BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494685

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30974.1 | Symbols:  | Plant thionin family protein | chr1:1...   292    1e-78
  AT1G30972.1 | Symbols:  | Plant thionin family protein | chr1:1...   281    3e-75


> AT1G30974.1 | Symbols:  | Plant thionin family protein | chr1:11046969-11047325 
FORWARD LENGTH=357
Length=357

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 206/229 (90%), Gaps = 4/229 (2%)
 Strand=Plus/Plus

Query  1    AAAAAAGTTAAAGATATGGGTGCTAAATTGAATTTAATGATTTTAATAGTGTTTGTGGTG  60
            |||||||||||||||||||||||||||| ||||| ||||||  |||| ||||||||||||
Sbjct  48   AAAAAAGTTAAAGATATGGGTGCTAAATGGAATTCAATGATCATAATGGTGTTTGTGGTG  107

Query  61   ACAATGGTAATAGCAATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCAAGAAGAT  120
            |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct  108  ACAATGGTAATAGCAATGGAAAATGTCAATGGAGAGACGAGAGCTCAATGCCATGAAGAT  167

Query  121  TGCATT-CAAGGTTGTGCCACCACCGGAGCACTTCCGAGCAAGTGCCTCCAGAATTGTTA  179
            |||||| || | |||||||||||| |||  | |||||| ||||||||| |||||||||||
Sbjct  168  TGCATTACA-GATTGTGCCACCACAGGAATAATTCCGATCAAGTGCCTTCAGAATTGTTA  226

Query  180  TCGTGGATG-CCGCGGCAAACCTGGTCGTGCATTAGGTAACCATTTTTC  227
             ||| |||| || |||||||||| ||||| |||||||| ||||||||||
Sbjct  227  CCGTCGATGTCC-CGGCAAACCTCGTCGTACATTAGGTCACCATTTTTC  274


> AT1G30972.1 | Symbols:  | Plant thionin family protein | chr1:11044671-11045466 
FORWARD LENGTH=796
Length=796

 Score =  281 bits (152),  Expect = 3e-75
 Identities = 194/214 (91%), Gaps = 4/214 (2%)
 Strand=Plus/Plus

Query  16   ATGGGTGCTAAATTGAATTTAATGATTTTAATAGTGTTTGTGGTGACAATGGTAATAGCA  75
            ||||||||||||| ||||| ||||||| |||| |||||||||||||||||||| ||||||
Sbjct  1    ATGGGTGCTAAATGGAATTCAATGATTATAATGGTGTTTGTGGTGACAATGGTTATAGCA  60

Query  76   ATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCAAGAAGATTGCATTCAAGGTTGT  135
            |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct  61   ATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCATGAAGATTGCATTCTAGGTTGT  120

Query  136  GCCACCACCGGA-GCACTTCCGAGCAAGTGCCTCCAGAATTGTTATCGTGGATG-CCGCG  193
            |||||||| ||| | | |||||| || |||||| ||||||||||| ||| |||| || ||
Sbjct  121  GCCACCACAGGAAGAA-TTCCGATCACGTGCCTTCAGAATTGTTACCGTCGATGTCC-CG  178

Query  194  GCAAACCTGGTCGTGCATTAGGTAACCATTTTTC  227
            |||||||| ||||| |||||||||||||||||||
Sbjct  179  GCAAACCTCGTCGTACATTAGGTAACCATTTTTC  212


 Score = 99.0 bits (53),  Expect = 3e-20
 Identities = 82/94 (87%), Gaps = 9/94 (10%)
 Strand=Plus/Plus

Query  238  AGTGGAAGCGCAGACATAG-A-AGA-GAT--G--ATG--TCAGTGTTGGACTCTTGGGAC  288
            |||||||||||||| |||| | ||| |||  |  |||  |||||||||||||||||||||
Sbjct  628  AGTGGAAGCGCAGAAATAGAAGAGACGATGAGTCATGAATCAGTGTTGGACTCTTGGGAC  687

Query  289  TTTTAAACTAGCTTTTCTTCTACTTCTGTATCCT  322
            ||||||||||||| ||||||||||| ||||||||
Sbjct  688  TTTTAAACTAGCTCTTCTTCTACTTTTGTATCCT  721



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17141302409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5