BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494689
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43160.1 | Symbols: QWRF9 | Family of unknown function (DUF5... 1026 0.0
> AT5G43160.1 | Symbols: QWRF9 | Family of unknown function (DUF566)
| chr5:17329275-17331352 FORWARD LENGTH=1132
Length=1132
Score = 1026 bits (555), Expect = 0.0
Identities = 667/721 (93%), Gaps = 8/721 (1%)
Strand=Plus/Plus
Query 856 GGAACCAGCATTGTTAGAGGAATAAGCCCTTCGA-A-ATGCGTTGTTCCTCCAAGAGGGG 913
||||| ||||||| |||||| |||||||||||| | | | |||||||||||||||||||
Sbjct 28 GGAACTAGCATTGCTAGAGGTTTAAGCCCTTCGAGAGA-G-GTTGTTCCTCCAAGAGGGG 85
Query 914 TTACTCCATCAGGCAGAATGAGTCCACTAAGAGTGAGAAGCTCGA-TGAGTAAAAATACG 972
||| ||| |||| ||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct 86 TTAGTCCTTCAGATAGAATGAGTCCACTAAGAGTGAGAAGCTC-ACTGAGTAAAAACACG 144
Query 973 CCTTTGATTCCGAATTTTGCTGTGGATGCTAAAGAGAAGATCAGAGATAATGGAGTTGCT 1032
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 145 CCTTTGATTCCGCATTTTGCTGTGGATGGTAAAGAGAAGATCAGAGATAATGGGGTTGCT 204
Query 1033 GATGCTCACTTGTTAAAGCTATTACACAATAGATTGCTCCAATGGCAATTTGCTAATGCA 1092
|||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 205 GATGCTCACTTGTTAAGGCTATTACACAGTAGGTTGCTGCAATGGCAATTTGCTAATGCA 264
Query 1093 CGAGCAAATGTTGTTATCTCTGCACAAAAGATGAGAGCGGAGAAAAGACTGTGCAATGCA 1152
|||||||||| |||||||||| ||||||||||||||| ||||| |||||||| |||||||
Sbjct 265 CGAGCAAATGCTGTTATCTCTTCACAAAAGATGAGAGAGGAGAGAAGACTGTACAATGCA 324
Query 1153 TGGATAAGTATCTCTAAGCTATATGATTCTGTCAG-AGCGAAAAGAATCGAATTGCAGCA 1211
|||| |||||||||||| || ||| |||||||||| | ||||||||| ||| |||||||
Sbjct 325 TGGAGAAGTATCTCTAATCTGTATAATTCTGTCAGCA-TGAAAAGAATTGAAATGCAGCA 383
Query 1212 CCTGAAGCAGAATTTGAAACTGATATCTATTCTCAATAGGCAGATGGGACATCTAGAAGA 1271
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 384 CCTGAAGCAGAATTTGAAACTGATATCTATCCTCAATATGCAGATGGGACATCTAGAAGA 443
Query 1272 GTGGTTGGTTATGGACCGGGATTATATGGGTTCTTTAGTAGGAGCTGCTGAAGCGCTAAA 1331
|||||||||||| || ||| |||||||||||||||| ||||||||||||||||| | ||
Sbjct 444 GTGGTTGGTTATTGATCGGAATTATATGGGTTCTTTGGTAGGAGCTGCTGAAGCTTTGAA 503
Query 1332 AGGCAGCACACTTTGTCTACCTGTTGATTGCGGGGCAATGGTAAATGTACAAAGTGTTAA 1391
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 AGGCAGCACCCTTTGTCTACCTGTTGATTGCGGGGCAATGGTAAATGTACAAAGTGTTAA 563
Query 1392 GGATGCCATTTGTTCAGCAGTTGATGTTATGCAAGCAATGGCATCTTCCATATGCTTGTT 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GGATGCCATTTGTTCAGCAGTTGATGTTATGCAAGCAATGGCATCTTCCATATGCTTGTT 623
Query 1452 GCTGCCAAAGGTTGGGAAAATAAGTAGCTTGGCAACAGAACTTGGCCGTGTGGATATCAA 1511
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 624 GCTGCCAAAGGTTGGGAAAATAAGTAGCTTGGCAGCAGAACTTGGCCGTGTGAATGCCAA 683
Query 1512 GGAGGAAGGGATGCTCGACATGTGCCGAGACCTCCTAAACACAATCTCAGCTCTGCAGGT 1571
||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 684 GGACGAAGGGATGCTCGACGTGTGCCGGGACCTTCTAAACACAATCTCAGCTCTGCAGGT 743
Query 1572 A 1572
|
Sbjct 744 A 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81525685080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5