BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494703
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 634 0.0
> AT5G43000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:17246354-17247202
REVERSE LENGTH=849
Length=849
Score = 634 bits (343), Expect = 0.0
Identities = 428/470 (91%), Gaps = 2/470 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATCCTAACTCCGGTCATAAAACTCGTGGTTTTTAGGCAAAGTCTTCGACCACAT 60
||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATGGCGATCCTAACTCCCGTCATTAAACTCGTTGTTTTTAGGCAAAGTCTACGACCACAT 60
Query 61 TCAGCTATTGCATTCCTCGTTGAGTTCCTTTGCTTCGTCTTAGAATTACTCGACAAGGAG 120
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCTGCTATTGCATTCCTCGTTGAGTTTCTTTGCTTCGTCTTAGAATTACTCGACAAGGAG 120
Query 121 AAAGATCTAGCCAAAATATTCGGTATTGTATGTGCTTGCGACACATTAATCTTCACTTTG 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AAAGATCTAGCCAAAATATTCGGTATCGTATGTGCTTGCGACACATTAATCTTCACTTTG 180
Query 181 CTTGACCTAATCCAAAATCTGCTCGAGGAAGAAGTGAAAATACGGCGATGCGGTCGAGTG 240
|| || || ||||||| | || ||||||||||||||||||||| ||||||| ||||||
Sbjct 181 CTCGATCTTATCCAAAGTTTGATCGAGGAAGAAGTGAAAATACAAAGATGCGGCCGAGTG 240
Query 241 TTTTGGCTCTACACAAAGGACGAAAGGCTCTATTGGCACACATTAAACGCGTATCTAGTC 300
|||||||| |||||||| || | || ||||||||||||||||||||||| ||||| |
Sbjct 241 TTTTGGCTTTACACAAACGATGGGAGCCTCTATTGGCACACATTAAACGCATATCTTTTG 300
Query 301 ATGTTATGCATCGTCCATGTCATCGGTTCTACGATCTCTTACGTTTCTCATAGACATTAT 360
||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 301 ATGTTATGCATTGTCCACGTCATCGGTTCCACGATCTCTTACGTTTCTCATAAACATTAT 360
Query 361 CTAGTCTTGCTCCCGCTTTTTGCAGCAGGACTCGAACTCGTCCCACAAGAAGCCTATCGG 420
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 361 CTAGTCTTGCTCCCGCTTTTCGCAGCCGGACTCGAACTCGTCCCACAAGAAGCCTATCGA 420
Query 421 GTTCTTGGACCGGATCAAGAGTCAC-AAGACTGTATCGGGCCTCTTAATG 469
||||||||||||||||||||||| || | | ||| | |||||||||||
Sbjct 421 GTTCTTGGACCGGATCAAGAGTCTGGAA-ATTCTATTGAGCCTCTTAATG 469
Score = 350 bits (189), Expect = 1e-95
Identities = 249/277 (90%), Gaps = 7/277 (3%)
Strand=Plus/Plus
Query 394 GAACTCGTCCCACAAGAAGCCTATCGGGTTCTTGGACCGGATCAAGAGTCACAAGACTGT 453
|||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||
Sbjct 559 GAACTCGTCCCACAAGAAACCAATCGGGTTCTTGGACCGGACCAAGAGTCACAAAACTGT 618
Query 454 ATCGGGCCTCTTAATGACCCATC-GTATGGAAAAGATCAAACCCTTCAAGATGATATTG- 511
|||||| |||||||||||||||| | |||||||||| |||| |||||||||||||||||
Sbjct 619 ATCGGGGCTCTTAATGACCCATCAG-ATGGAAAAGACCAAAACCTTCAAGATGATATTGT 677
Query 512 GCCTAAATCAAGAGTCACAAGACTG---CATTGCACCTCATCAAGGTCCATTAGCTGATA 568
| ||| |||||||||||||||| || ||||||||||||||| ||||||||| || ||
Sbjct 678 G-CTAGATCAAGAGTCACAAGATTGTATTATTGCACCTCATCAATGTCCATTAGATGGTA 736
Query 569 TTGAGCTAGAACAAGAAATGGTTGTTCATGTTGAGCCTCTTCAAGATTCACTAGATGGTA 628
|||| ||| ||||||||| ||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 737 TTGACCTACAACAAGAAACGGTAGTTCACGTTGAGCCTCTTCAAGACCCACTAGATGGTA 796
Query 629 TTGAGCTAGAGCAAGAAGTGGCTGTTCATGTTGGGCC 665
||||||||||||||||||||||| |||||||||||||
Sbjct 797 TTGAGCTAGAGCAAGAAGTGGCTATTCATGTTGGGCC 833
Score = 134 bits (72), Expect = 1e-30
Identities = 86/93 (92%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 553 GGTCCATTAGCTGATATTGAGCTAGAACAAGAAATGGTTGTTCATGTTGAGCCTCTTCAA 612
||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 469 GGTCCATTAAATGGTATTGAGCTTGAACAAGGAATGGTTGTTCATGTTGAGCCTCTTCAA 528
Query 613 GATTCACTAGATGGTATTGAGCTAGAGCAAGAA 645
|| |||||||||||||||||||||||||||||
Sbjct 529 GAGCCACTAGATGGTATTGAGCTAGAGCAAGAA 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32149854080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5