BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494697

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43070.1 | Symbols: WPP1 | WPP domain protein 1 | chr5:17289...   604    2e-172


> AT5G43070.1 | Symbols: WPP1 | WPP domain protein 1 | chr5:17289100-17289776 
REVERSE LENGTH=677
Length=677

 Score =  604 bits (327),  Expect = 2e-172
 Identities = 438/489 (90%), Gaps = 18/489 (4%)
 Strand=Plus/Plus

Query  66   caccaccacATCTCCTA-CGGCGATCTCAGAAACCGAAACCTCCACCACATTACCAACAA  124
            ||||||| | ||||| | || |||||||||||||||||| ||||||||||||||||||||
Sbjct  77   CACCACCTCTTCTCC-ACCGCCGATCTCAGAAACCGAAAACTCCACCACATTACCAACAA  135

Query  125  TGGAGACGGAGAAGAATCCAAATCCAGTAACCATTTCGCTCCGAATCTGGCCACCGACTC  184
             |||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||
Sbjct  136  CGGAGACGGAGAAGAATCCCAATCCGGTAACCATTTCCCTCAGAATCTGGCCACCGACTC  195

Query  185  AAAAAACTCGCGACGCCGTCATTAACCGTCTGATCGAAACACTATCAACCGAATCAATCC  244
            ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct  196  AAAAAACTCGCGACGCCGTGATTAACCGTCTGATCGAAACACTGTCAACCGAATCAATCC  255

Query  245  TCTCTAAGAGATTCGGAACTCTCGATTCCGAAGAAGCTTCCTCCGTCGCGAAATCAATCG  304
            |||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct  256  TCTCCAAGAGATTCGGATCTCTTGAATCCGAAGAAGCTTCCTCCGTCGCGAAATCAATCG  315

Query  305  AAGACGAAGCTTACGCCGTCGCTTCCGCCGCCGTTGTT-AGTGATGACGACGGGATCGAG  363
            ||||||||||||||||| ||||||| ||| ||| | ||  ||||||||||||||||||||
Sbjct  316  AAGACGAAGCTTACGCCATCGCTTCTGCCACCG-TATTCGGTGATGACGACGGGATCGAG  374

Query  364  ATTCTTAAAGCTTATTCTAAAGAGATTAGTAAACGTATGCTTGAATCTGTGAAAGCTAAG  423
            |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  375  ATTCTTAAAGCTTATTCTAAAGAGATTAGTAAACGTATGCTTGAATCTGTTAAGGCTAAG  434

Query  424  ACTAATGTGGCTTCTCCTCCACCAAAGGATGGTGATGGAACTCCAGATTCAAGA-GAAGA  482
            | ||||||||||||||||||||| |||||||||||||||| |  | || || |  |  ||
Sbjct  435  AGTAATGTGGCTTCTCCTCCACCGAAGGATGGTGATGGAATTG-A-AT-CA-GCTGTTGA  490

Query  483  TGTTAAAGGCGAT-GATGCGAA-TCCAAAGCTTGACGAGGCTTGAATATGGTGTTGTTCT  540
            | |  |||   || ||| | || |  || |||||||||||||||||||||||||||||||
Sbjct  491  T-TCGAAG---ATTGATTC-AAGTG-AA-GCTTGACGAGGCTTGAATATGGTGTTGTTCT  543

Query  541  CTTATCTCT  549
            |||||||||
Sbjct  544  CTTATCTCT  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5