Query 151 GTGATCGGAATCTTAGCCACAGCATTCTTACTTGTAAGCTACTATGTTTTTGTTATCAAA 210
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 242 GTGATCGGAATCTTAGCCACAGCATTTTTACTTGTAAGCTATTATGTTTTTGTTATCAAA 301
Query 211 TGTTGTCTTAACTGGCACCGAATCGACATTCTTCATCGATTCTCGTTATCTCGAAGGCGA 270
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 302 TGTTGTCTCAACTGGCACCGAATCGACATTCTTGGTCGATTCTCGTTATCTCGAAGGCGA 361
Query 271 CGCAACGACCAAGATCCTTTAATGGTTTACTCTCCAGAGCTCAGAAACCGTGGTCTTGAT 330
||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 362 CGCAACGACCAAGATCCTTTAATGGTTTACTCTCCAGAGCTTAGAAGCCGCGGTCTTGAT 421
Query 331 GAATCTGTCATTAGAGCAATCCCAATCTTTAAATTCAAGAAGAGAAATGACCAAAACGAC 390
||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 422 GAATCCGTCATTAGAGCAATCCCAATCTTTAAGTTCAAGAAGAGATACGACCAAAACGAC 481
Query 391 GGCGTTTTTACAGGAG-A--AG--G-AGAAGAAGAGAAGAGTTCTCAAGAATGCTCTGTT 444
|||||||||||||||| | || | ||||||||||||||| ||||||||||||||||||
Sbjct 482 GGCGTTTTTACAGGAGAAGGAGAAGAAGAAGAAGAGAAGAGATCTCAAGAATGCTCTGTT 541
Query 445 TGTTTGAGTGAGTTTCAAGATGAGGAGAAGCTGAGGATTATCCCAAATTGTTGTCATTTG 504
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 542 TGTTTGAGTGAGTTTCAAGATGAGGAGAAGCTGAGGATTATCCCAAATTGTTCTCATTTG 601
Query 505 TTTCATATCGATTGTATCGATGTTTGGCTTCAGAACAATGCTAATTGCCCTTTGTGTAGA 564
||||||||||| ||||||||||| |||||||||||||| || ||||| ||||||||||||
Sbjct 602 TTTCATATCGACTGTATCGATGTGTGGCTTCAGAACAACGCCAATTGTCCTTTGTGTAGA 661
Query 565 GCTAGGGTTTCTTGTGACACAAGTTTCCCTCCTGATCGGGTTTCTGCGCCGAGCTCTTCT 624
||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 662 ACTAGGGTTTCTTGTGACACAAGTTTTCCTCCGGATCGGGTTTCTGCGCCGAGCACTTCT 721
Query 625 CCAGAGAATCCGTTTGTGGGATCTGGTACCGTCGTGTTAAGAGGGGAGAACGAGTATGTG 684
|| |||||| | | || || | |||||||||| |||||||||||||||
Sbjct 722 CCCGAGAAT-C-----T-GG-TC----A------TGTTAAGAGGTGAGAACGAGTATGTG 763
Query 685 GTCATTGAGCTGGGCAATAGCACCGGTAGTGACAGAGATAGTCCGAGA-AGCGGAAGGTT 743
|||||||||||||||| ||||| ||||||||||||||||||||| ||| | |||||||||
Sbjct 764 GTCATTGAGCTGGGCAGTAGCATCGGTAGTGACAGAGATAGTCCAAGACA-CGGAAGGTT 822
Query 744 ACTTATGGAACAAGAAAGGTCAAATTCAGGTCACCTACTCACCGAAAACACTCAGAATTC 803
||||| || |||||||||||||||||||||| | ||||| | ||||||||| || |||||
Sbjct 823 ACTTACGGGACAAGAAAGGTCAAATTCAGGTTATCTACTGAACGAAAACACCCAAAATTC 882
Query 804 GATCAGTCCATCTCCGAAGAAGTTTGACCGCGGAGGGCTTCCAAGAAAATCCCGAAAGCT 863
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 883 GATCAGTCCATCTCCGAAGAAGCTTGACCGCGGAGGGCTTCCAAGAAAATTCCGAAAGCT 942
Query 864 TCACAAGATGACGAGTATGGGAGACGAATGCATCGACATAAGAAGAGGTATAGACGAACA 923
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 943 TCACAAGATGACGAGTATGGGAGACGAATGCATCGACATAAGAAGAGGTAAAGACGAACA 1002
Query 924 GTTCGGTAGTATTCAACCCATTAGAAGATCAATCTCAATGGATTCATCGGCGGATCGACA 983
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1003 GTTCGGTAGTATTCAGCCCATTAGAAGATCAATCTCAATGGATTCATCGGCGGATAGACA 1062
Query 984 GCTTTACCTGACGGTTCAAGAGGCGATTCGGAAAAACCGCGAAGTTCTGGTGGTTGGAGA 1043
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GCTTTACTTGGCGGTTCAAGAGGCGATTCGGAAAAACCGCGAAGTTCTGGTGGTTGGAGA 1122
Query 1044 CGGAGGAGGATGTAGTAGTAGTAGTGGCAATGTTAGTAATTCCAAAGTGAAGAGATCTTT 1103
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 CGGAGGAGGATGTAGCAGTAGTAGTGGCAATGTTAGTAATTCCAAAGTGAAGAGATCTTT 1182
Query 1104 CTTCTCTTTTGGGAGCAGTAGACGTTCTAGAAGTTCCTCTATATTGCCCCTTTATTTTGA 1163
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1183 CTTCTCTTTTGGGAGCAGTAGACGTTCTAGAAGTTCCTCTAAATTGCCACTTTATTTTGA 1242
Query 1164 ACCCTAATGGGCCGctttgcttctttgttttattttcttgtatc-tttctacatttgtat 1222
|||||||| |||||||||||| |||||||||||||||||| || |||||||||||| ||
Sbjct 1243 ACCCTAATAAGCCGCTTTGCTTATTTGTTTTATTTTCTTGT-TCCTTTCTACATTTG-AT 1300
Query 1223 tt-tattatttcatttttaa-tatttttgagatggattttt 1261
|| |||||||||||||| || ||||||||||||||||||||
Sbjct 1301 TTCTATTATTTCATTTTCAAATATTTTTGAGATGGATTTTT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5