BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494661
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43380.1 | Symbols: TOPP6 | type one serine/threonine protei... 1940 0.0
> AT5G43380.1 | Symbols: TOPP6 | type one serine/threonine protein
phosphatase 6 | chr5:17420048-17421982 REVERSE LENGTH=1401
Length=1401
Score = 1940 bits (1050), Expect = 0.0
Identities = 1237/1327 (93%), Gaps = 13/1327 (1%)
Strand=Plus/Plus
Query 1 ACCATTCTTTTTCTCAAAGAGCAAGCATAAAAGAACATAAAAGAACCAAACTTTTTTAAT 60
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1 ACCATTCTTTTTCTCAAAGAGCAAGCATAAAAGAACATAAAAGCTCCATACTTTTTAAAT 60
Query 61 TTATTTCATATTGTCAATAGCTTCTGTTTAGTATAAATCTTCTAGGTCTCTTCTCGTTGT 120
||||| ||||||||||||||||| ||| || |||||| |||||||| | | | |||||
Sbjct 61 TTATTCCATATTGTCAATAGCTTTTGTATATTATAAAGCTTCTAGG---CGT-T-GTTGT 115
Query 121 TGTTTCGTCTCATTGTTGCTCTGTTTCTTGAGGTTTTATTAATGGATGCTAGTACTTTAA 180
||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 116 TGTTTTGTCTCATTGTTGCTCTGTTTCTTGAGGTTTTATAAATGGATCCTGGTACTTTAA 175
Query 181 ACTCGGTGATCAATAGGTTGCTTGAAGCTAGAGAGAAACCAGGAAAGATTGTTCAATTGT 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 176 ACTCGGTGATCAATAGGTTGCTTGAAGCTAGAGAAAAACCAGGAAAGATTGTTCAGTTGT 235
Query 241 CTGAAACAGAGATTAAACAGCTCTGTTTCGTCTCTAGAGGTATCTTCTTAAGACAGCCAA 300
||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 236 CTGAAACAGAGATCAAACAGCTCTGTTTCGTCTCTAGAGATATCTTCTTGAGACAACCAA 295
Query 301 ATCTCTTGGAACTCGAAGCTCCAGTCAAAATCTGTGGGGACATTCATGGACAATATCCGG 360
||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 296 ATCTCTTGGAACTTGAAGCTCCTGTTAAAATATGTGGGGACATTCATGGACAATATCCGG 355
Query 361 ATCTCTTGAGACTATTCGAATACGGCGGATACCCTCCTCGTTCAAACTACTTGTTTCTTG 420
|||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 356 ATCTCTTGAGACTATTCGAACATGGCGGATACCCTCCTAATTCAAACTACTTGTTTCTTG 415
Query 421 GAGATTATGTTGATCGCGGCAAGCAAAGCATTGAAACGATTTGTCTTTTACTCGCTTACA 480
|||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 416 GAGATTATGTCGATCGCGGCAAGCAAAGCCTCGAAACGATTTGTCTTTTACTTGCTTACA 475
Query 481 AGATCAAATTCCCTGAAAACTTCTTCCTTCTCAGAGGAAACCATGAAAGTGCCTCAATAA 540
|||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 476 AGATTAAGTTCCCTGAAAACTTCTTCCTTCTCAGAGGAAACCATGAAAGTGCATCAATCA 535
Query 541 ATCGCATTTACGGCTTCTATGACGAGTGTAAACGCAGATTCAGTGTCAAGATTTGGCGAA 600
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 536 ATCGTATTTACGGCTTCTATGACGAGTGTAAACGTAGATTCAGTGTCAAGATTTGGCGAA 595
Query 601 TCTTCACCGATTGCTTCAATTGTCTCCCCGTGGCTGCACTCATCGATGATCGGATTCTTT 660
||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| |||
Sbjct 596 TCTTCACTGATTGCTTCAACTGTCTCCCCGTCGCTGCACTCATCGATGAGCGGATTTTTT 655
Query 661 GTATGCATGGTGGGCTCTCCCCAGAGCTTCTTAGCTTGAGGCAGATTAGGGATATTCGTC 720
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 656 GTATGCATGGTGGGCTCTCCCCGGAGCTGCTAAGCTTGAGGCAGATTAGGGATATTCGTC 715
Query 721 GTCCAACAGATATTCCTGATCGTGGTTTACTCTGTGATCTCTTGTGGTCTGATCCTGATA 780
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTCCAACGGATATTCCTGATCGTGGTTTACTCTGTGATCTCTTGTGGTCTGATCCTGATA 775
Query 781 AAGATGTTAGAGGTTGGGGGCCTAACGATCGCGGAGTTTCTTACACTTTCGGATCGGATA 840
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 776 AAGATGTTAGAGGTTGGGGGCCTAACGATCGCGGAGTTTCTTACACTTTTGGATCAGATA 835
Query 841 CAGTTTCTGGGTTTCTCAAAAGACTTGATCTTGACCTAATTTGTAGGGCTCACCAGGTTG 900
||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 836 TAGTTTCTGGATTTCTTAAAAGACTCGATCTTGACCTCATTTGTAGGGCTCACCAGGTTG 895
Query 901 TTGAAGATGGATTCGAGTTCTTTGCGAATAAGCAGCTTGTGACGATATTTTCTGCGCCAA 960
||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |
Sbjct 896 TTGAAGATGGATTCGAGTTCTTTGCGAATAAGCAGCTCGTAACGATATTCTCTGCGCCGA 955
Query 961 ATTACTGTGGAGAATTCGACAATGCAGGTGCGATGATGAGTGTGGAC-GATGATTTGACC 1019
|||||||||| ||||| ||||||||||||||||||||||||||| | || |||||||||
Sbjct 956 ATTACTGTGGGGAATTTGACAATGCAGGTGCGATGATGAGTGTGT-CTGAGGATTTGACC 1014
Query 1020 TGCTCTTTTCAGATCTTAAAACCTAATGACAAGAAATCAAAGTTCAGTTTCGGAAGCAGA 1079
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGCTCTTTTCAGATCTTAAAATCTAATGACAAGAAATCAAAGTTCAGTTTCGGAAGCAGA 1074
Query 1080 GGTGGTGCTAAAACTAGCTTCCCTTATCCTAAAGTCAAGTCGATTCTGAGCTCGCAAAAT 1139
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1075 GGTGGTGCTAAAACTAGCTTCCCTTATCCTAAAGTGAAGTCGATTCTGAGTTCGCAAAAT 1134
Query 1140 TCGAAAGAATACAACTGATGAAGTTTTAAAACTTCGCATAATAACTGTTTAGAAACCATG 1199
||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||
Sbjct 1135 TCGAAAGAATACAACTGATGAAGATTTAAAACTCCGCATAATAACTATT-AGAAACCATG 1193
Query 1200 CCAACGTAACTCGACTA-TAT--GATGAGAAAGCAA-GATGAttttgaatttcggaattt 1255
||||||||||||||||| ||| ||||||||| || || ||||||||||||||||||||
Sbjct 1194 CCAACGTAACTCGACTACTATATGATGAGAAATTAAAGAGGATTTTGAATTTCGGAATTT 1253
Query 1256 tgggaagcttctgtttttgttttgtttttgtgttgtcttttgcttttacttgtgtgtatg 1315
||||||||||||||||||||| |||||| ||||||||| |||| | |||||||||||||
Sbjct 1254 TGGGAAGCTTCTGTTTTTGTTATGTTTT-GTGTTGTCTGCTGCTATCACTTGTGTGTATG 1312
Query 1316 ttttttt 1322
| |||||
Sbjct 1313 TGTTTTT 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68322941745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5