BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494675
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43280.1 | Symbols: ATDCI1, DCI1 | delta(3,5),delta(2,4)-die... 1476 0.0
> AT5G43280.1 | Symbols: ATDCI1, DCI1 | delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1 | chr5:17367888-17369314 FORWARD LENGTH=1097
Length=1097
Score = 1476 bits (799), Expect = 0.0
Identities = 976/1059 (92%), Gaps = 22/1059 (2%)
Strand=Plus/Plus
Query 2 ATCATCATCACCACTGTATTTCAAATTATGACAATGGAGTCATACAAAACCCTAGAAATC 61
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 33 ATCATCATCATCACTGTATTTCAAACTATGACAATGGAGTCATACAAAACCCTAGAAATC 92
Query 62 GTTCGCAAGAACTCTGATTCCTCCGTATTTCACCTCATCATCAACAGACCATCACATCTC 121
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 93 ATTCGCAAGAACACTGATTCCTCCGTATTTCATCTCATCATCAACAGACCATCACATCTC 152
Query 122 AACGCCTTATCTCTCGATTTCTTCATCGAATTCCCCAAAGCTCTCTCATCTCTCGACCAA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 AACGCCTTATCTCTCGATTTCTTCATCGAATTCCCCAAAGCTCTCTCATCTCTCGACCAA 212
Query 182 AA-CCAAGATGTCTCCGTCATCATCCTCTCCGGCGCCGGAAAACACTTCTGCTCCGGCAT 240
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 213 AATCC-AGATGTCTCCGTCATCATCCTCTCCGGCGCCGGAAAACACTTCTGCTCCGGTAT 271
Query 241 CGATCTCACTTCCCTCTCTTCAATCTCAACACAATCCTCGTCCGGTAACGATAGAGGACG 300
|||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 272 CGATCTCAATTCCCTCTCTTCAATCTCGACACAATCCTCCTCCGGTAACGACAGAGGACG 331
Query 301 CTCAAGCGAGCAGCTCCGCCGTAAGATCAAGTCGATGCAAGCTGCGATTACGGCAATCGA 360
|| ||||||||||| |||||||||||||||||||||||||| |||||||| || || ||
Sbjct 332 ATCTAGCGAGCAGCTACGCCGTAAGATCAAGTCGATGCAAGCGGCGATTACAGCGATTGA 391
Query 361 ACAGTGCCGGAAACCTGTAATCGCCGCTATTCACGGCGCGTGTATCGGTGGAGGCGTTGA 420
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 392 ACAATGCCGGAAACCTGTAATCGCCGCTATTCACGGCGCGTGTATCGGTGGCGGTGTTGA 451
Query 421 TCTTG-TCACCGCTTGTGATGTTAGGTATTGCTCTGAGGATGCTTTTTTCTCGATCAAAG 479
|| || | |||||||||||| |||||||||||||||||||||| ||||||||||| ||||
Sbjct 452 TC-TGATTACCGCTTGTGATATTAGGTATTGCTCTGAGGATGCGTTTTTCTCGATTAAAG 510
Query 480 AGGTTGATCTAGCGATTGTTGCGGATCTTGGTACGCTTCAGAGATTACCGAGTATCGTTG 539
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 511 AGGTTGATCTAGCGATTGTTGCGGATCTTGGTACACTTCAGCGATTACCGAGTATCGTTG 570
Query 540 GGTATGCAAACGCCATGGAATTGGCTTTAACTGCTCGGAGATTCTCTGGTGGTGAAGCTA 599
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 571 GGTATGCTAACGCCATGGAATTGGCTTTAACTGCTCGGAGATTCTCTGGAAGTGAAGC-A 629
Query 600 AA-GAACTTGGTCTT-GTTTCTCGGGTTTTCGGATCTAAATCGGATCTTGATAACGGCGT 657
|| || |||||| || |||||| |||||||||||||||||||| |||||||| |||||
Sbjct 630 AAGGATCTTGGT-TTGGTTTCTAAAGTTTTCGGATCTAAATCGGAGCTTGATAATGGCGT 688
Query 658 CATTACGATCGCCGAAGGAATAGGAGGCAAGTCTCCTTTAGCTGTGACAGGGACAAAGGC 717
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CACTACAATCGCCGAAGGAATAGGAGGCAAGTCTCCTTTAGCTGTGACAGGGACAAAGGC 748
Query 718 AGTGTTATTAAGAAGCAGAGAGGTGAGTGTAGAACAAGGTCTTGACTATGTAGCGACTTG 777
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 749 AGTGTTATTAAGAAGCAGAGAGGTGAGTGTAGAACAAGGACTTGACTATGTAGCAACTTG 808
Query 778 GAACTCGGCTATGCTTATTTCAAACGATCTCAATGAAGCTGTCTCTGCTCAGTTGGTGAA 837
|||||||||||||||||| ||| | |||||||| |||||||| ||||||||| || ||||
Sbjct 809 GAACTCGGCTATGCTTATATCAGATGATCTCAACGAAGCTGTTTCTGCTCAGATGATGAA 868
Query 838 AAGAAAACCTCGGTTTGCTAAACTGTGATACTGTCTCT--GTTGCTTCTTGTTGTTCATT 895
|||||||||||||||||||||||| |||||| |||||| |||||||||| | | | ||
Sbjct 869 AAGAAAACCTCGGTTTGCTAAACTTTGATACAGTCTCTCTGTTGCTTCTT-TA-T-CTTT 925
Query 896 GACGATATTAAGCTCTTTTGGTAAC-AAAGTAATAAGATATTACTTCAAG-AAGTTTAGC 953
| | | | |||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 926 --C-A-A--A-GCTCTTCTGGTAACTAAAGTAATAAGATATTACTTCAAATAAGTTTAGT 978
Query 954 TATTGATAGTTTCCTAATTATGGATTAGGGCTATAGATAAAATGGTTTTCTTCACATGAG 1013
||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct 979 TATTGATAGTTCCCTAATTACGGATTAGGGCTATAGATAAAATGGTCTTCTACACATGAG 1038
Query 1014 AATATGATTAATACTCTGCATAGTGCGTGTTGGTAAATG 1052
|||||||||||||||||||| | ||| | ||||||||||
Sbjct 1039 AATATGATTAATACTCTGCACAATGCATATTGGTAAATG 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51590468969
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5