BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494686
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43180.1 | Symbols: | Protein of unknown function, DUF599 |... 1251 0.0
> AT5G43180.1 | Symbols: | Protein of unknown function, DUF599
| chr5:17336330-17337872 REVERSE LENGTH=871
Length=871
Score = 1251 bits (677), Expect = 0.0
Identities = 760/801 (95%), Gaps = 2/801 (0%)
Strand=Plus/Plus
Query 12 AGAGAGGAGAAAATGAGAATGAAGGTGGACACAGACAGTATTGTAGTGCCATTGAGTTTG 71
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 45 AGAGAGGAGAAAATGAGAATGAAGATCGACACAGACAGCATTGTAGTGCCATTGAGTTTG 104
Query 72 TTGATAGCAGTGGGATACCATGTCTTTCTATGGAACACCTTCAAGCACAACCCTTCTCGT 131
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 105 TTGATAGCTGTGGGATACCATGTCTTTCTATGGAACACCTTCAAGCACAATCCTTCTCGT 164
Query 132 ACTTCCCTTGGCATTGATTCCTCCAAACGCAAAGCTTGGTTCCGCGACATCAAAGAGGGT 191
||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 165 ACTTCACTTGGCATTGATTCCTCAAAACGCAAATCTTGGTTCCGTGACATCAAAGAGGGT 224
Query 192 GACGATAAGACTGGGATGTTAGCAGTACAAAGCTTGAGGAACaaaaaaaTGGTGACAATT 251
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 225 GACGATAAGACTGGGATGTTGGCCGTACAAAGCTTGAGGAACAAAAAAATGGTGACAATT 284
Query 252 CTCACCGCTACAATAGCCATCCTTATCTTCCTTTCACTAGCTGCGGTAACTAACAACGCG 311
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 285 CTAACCGCTACAATCGCCATCCTTATCTTCCTTTCTCTAGCTGCGGTAACTAACAACGCA 344
Query 312 TTTAAAGCGAGTCATCTTATCACCGCAGCTGATGACATCTTATTTGGCTCACAAAACGCT 371
|||||||| |||||||| ||||| || |||||||||||||| |||||||||||||| |||
Sbjct 345 TTTAAAGCCAGTCATCTCATCACTGCCGCTGATGACATCTTCTTTGGCTCACAAAATGCT 404
Query 372 AAAATCTTTGTCCTAAAATATGCCTCTGCCTCGTTGCTTCTTGCAGCAAGCTTCTTCTTT 431
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 405 AAAATCTTTGTCCTAAAATATGCCTCAGCCTCGTTACTTCTTGCAGCAAGCTTCTTCTTT 464
Query 432 AGCTCAATTGCCTTAAGTTATTTGATGGATGCAATTTTCCTTATCAACGCGAT-GTCTAA 490
|||||||||||||| |||||||| |||||||||||||||||||||||||| || | ||||
Sbjct 465 AGCTCAATTGCCTTGAGTTATTTAATGGATGCAATTTTCCTTATCAACGCAATAG-CTAA 523
Query 491 GAAGCAGGAAGGAGACTGTGACTGCGGTTACGATATCACGGGGACAACTTCGTTTAGGGA 550
||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 524 AAAGCATGAAGGAGACTGTGACTGCGCTTATGATATCACGGGGACAAGTTCGTTTAGGGA 583
Query 551 GTATACAAGATTGGTATTGGAGAGAGGGTTTTTTATGGCTATGGTTGGGAACAGAGTTAT 610
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GTATACAAGATTGGTGTTGGAGAGAGGGTTTTTTATGGCTATGGTTGGGAACAGAGTTAT 643
Query 611 GTGTGTTTCAATACCGTTGTTGCTTTGGATGTTTGGACCGTTACCGGTGCTAGCATCTTC 670
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 644 GTGTGTTTCTATACCGTTGTTGCTTTGGATGTTTGGACCGTTACCGGTGCTCGCATCTTC 703
Query 671 ATTAGGCCTTGTTTGGGTGTTGTATCAGTTTGATTTTCCGTCAACCGCTAAAATTTCTGT 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATTAGGCCTTGTTTGGGTGTTGTATCAGTTTGATTTTCCGTCAACCGCTAAAATTTCTGT 763
Query 731 ATGTAAAACATAGAGAGAGATATATTGAAAATAACAGTTTGATTATTGTTTTCAATCATT 790
||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||
Sbjct 764 TTGTAAAACATAGAGAGAGAGATATTGAAAATAACAGGTTGATTATTGTTTTCATTCATT 823
Query 791 ATATATAATAATGAATGGAAA 811
||||||||||| |||||||||
Sbjct 824 ATATATAATAACGAATGGAAA 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5