BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494707

Length=825
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42960.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1254    0.0  


> AT5G42960.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast 
envelope; EXPRESSED IN: 24 plant structures; EXPRESSED 
DURING: 13 growth stages; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17235092-17236679 
FORWARD LENGTH=935
Length=935

 Score = 1254 bits (679),  Expect = 0.0
 Identities = 768/811 (95%), Gaps = 5/811 (1%)
 Strand=Plus/Plus

Query  17   CTCTGctctctctctctctctctctctACTCTGCGAAAATGGCGATGAAGGCTTCTCTCA  76
            |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct  56   CTCT-CTCTCTCTCTCTCTCTATCTCTACTGTGCGAAAATGGCGATGAAGGCTTCTATCA  114

Query  77   AAGGCAAGTACGATGCTGACAAAACCAGCGGAATCGGTTCACTAGCTTTCAACGCCGGCG  136
            |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  115  AAGGCAAGTACGATACTGACAAAACCAGTGGAATCGGTTCACTTGCTTTCAACGCCGGCG  174

Query  137  ATATTAAGCTACGCGCCACCATGACCGATGCTACTCTCGTCGCCGGTCCTACTTTGACCG  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  175  ATATTAAGCTACGCGCCACCATGACCGATGCTACTCTCGTCGCCGGTCCTACTTTGACCG  234

Query  197  GTCTCTCTCTCGCCGTCGAAAAGCCTGGTTCCTTCAT-GATCGAGTACAACGTCCCTAAG  255
            ||||| ||||||| || || ||||||||||||||||| | ||||||||||||||||||| 
Sbjct  235  GTCTCGCTCTCGCTGTAGAGAAGCCTGGTTCCTTCATCG-TCGAGTACAACGTCCCTAAA  293

Query  256  AAGGATGTTAGGTTTCAGTTCATGAACACGGTAAGAATTGCGGAGAAGCCTTTGAATTTG  315
            ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  294  AAGGATGTTAGGTTTCAGTTCATGAACACAGTAAGAATTGCAGAGAAGCCTTTGAATTTG  353

Query  316  ACTTACATTCATAGCAGAGCTGATAACCGAACAATTGTCGATGGGAGCCTTGTGATTGAT  375
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  354  ACTTACATTCATAGCAGAGCTGATAACAGAACAATTGTCGATGGGAGCCTTGTGATTGAT  413

Query  376  TCTGCAAACAAACTCTCTGCTAACCACATGGTGGGGACGAACAACTGTAAGCTTAAGTAT  435
            |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct  414  TCTGCAAACAAACTCTCTGCTAACCACATGGTTGGGACAAACAACTGTAAGATTAAGTAT  473

Query  436  ACCTATGCACATGGAGGGTTAGCTACGTTTGAGCCGTGCTATGACTTGGCGAAGAATACA  495
            |||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct  474  ACCTATGCTCATGGAGGGTTAGCTACGTTCGAGCCGTGTTATGACTTGGCGAAAAATACA  533

Query  496  TGGGATTTTGCGGTTTCTCGAAGATTTTATAGTGGTGACACTGTCAGGGCAACTTATCAG  555
            |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct  534  TGGGATTTTGCGGTTTCTCGAAGATTTTATAGTGGTGATAATGTGAGGGCAACTTATCAG  593

Query  556  ACATCTAGTAAGTTGCTGGGTATGGAATGGTCAAGGAACAACAAAGCAAGTGGAATCAAG  615
            || |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  594  ACGTCTAGTAAGTTGTTGGGTATGGAATGGTCAAGGAACAACAAAGCAAGTGGATTCAAG  653

Query  616  GTATGTGCGTCTGTGAATCTTGCGGATGAAGTGAAAACGCCGAAATTGACTGCAGAAACT  675
            |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  654  GTATGTGCGTCTGTGAATCTTGCGGATGAACTGAAAACGCCGAAATTGACCGCAGAAACT  713

Query  676  ACATGGAACCTTGAAATGTAGTCCCCACTATACACTACTTAGCTAAGTGTCACTTCAATT  735
            ||||||||||||||||||||||| |  || |||||||||||||||||| |||||||||||
Sbjct  714  ACATGGAACCTTGAAATGTAGTCTCTTCTTTACACTACTTAGCTAAGTTTCACTTCAATT  773

Query  736  GTTTGGTGTTGCAACACATTTAACTAGTCGGTTCTTCCAAATCTTCCGAAATTTTGTTGC  795
            ||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct  774  GTTTGGTGTTGCAACACATTTTACTAGTCGGTTCTTGCGAATCTTCCGAAATTTTGTTGC  833

Query  796  AACAGTTTCTCATTATAAT-ACCTAGCAGTT  825
            |||||||||||||||| || || ||||||||
Sbjct  834  AACAGTTTCTCATTATTATTAC-TAGCAGTT  863



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40187317600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5