BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494671
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43320.1 | Symbols: ckl8 | casein kinase I-like 8 | chr5:173... 2643 0.0
AT1G04440.1 | Symbols: CKL13 | casein kinase like 13 | chr1:120... 1210 0.0
> AT5G43320.1 | Symbols: ckl8 | casein kinase I-like 8 | chr5:17385867-17389527
REVERSE LENGTH=2205
Length=2205
Score = 2643 bits (1431), Expect = 0.0
Identities = 1590/1664 (96%), Gaps = 21/1664 (1%)
Strand=Plus/Plus
Query 418 TTTTAAGAGATTGAAGAAAGGAGGAAACTTTTTGATTTGGAAACGATGGATCGTGTGGTT 477
||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 542 TTTTAAGAGATCGAAGAAAGGAGGAAGCTTTTTGATTTGGTAACGATGGATCGTGTGGTT 601
Query 478 GGTGGCAAGTATAAGCTTGGACGTAAACTTGGAAGTGGTTCATTTGGTGAACTTTTTCTA 537
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 602 GGTGGTAAGTATAAGCTTGGACGTAAACTTGGAAGTGGATCATTTGGTGAACTTTTTCTA 661
Query 538 GGGGTTAATGTACAAACTGGTGAAGAAGTAGCTGTGAAGCTTGAACCTGCGAGGGCTAGG 597
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 662 GGGGTTAATGTACAAACTGGAGAAGAAGTTGCTGTGAAGCTTGAACCTGCGAGAGCTAGA 721
Query 598 CATCCTCAACTTCATTATGAATCAAAGCTCTATATGCTTCTTCAAGGAGGAACTGGAATT 657
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 722 CATCCTCAACTTCATTATGAATCAAAGCTTTATATGCTTCTTCAAGGAGGAACTGGTATT 781
Query 658 CCTCATCTAAAATGGTATGGGGTAGAGGGTGAATTCAACTGTATGGTGATTGATCTTTTG 717
|| |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 782 CCACATCTAAAATGGTATGGGGTTGAGGGTGAATACAACTGTATGGTGATTGACCTTTTG 841
Query 718 GGTCCGAGCATGGAGGATTTATTTAATTATTGTAGTCGGAGGTTTAATCTAAAGACGGTT 777
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 842 GGTCCGAGTATGGAGGATTTATTTAATTATTGTAGTCGGAGGTTCAATCTAAAGACGGTT 901
Query 778 CTAATGCTCGCAGATCAGATGATAAATAGAGTTGAGTATATGCATGTCCGGGGATTTCTT 837
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 902 CTAATGCTCGCAGATCAAATGATCAATAGAGTTGAGTATATGCATGTCCGGGGATTTCTT 961
Query 838 CATCGTGACATAAAGCCAGATAACTTTTTGATGGGTCTTGGACGCAAAGCGAACCAGGTG 897
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CATCGTGACATAAAGCCTGATAACTTTTTGATGGGTCTTGGACGCAAAGCGAACCAGGTG 1021
Query 898 TACATCATTGACTACGGACTTGCAAAAAAGTATAGAGATCTTCAAACTCATAGGCACATT 957
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1022 TACATCATTGACTACGGACTTGCAAAAAAGTATAGAGATCTCCAAACTCATAGACACATT 1081
Query 958 CCCTACAGGGAAAACAAGAATCTTACTGGAACAGCCCGATATGCAAGTGTTAACACTCAT 1017
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1082 CCCTACAGGGAAAACAAGAATCTTACTGGAACAGCTCGATATGCAAGTGTTAACACTCAT 1141
Query 1018 CTTGGAATTGAGCAAAGTAGGAGGGACGATCTGGAATCTCTTGGCTACGTGCTTATGTAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CTTGGAATTGAGCAAAGTAGGAGGGACGATCTGGAATCTCTTGGCTACGTGCTTATGTAT 1201
Query 1078 TTTCTTCGAGGAAGTCTTCCTTGGCAAGGCCTTCGTGCGGGTACCAAAAAACAGAAGTAT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TTTCTTCGAGGAAGTCTTCCTTGGCAAGGCCTTCGTGCGGGTACCAAAAAACAGAAGTAT 1261
Query 1138 GACAAGATCAGCGAAAAGAAAAGGCTTACACCTGTAGAGGTTCTCTGTAAATCCTTTCCA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GACAAGATCAGCGAAAAGAAAAGGCTTACACCTGTAGAGGTTCTCTGTAAATCCTTTCCA 1321
Query 1198 CCTGAGTTCACATCATACTTCCTCTATGTACGATCATTGCGGTTCGAAGACAAACCAGAT 1257
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1322 CCTGAGTTCACATCATACTTCCTCTATGTACGATCATTGCGGTTTGAAGACAAACCAGAT 1381
Query 1258 TATCCATACCTAAAGAGGCTTTTCAGGGATCTCTTCATTCGAGAAGGTTATCAGTTTGAC 1317
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1382 TATCCATACCTAAAGAGGCTTTTCAGGGATCTCTTTATTCGAGAAGGTTATCAGTTTGAC 1441
Query 1318 TATGTATTTGATTGGACAATCTTGAAGTATCCACAGTTTAGTTCCGGCTCCAGCTCTAGC 1377
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1442 TATGTATTTGATTGGACAATCTTGAAGTATCCACAGTTTAGTTCGGGCTCCAGCTCTAGC 1501
Query 1378 TCCAAACCAAGATCAAGCCTGAGACCAGCTATGAATCCTCCAGTACCAACTGCGGAAAGA 1437
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1502 TCCAAGCCAAGATCAAGCCTGAGACCAGCTATGAATCCTCCAGTACCAATTGCCGAAAGA 1561
Query 1438 CCAGATAAACATTCAGCTGGCGCTGGGCAAGACAGTCGTGATAGATTCTCAGGTGCTTTA 1497
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1562 CCAGATAAACCTTCAGCTGGAGCTGGGCAAGACAGTCGAGATAGATTCTCAGGTGCTTTA 1621
Query 1498 GAGGCATATGCTAGAAGAAATGGCTCAGGAAGCGGTGTGGTTCAAGCTGATCGATCTAGA 1557
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1622 GAGGCATATGCTAGAAGAAATGGCTCAGGAAGCGGTGTGGTACAAGCTGATCGATCTAGA 1681
Query 1558 CCAAGAACCTCAGAGAATGTATTAGCATCATCAAAGGATACAACTCCACAAAACTATGAG 1617
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1682 CCAAGAACCTCAGAGAATGTATTAGCATCGTCAAAGGATACAACACCACAAAACTATGAG 1741
Query 1618 AGAGTCGAAAGACCAATCTCTTCAACAAGACACGCAAGTTCGTCAAGAAAAGCTGTTGTC 1677
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1742 AGAGTCGAAAGACCAATCTCTTCAACAAGACACGCAAGTTCTTCAAGAAAAGCTGTTGTA 1801
Query 1678 TCGAGCGTACGAGCCACTTCTTCAGCTGATTTCACAGAGAACCGCTCGAGCAGAGTTGTC 1737
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1802 TCGAGCGTACGAGCCACTTCTTCAGCTGATTTCACAGAGAACCGCTCTAGCAGAGTTGTC 1861
Query 1738 CCAAACAATGGCCGTTCCTCAACCGCTCAGAGGACTCAGCTTATCCCTGACCCAACCACT 1797
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1862 CCAAGCAATGGCCGTTCCTCAACCGCTCAGAGGACTCAGCTCGTCCCTGACCCAACCACT 1921
Query 1798 AGACCATCGTCTTCTTCTTTTGCCCGAGCTGCGCCGTCGAGGACTGCGCGTGACATCACG 1857
||||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1922 AGACCGTCATCTTCTTCTTTTACCCGAGCTGCGCCGTCGAGGACTGCTCGTGACATCACG 1981
Query 1858 CTCCAGAGCCTTGAGCTACTCACCATAGGGAATGGAAAGAGGAAGTGAGAAGCTTGG--- 1914
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1982 CTCCAGAGCTTTGAGCTACTCACCATAGGGAATGGAAAGAGGAAGTGAGAGGCTTGGCTT 2041
Query 1915 -A--G-GA---------A--AC--TACGACATTTTTATGGATGGATACTTTGTTTTTATT 1957
| | || | || | ||||||||| ||||||||| ||||||||||||||
Sbjct 2042 TATCGTGAGCGTGTTGGAGGACACTGCGACATTTTAATGGATGGAGACTTTGTTTTTATT 2101
Query 1958 TCACGAAATTATCGGTTTCCTAATTTAAGGAATAAATCGAACTTCATTTGATTACAATTT 2017
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2102 TCACGAAATTATCGGTTTCCTAATTTAAGGAATAAATCGAACATCATTTGATTACAAATT 2161
Query 2018 ATATGTGATAA-GTATATGGTTTTAACTTGTTAAGCTCTTCACT 2060
||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2162 ATATGTGATAAAGTATATGGTTTTAACTTGTTAAGCTCATCACT 2205
> AT1G04440.1 | Symbols: CKL13 | casein kinase like 13 | chr1:1202255-1205803
FORWARD LENGTH=2106
Length=2106
Score = 1210 bits (655), Expect = 0.0
Identities = 1119/1335 (84%), Gaps = 63/1335 (5%)
Strand=Plus/Plus
Query 463 ATGGATCGTGTGGTTGGTGGCAAGTAT-AAGCTTGGACGTAAA-CTTGGAAGTGGTTCAT 520
|||||||||||||||||||| |||| | ||||| ||||| ||| ||||||||||| ||||
Sbjct 561 ATGGATCGTGTGGTTGGTGGTAAGT-TCAAGCTCGGACG-AAAGCTTGGAAGTGGCTCAT 618
Query 521 TTGGTGAACTTTTTCTAGGGGTTAATGTACAAACTGGTGAAGAAGTAGCTGTGAAGCTTG 580
|||||||| |||| ||||| || |||||||||||||| |||||||| ||||| |||||||
Sbjct 619 TTGGTGAAATTTTCCTAGGAGTGAATGTACAAACTGGAGAAGAAGTGGCTGTTAAGCTTG 678
Query 581 AA-C-CTGCGAGGGCTAGGCATCCTCAACTTCATTATGAATCAAAGCTCTATATGCTTCT 638
|| | || ||| |||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 679 AACCTCTCCGA--GCTAGGCATCCTCAGCTTCATTACGAGTCAAAGCTTTATATGCTTCT 736
Query 639 TCAAGGAGGAACTGGAATTCCTCATCTAAAATGGTATGGGGTAGAGGGTGAATTCAACTG 698
|||||||||||||| |||||||| || ||||||| ||| || |||||||||||||||||
Sbjct 737 CCAAGGAGGAACTGGTATTCCTCACCTCAAATGGTTTGGTGTTGAGGGTGAATTCAACTG 796
Query 699 TATGGTGATTGATCTTTTGGGTCCGAGCATGG-AGGATTTATTTAATTATTGTAGTCGGA 757
||||||||| || ||| | ||||| || |||| || |||| || || ||||| |||| ||
Sbjct 797 TATGGTGATCGACCTTCTCGGTCCTAGTATGGAAGAATTT-TTCAACTATTGCAGTC-GA 854
Query 758 -GGTT-TAATCTAAAGACGGTTCTAATGCTCGCAGATCAGATGATAAATAGAGTTGAGTA 815
|| | ||| ||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 855 TCCTTCT-CTCTTAAGACAGTTCTAATGCTCGCAGATCAAATGATAAATAGAGTGGAGTA 913
Query 816 TATGCATGTCCGGGGATTTCTTCATCGTGACATAAAGCCAGATAACTTTTTGATGGGTCT 875
||||||||| || || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 914 TATGCATGTTAAAGGCTTCCTTCATCGTGATATTAAGCCAGATAACTTTTTGATGGGTCT 973
Query 876 TGGACGCAAAGCGAACCAGGTGTACATCATTGACTACGGACTTGCAAAAAAGTATAGAGA 935
|||||||||||| ||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct 974 TGGACGCAAAGCAAACCAGGTGTACATCATTGACTATGGGCTTGCCAAGAAGTATAGAGA 1033
Query 936 TCTTCAAACTCATAGGCACATTCCCTACAGGGAAAACAAGAATCTTACTGGAACAGCCCG 995
||||||||| || | ||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1034 TCTTCAAACACACAAGCATATTCCATACAGGGAAAACAAGAACCTTACTGGAACAGCTCG 1093
Query 996 ATATGCAAGTGTTAACACTCATCTTGGAATTGAGCAAAGTAGGAGGGACGATCTGGAATC 1055
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1094 ATATGCAAGTGTTAACACCCATCTTGGAATTGAGCAAAGTAGAAGGGATGATCTGGAATC 1153
Query 1056 TCTTGGCTA-CGTGCTTATGTATTTTCTTCGAGGAAGTCTTCCTTGGCAAGGCCTTCGTG 1114
||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1154 TCTAGGCTATC-TGCTTATGTATTTTCTTCGAGGAAGCCTTCCTTGGCAAGGCCTTCGTG 1212
Query 1115 CGGGTACCAAAAAACAGAAGTATGACAAGATCAGCGAAAAGAAAAGGCTTACACCTGTAG 1174
| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||| || |
Sbjct 1213 CAGGTACCAAAAAGCAGAAGTATGACAAGATCAGTGAAAAGAAAAGACTAACACCAGTGG 1272
Query 1175 AGGTTCTCTGTAAATCCTTTCCACCTGAGTTCACATCATACTTCCTCTATGTACGATCAT 1234
|||| ||||||||| ||||||||||||||||||||| || || |||||||| || |||
Sbjct 1273 AGGTCCTCTGTAAAAACTTTCCACCTGAGTTCACATCGTATTTTCTCTATGTGCGTTCAC 1332
Query 1235 TGCGGTTCGAAGACAAACCAGATTATCCATACCTAAAGAGGCTTTTCAGGGATCTCTTCA 1294
| ||||| |||||||||||||||||| |||||||||||||||||||||| || || || |
Sbjct 1333 TACGGTTTGAAGACAAACCAGATTATTCATACCTAAAGAGGCTTTTCAGAGACCTATTTA 1392
Query 1295 TTCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACAATCTTGAAGTATCCACAGT 1354
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1393 TCCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACAATATTGAGGTATCCACAGT 1452
Query 1355 TTAGTTCCGGCTCCAGCTCTAGCTCCAAACCAAGATCAAGCCTGA-GACCAGCTATGAAT 1413
| | ||| | |||||||| | |||||||||||| ||| | | | ||||||||||||||
Sbjct 1453 TCGGCTCCAGTTCCAGCTCGAATTCCAAACCAAGACCAA-CTTTAAGACCAGCTATGAAT 1511
Query 1414 CCTCCAGTACCAACTGCGGA-AAGACCAGATAAA-CATTCAGCTGGCGCTGGGCAAGACA 1471
|||||||||| |||| || || | | || ||| | | || | ||| || ||||
Sbjct 1512 ATTCCAGTACCATCTGCCGACAA-AGCGGA-AAAGCCTCCAA-T-----TGGACAGGACA 1563
Query 1472 GTCGTGATAGATTCTCAGGTGCTTTAGAGGCATATGCTAGAAGAAATGGCTCAGGAAGCG 1531
| ||||| || |||||||||| ||| |||||||| | ||||||||||||||||||| ||
Sbjct 1564 GCCGTGAGAGGTTCTCAGGTGTTTTCGAGGCATACACCAGAAGAAATGGCTCAGGAACCG 1623
Query 1532 GTGTGGTTCAAGCTGATC-GATCTAG-A--CCAAGAACCTCAGAGAATGTA-TTAGCATC 1586
| || | |||||||||| | ||||| | |||||||||||||||||||| || |||||
Sbjct 1624 GCGT--T-CAAGCTGATCAG-TCTAGTAGACCAAGAACCTCAGAGAATGTTCTT-GCATC 1678
Query 1587 ATCAAAGGATACAACTCCACAAAACTATGAGAGAGTCGAAAGACCAATCTCTTCAACAAG 1646
||| ||| || | | | ||| | | |||||| | ||| | ||| || | | ||
Sbjct 1679 --CAA-GGA--CA-CGC-A-AAACC-AGGAGAGAC-C-AAA--C---TCT-TT-ATCTAG 1720
Query 1647 -ACACGCA-AGTTCGTCAAGAAAAGCTGTTG-TC--TCGAGCGTACGAGCCACTTCTTCA 1701
| || | ||||||||||||||||| ||| | || || || ||||||||||| |||
Sbjct 1721 GA-AC-CTGAGTTCGTCAAGAAAAGCAATTGCTGGGTCAAGTGTTCGAGCCACTTCCTCA 1778
Query 1702 GCTGATTTCACAGAGAACCGCTCGAGCAGAGTTGTCCCAAACAATGGCCGTTCCTCAACC 1761
||||||||||||||||| || | |||||| | |||||||||||| || || || ||
Sbjct 1779 GCTGATTTCACAGAGAATCGATTAAGCAGACTCATCCCAAACAATGATCGGTCTTCTACA 1838
Query 1762 GCTCAGAGGACTCAG 1776
||| |||||| |||
Sbjct 1839 ACTCTGAGGACCCAG 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102107908530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5