BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494685 Length=365 Score E Sequences producing significant alignments: (Bits) Value AT1G30974.1 | Symbols: | Plant thionin family protein | chr1:1... 292 1e-78 AT1G30972.1 | Symbols: | Plant thionin family protein | chr1:1... 281 3e-75 > AT1G30974.1 | Symbols: | Plant thionin family protein | chr1:11046969-11047325 FORWARD LENGTH=357 Length=357 Score = 292 bits (158), Expect = 1e-78 Identities = 206/229 (90%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 1 AAAAAAGTTAAAGATATGGGTGCTAAATTGAATTTAATGATTTTAATAGTGTTTGTGGTG 60 |||||||||||||||||||||||||||| ||||| |||||| |||| |||||||||||| Sbjct 48 AAAAAAGTTAAAGATATGGGTGCTAAATGGAATTCAATGATCATAATGGTGTTTGTGGTG 107 Query 61 ACAATGGTAATAGCAATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCAAGAAGAT 120 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 108 ACAATGGTAATAGCAATGGAAAATGTCAATGGAGAGACGAGAGCTCAATGCCATGAAGAT 167 Query 121 TGCATT-CAAGGTTGTGCCACCACCGGAGCACTTCCGAGCAAGTGCCTCCAGAATTGTTA 179 |||||| || | |||||||||||| ||| | |||||| ||||||||| ||||||||||| Sbjct 168 TGCATTACA-GATTGTGCCACCACAGGAATAATTCCGATCAAGTGCCTTCAGAATTGTTA 226 Query 180 TCGTGGATG-CCGCGGCAAACCTGGTCGTGCATTAGGTAACCATTTTTC 227 ||| |||| || |||||||||| ||||| |||||||| |||||||||| Sbjct 227 CCGTCGATGTCC-CGGCAAACCTCGTCGTACATTAGGTCACCATTTTTC 274 > AT1G30972.1 | Symbols: | Plant thionin family protein | chr1:11044671-11045466 FORWARD LENGTH=796 Length=796 Score = 281 bits (152), Expect = 3e-75 Identities = 194/214 (91%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16 ATGGGTGCTAAATTGAATTTAATGATTTTAATAGTGTTTGTGGTGACAATGGTAATAGCA 75 ||||||||||||| ||||| ||||||| |||| |||||||||||||||||||| |||||| Sbjct 1 ATGGGTGCTAAATGGAATTCAATGATTATAATGGTGTTTGTGGTGACAATGGTTATAGCA 60 Query 76 ATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCAAGAAGATTGCATTCAAGGTTGT 135 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 61 ATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCATGAAGATTGCATTCTAGGTTGT 120 Query 136 GCCACCACCGGA-GCACTTCCGAGCAAGTGCCTCCAGAATTGTTATCGTGGATG-CCGCG 193 |||||||| ||| | | |||||| || |||||| ||||||||||| ||| |||| || || Sbjct 121 GCCACCACAGGAAGAA-TTCCGATCACGTGCCTTCAGAATTGTTACCGTCGATGTCC-CG 178 Query 194 GCAAACCTGGTCGTGCATTAGGTAACCATTTTTC 227 |||||||| ||||| ||||||||||||||||||| Sbjct 179 GCAAACCTCGTCGTACATTAGGTAACCATTTTTC 212 Score = 99.0 bits (53), Expect = 3e-20 Identities = 82/94 (87%), Gaps = 9/94 (10%) Strand=Plus/Plus Query 238 AGTGGAAGCGCAGACATAG-A-AGA-GAT--G--ATG--TCAGTGTTGGACTCTTGGGAC 288 |||||||||||||| |||| | ||| ||| | ||| ||||||||||||||||||||| Sbjct 628 AGTGGAAGCGCAGAAATAGAAGAGACGATGAGTCATGAATCAGTGTTGGACTCTTGGGAC 687 Query 289 TTTTAAACTAGCTTTTCTTCTACTTCTGTATCCT 322 ||||||||||||| ||||||||||| |||||||| Sbjct 688 TTTTAAACTAGCTCTTCTTCTACTTTTGTATCCT 721 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17141302409 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5