BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494684
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43190.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1929 0.0
> AT5G43190.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:17340138-17341569 REVERSE LENGTH=1432
Length=1432
Score = 1929 bits (1044), Expect = 0.0
Identities = 1163/1221 (95%), Gaps = 6/1221 (0%)
Strand=Plus/Plus
Query 1 CACCATGTTCCGCCTCAGAACTCACGGCAAA-AAACCCATTaccatcaccacaaccacca 59
|||||||||||| |||||| ||||||| ||| |||||||| ||||||||||| |||||||
Sbjct 55 CACCATGTTCCGTCTCAGAGCTCACGG-AAAGAAACCCATAACCATCACCACCACCACCA 113
Query 60 ccaccaccGCCTCCACTTTCCTCTACTGGTCACCCGAATCTTCCCCCACCACTCTATCAT 119
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 114 CCACCACCGCCTCCACTTTCCTCTACTGGTCACCAGAATCTTCCCCCACCGCTCTATCTT 173
Query 120 CTCCGACCAACATGGATCCATCCATCTGGTCTAACTTACCAAATCAcctcctcgaacaca 179
||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 174 CTCCGACCAACTTGGATCCAAACATCTGGTCTAACTTACCAAACCACCTCCTCGAACACA 233
Query 180 tcctctctctcctcccattcaaaactctcctcactctccggtcaatctcacgtcatctcc 239
|||||||| | || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 234 TCCTCTCTTTACTTCCTTTCAAAACTCTCCTCACTCTCCGATCAATCTCACGTCATCTCC 293
Query 240 gatctctaatcctctctccatctttcatttccgaccattctttctctcttccttc-tttc 298
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 294 GATCTCTAATCCTCTCTCCATCTTTCATCTCCGACCACTCTTTCTCTCTTCCTTCGTTT- 352
Query 299 ctcctcctctctcatcctcaatctttcaactccttccctctctttaaccctaatctcatc 358
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 353 CTTCTCCTCTCTCATCCTCAATCTTTTAACTCCTTCCCTCTCTTTAACCCTAATCTCATC 412
Query 359 tcctGGTGCACGTTAcctctccctcgttccctctcactaacttgcgcctcctctctcctc 418
|||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||
Sbjct 413 TCCTGGTGCACGTTACCTCTCCCTCGCTCCCTATCACTAACCTGCGCCTCTTCTCTTCTC 472
Query 419 tcttcttccaacggcctcctctgtttctccatctctccttcctctgtttcttctctctca 478
||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 473 TCTTCCTCCAACGGCCTCCTCTGTTTCTCCCTCTCACCTTCCTCTGTTTCTTCTCTTTCA 532
Query 479 atcttcAATCCCTTAACAAGATCCTCAAGATCTATCAAATTACCGTGTTACCCTTTTCCC 538
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 533 ATCTTCAATCCCTTAACAAGATCTTCAAGATCTATCAAATTACCTTGTTACCCTTTTCCC 592
Query 539 TTTGAGCTTCTCTCTCTTGTTACATCCCCTGACGGTTACAAAATCTTCACTCTTTGTTCA 598
|||||||||||||||||||| |||||||| | || ||||||||||||||||||||||||
Sbjct 593 TTTGAGCTTCTCTCTCTTGTGACATCCCCCAAAGGCTACAAAATCTTCACTCTTTGTTCA 652
Query 599 TCTTCCTCCGCCGCTTCTTCAAGATCCGTTTGTCTCTACGATTCCGGTGACCGCTCTTGG 658
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 653 TCGTCCTCCGCCGCTTCTTCAAGATCCGTTTGTCTCTACGATTCCGGTGACCGCTCATGG 712
Query 659 AGAAAATTCGGCGGCGTTGATCAAGTTTTACCTCGTGGGTTTAATCAAGATGGAGTCTTT 718
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 713 AGAAAATTCGGCGGCGTTGATCAAGTTTTACCTCGTGGGTTTAACCAAGATGGAGTCTTT 772
Query 719 TACAATGGGTCTCTCTATTTCGCTAGATCCGAGCCTTTTCTAATCGTGAGCGTTGATCTC 778
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TACAATGGGTCACTCTATTTCGCTAGATCCGAGCCTTTTCTAATCGTGAGCGTTGATCTC 832
Query 779 AACGACGGAAAATGGACAACAGCCACCGGAGACGGTGTTTTTCCGGCGGATAATGAGATC 838
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 833 AACGACGGAAAGTGGACAACAGCCACCGGAGACGGTGTTTTTCCGGCGGATGATGAGATC 892
Query 839 ACGTTTGCTAGATTAGTAAGTGATCCAGTA-AAGAAGATACTTTACATGGTTGGAGGAAT 897
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 893 ACGTTTGCTAGATTAGTAAGTGATCCAG-AGAAGAAGATACTTTACATGGTTGGAGGAAT 951
Query 898 TGGAAGCAATGGGATTTGTAGGAGTATCAAGATTTGGGAATTTAAAGAAGAAACAGAGAG 957
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TGGGAGCAATGGGATTTGTAGGAGTATCAAGATTTGGGAATTTAAAGAAGAAACAGAGAG 1011
Query 958 TTGGATCGAAGTAGAAACATTACCGGACATTGTTTGTAAGAAGTTTACTTCGGTGTGTTA 1017
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1012 TTGGATCGAAGTAGAAACATTACCGGACATTGTTTGTAGGAAGTTTACTTCGGTTTGTTA 1071
Query 1018 CCATAACTACGAGCATGTGTATTGTTTGTGGCATAAGGAGATGATTTGTGTGTGTTGTTA 1077
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1072 CCATAACTACGAGCATGTGTACTGTCTGTGGCATAAGGAGATGATTTGTGTGTGTTGTTA 1131
Query 1078 CAATTGGCCTGAGATTCTCTTTTTTCATGTTGGGAGAAGGACATGGCATTGGGTTCCTAA 1137
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1132 CAATTGGCCTGAGATTCTGTTTTTTCATGTTGGAAGAAGGACATGGCATTGGGTTCCTAA 1191
Query 1138 GTGTCCTTCGTTGCCGGAGAAATGGAGTTGTGGGTTTCGTTGGTTCTCTTTTGTCCCAAG 1197
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1192 ATGTCCTTCGTTGCCGGAGAAATGGAGTTGTGGGTTTCGGTGGTTCTCTTTTGTCCCAAG 1251
Query 1198 CTTGTGTGCTTCTGTTTAGTT 1218
||||| |||||||||||||||
Sbjct 1252 CTTGTCTGCTTCTGTTTAGTT 1272
Score = 150 bits (81), Expect = 3e-35
Identities = 98/106 (92%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 1219 AGTATTTGTTATTGTTTGTGTTCAAATCTCCAttttttttGTGTCTTCTATCAATGGTTT 1278
|||||||||||||||||| |||||||||| || |||||| | ||||||||||||| ||||
Sbjct 1317 AGTATTTGTTATTGTTTGCGTTCAAATCTTCA-TTTTTTGGGGTCTTCTATCAATTGTTT 1375
Query 1279 CGTTGGTATCTCTTTGTGAAATAAAAGATTGGTAATATTGGTTATT 1324
| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1376 CTTTGGTATCTCTTTGTGAAATAAAAGATTGGTAATATTGGGTATT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65160307410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5