BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494701 Length=2080 Score E Sequences producing significant alignments: (Bits) Value AT5G43020.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3205 0.0 > AT5G43020.1 | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:17255291-17257742 REVERSE LENGTH=2145 Length=2145 Score = 3205 bits (1735), Expect = 0.0 Identities = 1974/2089 (94%), Gaps = 17/2089 (1%) Strand=Plus/Plus Query 1 ATGCTTCTTCGTTGTAACTTACCCATttctgggtttcttctcttctgcttcttcttcacc 60 ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 1 ATGCTTCTTCGATGTAACTTACCCATTTCTGGGTTTCTTCTCTTCTGTTTCCTCTTTACC 60 Query 61 attgttgcttcttcttcttcttccttAAACCGCACTAAA-CACGTGTTTCATTAC-CACC 118 ||||||||||||||||||||||||| |||| ||| ||| | ||||||||||| | |||| Sbjct 61 ATTGTTGCTTCTTCTTCTTCTTCCTCCAACCACAC-AAAGCGCGTGTTTCATT-CTCACC 118 Query 119 GTGACGTTTCTGCTTTGTTACGTTTCAAATCCAAAGCTGATTTATGGAACAAGATTAACA 178 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 119 GTGACGTTTCTGCTTTGTTACGTTTTAAATCCAAAGCTGATTTATGGAACAAGATAAACA 178 Query 179 CGAGCTCTCACTTTTGTCAATGGTGGGGTGTTACGTGTTATGGAAACAGAGTTGTTCGTT 238 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CGAGCTCTCATTTTTGTCAATGGTGGGGTGTTACGTGTTATGGAAACAGAGTTGTTCGTT 238 Query 239 TGGTTATTGAAGATCTTTATCTCGGAGGTCGACTCGTTCCTGACTCAGTTAATAAACTCG 298 |||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| Sbjct 239 TGGTTATTGAAGATCTTTATCTTGGAGGGCGACTCATTCCTGACTCAGTTAATAAACTCG 298 Query 299 ACCAGCTTCGAGTTCTCAGTCTCAAAAACACTTCCTTAACCGGACC-TATACCAGATTTC 357 |||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||| Sbjct 299 ACCAGCTTCGAGTTCTGAGTCTCAAGAACACTTCCTTAACCGGACCGT-TACCAGATTTC 357 Query 358 TCCGGTTTGGTTAATCTCAAATCGTTATTTCTCGATCACAACTCTTTTTCCGGTTCGTTT 417 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 358 TCCGGTTTGGTTAATCTCAAATCATTATTCCTCGATCACAACTCTTTTTCCGGTTCGTTT 417 Query 418 CCTCTCTCGGTTCTCGCGCTTCACCGGTTAAGAACTCTTGATTTCTCCTTTAACAACCTC 477 ||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||| Sbjct 418 CCTCTCTCGGTTCTCGCTTTTCACCGGTTAAGAACTCTCGATTTCTCCTTCAATAACCTC 477 Query 478 ACCGGTCCAATCCC-TCCCGGTTTAGTTCTCTCCGACCGGTTGATTTATCTCCGTCTCGA 536 |||||||||||||| | ||||||||||||||||||||||||||||||||||||| || || Sbjct 478 ACCGGTCCAATCCCAT-CCGGTTTAGTTCTCTCCGACCGGTTGATTTATCTCCGACTTGA 536 Query 537 TTCGAACCGGTTTAACGGTCCCGTCCCTG-CTCTAAACCAATCCTCGCTTCATACATTCA 595 |||||| ||||| |||||||||||||| | || ||||||||||| ||||||||||||||| Sbjct 537 TTCGAATCGGTTCAACGGTCCCGTCCC-GCCTTTAAACCAATCCACGCTTCATACATTCA 595 Query 596 ATGCTTCGGTTAACAACTTAACCGGTGCTGTACCGGTAACAACAGTTCTGTTACGATTCG 655 ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 596 ATGTTTCGGTTAACAACTTAACCGGTGCTGTACCGGTGACAACCGTTCTGTTACGATTCG 655 Query 656 GTATTTCTTCATTTCTCAAAAACCCTAATCTCTGCGGCGAGATCGTTCACAAAGAATGCA 715 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 656 GTATTTCTTCATTTCTCAAAAACCCTAATCTCTGCGGTGAGATTGTTCACAAAGAATGCA 715 Query 716 ATCCAAGACCCAAATTCTTCACTCCGGTAACGGCGGCGCCGCCACCGAAGATGGTTCTCG 775 |||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 716 ATCCGAGAGCCAAATTCTTCACTCCGGTAACGGCGGCGCCGTCACCGAAGATGGTTCTCG 775 Query 776 GTCAAATCGCGCAAATCGAAGGAGCAAGATTATCCCGGCCAAATCAAAACAAACATTCAC 835 ||||||| |||||||| | || ||||||||||||||||||| ||||||||||||||||| Sbjct 776 GTCAAATAGCGCAAATAGGCGGCGCAAGATTATCCCGGCCAAGTCAAAACAAACATTCAC 835 Query 836 GGTTCTTTGTGATTCTCGGTTTTATCTCCGGCGCTTTTATCCTATTCATCTCCGTCGCGT 895 | || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 836 GATTTTTTGTGATTCTCGGTTTTATCTCCGGCGCTTTTATCCTCTTCATCTCCGTCGCGT 895 Query 896 GCCTAATCGGCGCAGTGAAGAGACGAAGAAGCAAAAACAAGAAACAAAAGGGGAAAGAAT 955 |||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 896 GCCTTATCGGCGCAGTGAAGAGACGAAGAAGCAAAACCGAGAAACAAAAGGGGAAAGAAT 955 Query 956 CAACTGCAGTAGTCACATTCGACGCGGCGGAGACGGCGGAAGTAGCGGCGGCGATAGAAC 1015 |||| || || || ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 956 CAACGGCGGTTGTGACATTTGACGCGGCGGAGACGGCGGAAGTAGCGGCGGCGATAGAAC 1015 Query 1016 AAGAGAGTGAGATAGAAGAGAAAGTGAAGAAGCTACAAGCGACAAAAAGTGGGAGTTTAG 1075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 AAGAGAGTGAGATAGAAGAGAAAGTGAAGAAGCTACAAGCGACAAAAAGTGGGAGTTTAG 1075 Query 1076 TATTCTGTGCGGGTGAGGCACACGTTTATACGATGGACCAACTAATGACAGCATCAGCTG 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 TATTCTGTGCGGGTGAGGCACACGTTTATACGATGGACCAACTAATGACAGCATCAGCTG 1135 Query 1136 AGTTATTAGGTAGAGGAACAGTGGGGACCACTTATAAAGCATTGCTTGATAGCCGTTTGA 1195 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1136 AGTTATTAGGTCGAGGAACAGTGGGGACCACTTATAAAGCGTTGCTTGATAGCCGTTTGA 1195 Query 1196 TCGTCACTGTAAAGAGATTAGATGCCATTAGATTAGCGGGTGTAGGGAGAGAGAAATTTG 1255 ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1196 TCGTCACGGTGAAGAGATTAGATGCCATTAGATTAGCGGGTGTAGGGAGAGACAAATTTG 1255 Query 1256 AGCGTCACATGGAATCAGTTGGTGCTTTAGGGCATCCGAATTTGGTACCACTCAGAGCTT 1315 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1256 AGCATCACATGGAATCAGTTGGTGCTTTAGGGCATCCGAATTTGGTTCCACTCAGAGCTT 1315 Query 1316 ATTTTCAGGCCAAGGAAGAGAGGTTATTGATTTATGATTATTTGCCAAATGGCAGTCTCT 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 ATTTTCAGGCCAAGGAAGAGAGGTTATTGATTTATGATTATTTGCCAAATGGCAGTCTCT 1375 Query 1376 CGTCTCTTGTCCATGGTACAAAATCGTCGAGGGCAACGCCATTGCATTGGACATCATGCT 1435 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1376 CGTCTCTTGTCCACGGTACAAAATCGTCGAGGGCAACGCCATTGCATTGGACATCTTGTT 1435 Query 1436 TGAAGATAGCAGAAGATGTGGCTCAGGGTCTCTCTTACATCCACCAAGCGTGGCAGCTTG 1495 |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| | Sbjct 1436 TGAAGATAGCAGAAGACGTCGCTCAGGGTCTCTCTTACATCCACCAAGCATGGCAGCTAG 1495 Query 1496 TTCATGGCAATCTCAAATCCTCTAATGTCCTTCTCGGACCAGACTTCGAAGCTTGTATTG 1555 |||| ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| Sbjct 1496 TTCACGGCAATCTCAAATCCTCTAATGTCCTTCTTGGACAAGACTTTGAAGCTTGTATTG 1555 Query 1556 CCGATTACTGTCTCGTTGCTCTTGCAACAAACCCTCCTCTAACATCTAATGACGGTCAAG 1615 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1556 CTGATTACTGTCTCGTTGCTCTTGCAACAAACCCTCCTCTAACATCCAATGACGGTCAAG 1615 Query 1616 AAGACGCGGATGCAGCGGCTTATAAAGCCCCTGAAGCTCGACACAAGAGTGTAGATTATC 1675 |||||||||||||||| || |||||| ||||||||||||||||||||||| || |||||| Sbjct 1616 AAGACGCGGATGCAGCAGCCTATAAACCCCCTGAAGCTCGACACAAGAGTCTAAATTATC 1675 Query 1676 AATCTGTTAAAGCTGATGTATATTCTTTTGGGATTCTTCTCTTGGAGCTTTTGACAGGGA 1735 |||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1676 AATCGGTTAAGGCTGATGTATACTCCTTTGGGATTCTTCTCTTGGAGCTTTTGACAGGGA 1735 Query 1736 AGCAACCTTCGAAGATTCCGGTTTTACCGTTGGATGAGATGATTGAATGGGTGAGGAAAG 1795 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 1736 AGCAACCTTCGAAGATTCCGGTTTTGCCTTTGGATGAGATGATCGAATGGGTGAGGAAAG 1795 Query 1796 TGAGAGAGGAAGGTGAGAAGAAGAATGGGAATTGGCGAGAGGATAGAGATAAATTCGGAA 1855 ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct 1796 TGAGAGAGGAAGGTGAGAAGAAGAATGGGAATTGGAGAGAAGATAGGGATAAATTCGGAA 1855 Query 1856 TGTTGACTGAAGTTGCGGTAGCTTGTAGCTTAACATCGCCCGAACAGAGACCAACGATGT 1915 |||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| Sbjct 1856 TGTTGACTGAAGTTGCGGTAGCTTGTAGCTTAGCATCGCCGGAACAGAGACCGACGATGT 1915 Query 1916 GGCAAGTGTTGAAAATGTTGCAGGAGATTAAAGAAGCGGCTGTGATGGAAGAGTGTGAAC 1975 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1916 GGCAAGTGTTGAAAATGTTGCAAGAGATTAAAGAAGCGGCTGTGATGGAAGAGTGTGAAC 1975 Query 1976 TTGTTATGGATTCTTCCAATTCTGAAAGCTCCTAATTAA----GGACAGTAATTTTATTT 2031 |||||||||||||| | |||||||||||||| ||||||| ||||||| ||||||||| Sbjct 1976 TTGTTATGGATTCTGCTAATTCTGAAAGCTCTTAATTAATTAAGGACAGTCATTTTATTT 2035 Query 2032 TTTCTCAACTAAATCTCTCTTTCATGTCTCTTTCACTAATCTTAAAACT 2080 ||||| ||||||||||||||| ||||||||| |||||||||||||||| Sbjct 2036 TTTCTTAACTAAATCTCTCTT-CATGTCTCT--CACTAATCTTAAAACT 2081 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103111919430 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5