BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494702
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATP... 2322 0.0
AT1G45000.1 | Symbols: | AAA-type ATPase family protein | chr1... 1465 0.0
> AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATPase
4A | chr5:17248290-17251134 REVERSE LENGTH=1593
Length=1593
Score = 2322 bits (1257), Expect = 0.0
Identities = 1440/1528 (94%), Gaps = 14/1528 (1%)
Strand=Plus/Plus
Query 1 AAACCCATTGCTCAAGAAAACTCTTT-AGACAAATTTGTTTCGAG-AAAGATCGTTTGCT 58
|||||||||||||||||||||| ||| ||||| |||||||||||| |||||||| |||||
Sbjct 1 AAACCCATTGCTCAAGAAAACT-TTTCAGACAGATTTGTTTCGAGAAAAGATCGCTTGCT 59
Query 59 TCGG-TTTTAAGAAAAATCTGAGATCTATCTGTAGAAGAAGCAGCA-AAAGGATTCAGAA 116
| || |||| || | ||||||||||||||||||||||||||||| | | || ||||||||
Sbjct 60 T-GGCTTTTCAGGATAATCTGAGATCTATCTGTAGAAGAAGCAG-ATACAGAATTCAGAA 117
Query 117 ACTATGACCGACGTCGATGAATCCGTTAGACGCCGTACCGCTGCGGTCTCCGAGTACCGG 176
|| ||||||||||||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 118 ACGATGACCGACGTCGATGAATCCGTTAGACGCCGTACAGCCGCCGTTTCCGAGTACCGG 177
Query 177 AAAAAGCTCCTCCAACATAAGGAACTCGAATCCCGTGTTCGAACAGCTAGGGACAACTTA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 AAAAAGCTCCTCCAACATAAGGAACTCGAATCCCGTGTTCGAACAGCTAGGGAGAACTTA 237
Query 237 AGAGGAGCTAAAAAGGAGTTCAACAAAACTGAGGATGATCTTAAGTCTCTTCAAAGTGTT 296
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 238 AGAGGAGCTAAAAAGGAATTCAACAAAACCGAGGATGATCTCAAGTCTCTTCAAAGTGTT 297
Query 297 GGGCAGATTATTGGAGAAGTTCTTCGACCTCTGGATAATGAAAGATTGATTGTCAAAGCG 356
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 298 GGGCAGATTATTGGAGAAGTGCTTCGACCCCTGGATAATGAAAGATTGATTGTGAAAGCG 357
Query 357 AGCAGTGGTCCTCGTTATGTGGTGGGTTGCCGAAGCAAAGTCGATAAGGAAAAGCTAACC 416
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 AGCAGTGGTCCACGTTATGTGGTGGGTTGCCGAAGCAAAGTGGATAAGGAAAAGCTAACC 417
Query 417 TCAGGAACTCGAGTTGTTCTGGATATGACAACACTAACAATAATGCGAGCCCTTCCCCGA 476
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 418 TCCGGAACTCGAGTTGTTCTCGATATGACAACACTAACAATTATGCGAGCCCTTCCCCGA 477
Query 477 GAAGTTGATCCTGTTGTTTATAACATGCTTCATGAAGACCCAGGCAACATTAGCTATTCC 536
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 478 GAAGTTGATCCTGTTGTTTATAACATGCTTCATGAAGACCCTGGCAACATTAGCTACTCC 537
Query 537 GCGGTTGGTGGTTTAGGTGATCAGATCAGAGAACTCAGGGAATCTATTGAGCTACCTCTC 596
|| || || || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 GCTGTCGGAGGGTTAGGTGATCAGATCAGAGAACTCAGGGAATCTATTGAGCTCCCTCTC 597
Query 597 ATGAATCCCGAGCTTTTCCTCAGAGTAGGGATCAAACCTCCAAAGGGTGTTCTTCTGTAT 656
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 ATGAATCCTGAGCTTTTCCTCAGAGTAGGGATCAAACCTCCAAAGGGTGTCCTTCTGTAT 657
Query 657 GGACCTCCGGGTACTGGAAAAACTCTACTAGCGAGGGCTATAGCCAGCAACATCGATGCC 716
|||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 658 GGACCTCCAGGTACTGGAAAAACTCTACTAGCCAGGGCTATTGCCAGCAACATCGATGCT 717
Query 717 AACTTCTTGAAGGTTGTATCTAGTGCAATAATAGACAAATACATTGGAGAAAGTGCTAGG 776
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 718 AACTTCTTGAAGGTTGTATCCAGTGCAATCATAGACAAGTACATTGGAGAAAGTGCTAGG 777
Query 777 CTGATCCGGGAGATGTTTAACTATGCCCGTGAACACCAGCCTTGTATCATTTTCATGGAT 836
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 778 CTGATTCGGGAGATGTTTAACTATGCCCGTGAACATCAGCCTTGTATCATATTCATGGAT 837
Query 837 GAAATCGATGCTATTGGTGGGCGTCGTTTTAGTGAGGGAACTAGTGCTGATCGTGAAATT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAATCGATGCTATTGGTGGGCGTCGTTTTAGTGAGGGAACTAGTGCTGATCGTGAAATT 897
Query 897 CAAAGAACACTTATGGAGTTACTCAATCAGCTTGATGGGTTTGACAACCTCGGAAAGGTG 956
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 CAAAGAACGCTTATGGAGTTACTCAACCAGCTTGATGGGTTTGACAACCTCGGAAAGGTG 957
Query 957 AAAATGATAATGGCCACAAACAGGCCAGATGTGCTTGATCCTGCGCTTCTCCGTCCGGGA 1016
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 AAAATGATAATGGCCACAAACAGGCCTGATGTGCTTGATCCTGCGCTTCTCCGTCCGGGA 1017
Query 1017 AGGTTAGATAGGAAGATTGAGATCCCTTTGCCAAATGAGCAATCAAGAATGGATATTCTC 1076
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1018 AGGTTAGATAGAAAGATTGAGATCCCTTTGCCAAACGAGCAGTCAAGAATGGATATTCTT 1077
Query 1077 AAGATCCATGCAGCTGGTATCGCCAAACATGGTGAAATTGACTACGAGGCTATTGTCAAA 1136
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1078 AAGATCCATGCAGCTGGTATCGCCAAACATGGTGAAATCGATTACGAGGCTATTGTCAAA 1137
Query 1137 CTTGCTGAGGTTTGTTTCAATGGTGCTGATCTGCGTAACATATGCACGGAAGCTGGAATG 1196
||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTTGCAGAGG---GATTCAATGGTGCTGATCTGCGTAACATATGCACGGAAGCTGGAATG 1194
Query 1197 TTTGCAATCCGAGCAGAGCGGGACTATGTGATCCATGAAGATTTCATGAAGGCGGTGAGA 1256
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1195 TTTGCAATCCGAGCAGAGCGGGATTATGTGATCCATGAAGATTTCATGAAGGCGGTGAGA 1254
Query 1257 AAGCTCAGTGAGGCAAAGAAACTCGAGTCGAGTTCGCACTATAACGCTGATTTTGGAAAA 1316
||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1255 AAGCTGAGTGAGGCCAAGAAACTGGAGTCCAGTTCGCACTATAACGCTGATTTTGGAAAA 1314
Query 1317 GAGTGAGAGGGTACAC--TCTTTCTTGTGCTTTAGGGATGAAGAAAGGACATTGCAATGG 1374
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GAGTGAGAGAGTACACACTCTTTCTTGTGCTTTAGGGATGAAGAAAGGACATTGCAATGA 1374
Query 1375 CAGTTTCGTATTATTTATTGGCAATGTGAAACTTGTTTGTTTTA-CTTTTTGAGGAGCAA 1433
| || ||||||| |||||| |||||||||||||||||| ||||| || ||| | |||||
Sbjct 1375 CTGTCTCGTATTCTTTATTAGCAATGTGAAACTTGTTT-TTTTAACTCTTTCAAAAGCAA 1433
Query 1434 AGCTTGTTGTGGACTGTGTGCTTAGTTACTACGTTTTAGTAATTTAGTGCGTCAAACAAG 1493
||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1434 AGCTTGTTGTGAAGTGTGTGCTTAGTTACTACGTTTCAGTAATTTAGTGCTTCAAACAAG 1493
Query 1494 CATTTACCTCTTTTCTCGTTGGTATTGT 1521
|||||||||||||||||||||||| |||
Sbjct 1494 CATTTACCTCTTTTCTCGTTGGTACTGT 1521
> AT1G45000.1 | Symbols: | AAA-type ATPase family protein | chr1:17009141-17011886
FORWARD LENGTH=1558
Length=1558
Score = 1465 bits (793), Expect = 0.0
Identities = 1056/1185 (89%), Gaps = 9/1185 (1%)
Strand=Plus/Plus
Query 143 TAGACGCCGTACCGCTGCGGTCTCCGAGTACCGGAAAAAGCTCCTCCAACATAAGGAACT 202
||||||||||||||| ||||| | || |||||||| |||||||| || || ||||| ||
Sbjct 103 TAGACGCCGTACCGCGGCGGTGACTGATTACCGGAAGAAGCTCCTTCATCACAAGGAGCT 162
Query 203 CGAATCCCGTGTTCGAACAGCTAGGGACAACTTAAGAGGAGCTAAAAAGGAGTTCAACAA 262
|||||||||||| |||||||||||||| || ||||||| |||||| ||||| ||||||||
Sbjct 163 CGAATCCCGTGTCCGAACAGCTAGGGAGAATTTAAGAGCAGCTAAGAAGGAATTCAACAA 222
Query 263 AACTGAGGATGATCTT-AAGTCTCTTCAAAGTGTTGGGCAGATTATTGGAGAAGTTCTTC 321
||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| || |
Sbjct 223 AACTGAGGATGAT-TTGAAGTCTCTTCAAAGCGTTGGCCAGATTATTGGAGAAGTACTAC 281
Query 322 GACCTCTGGATAATGAAAGATTGATTGTCAAAGCGAGCAGTGGTCCTCGTTATGTGGTGG 381
| ||||| ||||| || |||||||||| || || || ||||| ||||||||||||||||
Sbjct 282 GTCCTCTTGATAACGAGCGATTGATTGTTAAGGCAAGTAGTGGCCCTCGTTATGTGGTGG 341
Query 382 GTTGCCGAAGCAAAGTCGATAAGGAAAAGCTAACCTCAGGAACTCGAGTTGTTCTGGATA 441
|||| || ||||| || || ||||||||||| || || |||||||||||||| |||||||
Sbjct 342 GTTGTCGTAGCAAGGTGGACAAGGAAAAGCTTACTTCTGGAACTCGAGTTGTCCTGGATA 401
Query 442 TGACAACACTAACAATAATGCGAGCCCTTCCCCGAGAAGTTGATCCTGTTGTTTATAACA 501
|||| || || ||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 402 TGACTACGCTGACAATTATGCGAGCCCTTCCTCGTGAAGTTGATCCTGTTGTTTATAACA 461
Query 502 TGCTT-CATGAAGACCCAGGCAACATTAGCTATTCCGCGGTTGGTGGTTTAGGTGATCAG 560
|| || |||||||| |||||||||||||| || || || || ||||||||||||||||||
Sbjct 462 TG-TTGCATGAAGATCCAGGCAACATTAGTTACTCAGCTGTGGGTGGTTTAGGTGATCAG 520
Query 561 ATCAGAGAACTCAGGGAATCTATTGAGCTACCTCTCATGAATCCCGAGCTTTTCCTCAGA 620
||||||||||| ||||||||||||||||| |||||||||||||| || |||||||| |||
Sbjct 521 ATCAGAGAACTTAGGGAATCTATTGAGCTGCCTCTCATGAATCCTGAACTTTTCCTTAGA 580
Query 621 GTAGGGATCAAACCTCCAAAGGGTGTTCTTCTGTATGGACCTCCGGGTACTGGAAAAACT 680
|| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 581 GTTGGGATTAAACCTCCTAAGGGTGTCCTTCTGTATGGACCTCCGGGTACTGGAAAAACT 640
Query 681 CTACTAGCGAGGGCTATAGCCAGCAACATCGATGCCAACTTCTTGAAGGTTGTATCTAGT 740
|||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 641 CTACTAGCTAGGGCTATTGCCAGCAATATCGACGCCAACTTCTTGAAGGTTGTATCTAGT 700
Query 741 GCAATAATAGACAAATACATTGGAGAAAGTGCTAGGCTGATCCGGGAGATGTTTAACTAT 800
||||| |||||||||||||||||||||||||||||| |||| || || ||||||||||||
Sbjct 701 GCAATCATAGACAAATACATTGGAGAAAGTGCTAGGTTGATTCGAGAAATGTTTAACTAT 760
Query 801 GCCCGTGAACACCAGCCTTGTATCATTTTCATGGATGAAATCGATGCTATTGGTGGGCGT 860
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 761 GCTCGTGAACATCAGCCTTGTATCATTTTCATGGATGAAATCGATGCTATTGGTGGACGC 820
Query 861 CGTTTTAGTGAGGGAACTAGTGCTGATCGTGAAATTCAAAGAACACTTATGGAGTTACTC 920
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CGTTTTAGTGAAGGAACTAGTGCTGATCGTGAAATTCAAAGAACACTTATGGAGTTACTT 880
Query 921 AATCAGCTTGATGGGTTTGAC-AACCTCGGAAAGGTGAAAATGATAATGGCCACAAACAG 979
|| |||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||
Sbjct 881 AACCAGCTTGATGGGTTTGACCAACTT-GGAAAGGTGAAAATGATAATGGCCACCAACAG 939
Query 980 GCCAGATGTGCTTGATCCTGCGCTTCTCCGTCCGGGAAGGTTAGATAGGAAGATTGAGAT 1039
||| ||||| |||||||| || |||||||||||||| ||||||||||| ||||| |||||
Sbjct 940 GCCGGATGTTCTTGATCCAGCACTTCTCCGTCCGGGTAGGTTAGATAGAAAGATCGAGAT 999
Query 1040 CCCTTTGCCAAATGAGCAATCAAGAATGGATATTCTCAAGATCCATGCAGCTGGTATCGC 1099
||| ||||||||||| |||||||||||||| || ||||||||||| ||| |||| || ||
Sbjct 1000 CCCGTTGCCAAATGAACAATCAAGAATGGAAATCCTCAAGATCCACGCATCTGGCATTGC 1059
Query 1100 CAAACATGGTGAAATTGACTACGAGGCTATTGTCAAACTTGCTGAGGTTTGTTTCAATGG 1159
||| ||||| ||||| ||||| |||||||| || ||||||| |||| ||||||||||
Sbjct 1060 CAAGCATGGAGAAATAGACTATGAGGCTATCGTGAAACTTGGAGAGG---GTTTCAATGG 1116
Query 1160 TGCTGATCTGCGTAACATATGCACGGAAGCTGGAATGTTTGCAATCCGAGCAGAGCGGGA 1219
||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||
Sbjct 1117 TGCCGATCTGCGTAACATATGCACTGAAGCTGGAATGTTCGCAATCAGAGCAGAGCGTGA 1176
Query 1220 CTATGTGATCCATGAAGATTTCATGAAGGCGGTGAGAAAGCTCAGTGAGGCAAAGAAACT 1279
|||||| || |||||||| ||||||||||| ||||||||||| || ||||| ||||| ||
Sbjct 1177 CTATGTAATACATGAAGACTTCATGAAGGCTGTGAGAAAGCTGAGCGAGGCCAAGAAGCT 1236
Query 1280 CGAGTCGAGTTCGCACTATAACGCTGATTTTGGAAAAGAGTGAGA 1324
|||||||| || ||||||||||| |||||||| ||||||| |||
Sbjct 1237 TGAGTCGAGCTCTCACTATAACGCGGATTTTGGGAAAGAGTAAGA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5