BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494728
Length=2592
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42920.2 | Symbols: THO5, AtTHO5 | THO complex, subunit 5 |... 4071 0.0
AT1G45233.2 | Symbols: THO5, AtTHO5 | THO complex, subunit 5 |... 603 4e-171
> AT5G42920.2 | Symbols: THO5, AtTHO5 | THO complex, subunit 5
| chr5:17206151-17209545 REVERSE LENGTH=2642
Length=2642
Score = 4071 bits (2204), Expect = 0.0
Identities = 2476/2606 (95%), Gaps = 23/2606 (1%)
Strand=Plus/Plus
Query 1 AATGGAGGACGGCGAAATAGAGGAAGGAATGGTGACAACCGACGAATTCCCGACGCCGGA 60
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 23 AATGGAGGACGGCGAAATAGAGGAAGGAATGGTAACTGCCGACGAATTCCCGACGCCGGA 82
Query 61 AGT-A--ACCACAGAGACTACACAACCACCGCGAGAGCC-GTGTAAATCTCCACTCGAGC 116
||| | |||| |||||||| |||||| || |||||||| | | ||||||||||||||||
Sbjct 83 AGTAACTACCATAGAGACTATACAACCTCCCCGAGAGCCAG-GAAAATCTCCACTCGAGC 141
Query 117 TACTTCGAGAAAGCAAAACCTCCGTAGAAGAAATCGTTTCAAAGATGCTCTCAATGAAAA 176
|||||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 142 TACTTCGAGAGAGCAAAACCTCCGTAGAAGAAATCGTCGCGAAGATGCTCTCCATGAAAA 201
Query 177 AACAAGGAAATCAAAAATCCGAGATTCGAGAACTCCTCACACAAATGTTCCTCAACTTCG 236
|||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 202 AACAAGGAAACCACAAATCTGAGATTCGAGAACTCCTCACTCAAATGTTCCTCAACTTCG 261
Query 237 TCAATCTTCGTCAGGCGAATCGTGCGATTTTGACTGAGGAAGATAAAGTGAAGGCGGAGA 296
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 262 TCAATCTTCGTCAGGCGAATCGGGCGATTTTGACTGAGGAAGATAAAGTGAAAGCGGAGA 321
Query 297 CGGAACGAGCAAAGGCACCAGTTGATTTCACAACATTGCAATTGCATAATCTTATGTATG 356
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 322 CGGAAAGAGCAAAGGCACCTGTTGATTTCACGACATTGCAATTGCATAATCTTATGTATG 381
Query 357 AGAAGAGTCATTACGTTAAAGCTATTAAGGCTTGTAGAGATTTCAAATCTAAGTATCCTG 416
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 382 AGAAGAGCCATTACGTTAAAGCTATCAAGGCTTGTAGAGATTTCAAATCTAAGTATCCTG 441
Query 417 ATATTGACCTTGTTCCTGAACAAGACTTCTTTCGTCATGCTCCTGAAGCTATCAAAGACC 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 442 ATATTGACCTTGTTCCTGAACAAGACTTCTTTCGTCATGCTCCTGAAGCTATCAAAGATC 501
Query 477 AATCGCTTTCAAGTGATAGTTCACATGTTTTGATGCCTAAGAGACTCAATTTTGAGCTTC 536
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 502 AATCGCTTTCAAGTGATAGTTCTCATGTTTTGATGCCTAAGAGACTCAATTTTGAGCTTC 561
Query 537 ATCAGAGGAAAGAATTGTGTAAGCAACGAGCGAGATTGGAGCAACAGAAGAAGAGTTTAC 596
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 562 ATCAGAGGAAAGAATTGTGTAAGCATCGAGCGAGATTGGAGCAACAGAAGAAGAGTTTAT 621
Query 597 TAGAAACTATTGCAGAGCGTAAGAAGTTTTTGTCAAGTCTTCCTCTTCACCTTAAGTCTC 656
||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 622 TAGAAACCATTGCGGAGCGTAAGAAGTTTTTGTCGAGTCTTCCTCTACACCTTAAGTCTC 681
Query 657 TGAAGAAAGCATCGCTTCCAGTACAGAACCAGTTGGGTATCCAGCACACAAAGAAACTGA 716
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 682 TGAAGAAAGCATCGCTTCCAGTACAGAACCACTTGGGTATACAGCACACAAAGAAACTGA 741
Query 717 AGCAGCATAATCTT-GCTGAGCTGCTTCCTCCTCCGCTTTATGTAATTTACTCACAGCTC 775
||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 742 AGCAGCATAAT-TTAGCTGAGCTGCTTCCTCCTCCGCTTTATGTTCTATACTCACAGCTC 800
Query 776 TTGGCACAAAAGGAAGCTTTTGAGGAGAGTATCGAATTGGAGGTAGTTGGGAGTCTTAAG 835
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 801 TTGGCACAAAAGGAAGCTTTTGAGGAGAGTATTGAATTGGAGGTAGTTGGGAGTCTTAAG 860
Query 836 GATGCTCAAGCTTATGCTAGACAACAATCGAAAAAGGACTCGGGTATGTTGAATAATACA 895
||||||||||||||||||||||||||||| | ||||||||| ||||||| || |||||||
Sbjct 861 GATGCTCAAGCTTATGCTAGACAACAATCCAGAAAGGACTCAGGTATGTCGAGTAATACA 920
Query 896 GAAAGTTCTAGGTTGGAGGATGATGGACCTGATGACGATGATGATGGACAAAGGAGAAGA 955
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GAGAGTTCTAGGTTGGAGGATGATGGACCTGATGACGATGATGATGGACAAAGGAGAAGA 980
Query 956 AAACGACCCAAGAAACTTACTAGCAAAGAAGGTTCTGACAAGGCAGGATTATATCAAGTC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AAACGACCCAAGAAACTTACTAGCAAAGAAGGTTCTGACAAGGCAGGATTATATCAAGTC 1040
Query 1016 CACCCTCTCAAAATTGTCCTTCACATATATGATGATGAGATACCTGATACAAAATCCCTC 1075
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1041 CACCCTCTCAAAATTGTCCTTCACATATATGATGATGAGATACCAGATACAAAATCCTTG 1100
Query 1076 AAACTTGTCATTCTCAAGTTTGAGTACGTGCTGAAGTTGAATGTTGTATGTGTTGGCGCT 1135
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1101 AAACTTGTCATTCTCAAGTTTGAGTACTTGCTGAAGTTGAATGTTGTATGTGTTGGCGCT 1160
Query 1136 GAAGGCTCTCAGGATGGACCAGAGAAAAACATCTTTTGTAACTTATTTCCAGACGACGCT 1195
||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct 1161 GAAGGCTCTCAGGATGGACCAGAAAAAAACATATTTTGTAACTTGTTTCCAGATGACGCT 1220
Query 1196 GGACTTGAGCCTCCTCATCAGTCAACCAAGCTCATCCTTGGTGATGGTCAGGCATTTGAT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1221 GGACTTGAGCCTCCTCATCAGTCAACCAAGCTCATCCTTGGTGATGGTCAGACGTTTGAT 1280
Query 1256 GAGAACAGAACTTCAAGGCCTTACAAATGGGTGCAACATTTGGCGGGAATTGATATTTTA 1315
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
Sbjct 1281 GAGAACAGAACTTCAAGGCCTTATAAATGGGTACAACATTTGGCGGGAATTGATATTTCA 1340
Query 1316 CCGATTTTATTAGGCCAAGAAGCTCATAACACTGACTCAGCTAAAAGTGATACGTTTGTG 1375
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1341 CCGGTTTTATTAGGCCAAGAAGCTCATAACACTGACCCAGCTAAAAGTGATACGTTTGTG 1400
Query 1376 CCTGATCTTTCATTGTATCGCCAGCAGCATAGAGTGCAAACAGTTCTGCAAAGAATACGC 1435
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1401 CCTGATCTTTCATTGTATCGCCAGCAGCATAGAGTGCAAACAGTTCTGCGAAGAATACGC 1460
Query 1436 TCGCGGAAAAAAGCGCATCTGGCCCTTGCGGAACAGCTTGATTTGCTTATGAAACATGAG 1495
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1461 TTGCGGAAAAAAGCGCATCTGGCTCTTGCGGAACAGCTTGATTTGCTTATGAAACATGAG 1520
Query 1496 TTACCAGTGGTGAACTGCGAAGACGCTCCTTGGGCACTGCATAATGTTCTCTGTGCTTTG 1555
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1521 TTACCAGTGGTGAACTGCGAAGATGCTCCTTGGGCACTGCATAAGGTTCTCTGTGCTTTG 1580
Query 1556 GATTCCTGGTTACATATACGATCTTCAGCTAGTAAGTCATGCTCTCTGACTCTAAACAGT 1615
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1581 GATTCCTGGTTACATATACAATCTTCAGCTAGTAAGTCATGCTCTCTGACTCTGAACAGT 1640
Query 1616 GTGGAACAAGTTCCAGAACCTATGGAAATCGATGTAGATGGGAGATCTGTTTCTGGAAAG 1675
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1641 GTGGAACAAGTTCCAGAACCTATGGAAATCGATGTAGATGGAAGATCTATTTCTGGAAAA 1700
Query 1676 GAAGATCTTGAAACTATACGGGAAGATGGAGAACTTCCCTCTTTGGTCACAGCGGCTGCT 1735
|||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1701 GAAGATTTTGAAAGTATACGGGAAGATGGAGAACTTCCCTCTTTGGTCACGGCGGCTGCT 1760
Query 1736 TCGTTAACCAGTTCCAATCATACCCCATCGAAAGTATCTAATCAAGCACGGTCAAGGCAG 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 TCGTTAACCAGTTCCAATCATACCCCATCGAAAGTATCTAATCAAGCACGGTCAAGGCAG 1820
Query 1796 TTGGCCTTGATGACAAAGAACCTAGATTCTCCAATTAGCAAAGGAAAGTCACCAAGTTTC 1855
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1821 TTGGCCTTGATGACAAAGAATCTAGATTCTCCGATTAGCAAAGGAAAGTCCCCAAGTTTC 1880
Query 1856 AAGAAATACGAAGATGATTTGGATCTTGTTTTGGA---TGATAGTGAAGTAGATGAGCCA 1912
|||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 1881 AAGAAATACGAAGATGATTTGGATCTTGTTCTGGACGATGATAGTGAAATAGATGAGCCA 1940
Query 1913 GC---AA---CTGAGGCACATGTAGAAGCGTTGTGCCCTGAGAAAGCTGATAATTCATGG 1966
| || ||||||| ||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 1941 ACCGGAAGAACTGAGGCGCATGTGGAAGAGTTATGCCCTGAGAAAGCTGATAATTCATGG 2000
Query 1967 GTGGATTATGGTGCGAGAGAGTTTGCACTTGTGCTCTCCAGGAAAATAGATGGCGGAAAA 2026
|||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 2001 GTGGATTATGGTTCGAGAGAGTTTGCGCTTGTGTTCTCCAGGAAAACAGATGGCGGAAAG 2060
Query 2027 TTGTGGAAGTTAGAAGCAACGGTTCGTGTTAGCATGGAGTATCCTCTTCGACCTCCTTTG 2086
||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 2061 TTGTGGAAGTTAGAAGCAATGGTACAAATTAGCATGGAGTATCCTCTTCGACCTCCTTTG 2120
Query 2087 TTTTCTCTGTCTCTCCATGCTTCTTCTTCGCCAGGAAATGACAATGGGACAAATGAAAGT 2146
||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||
Sbjct 2121 TTTTCTCTGTCTCTCCACGCATCTTCTTCATCAGGAAATGAAAATGGGACAAATGAAAGT 2180
Query 2147 GACCATTACAATGAACTTCGAGCAATGGAAGCAGAAGTGAACCTTCATATGTTGAAGATT 2206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2181 GACCATTACAATGAACTTCGAGCAATGGAAGCAGAAGTGAACCTTCATATGTTGAAGATT 2240
Query 2207 ATTCCTTCAGATCAAGAAAACTATCTCCTATCTCATCAGATCAGATGCTTAGCAATGTTG 2266
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2241 ATTCCTTCAGATCAAGAAAACTATCTCCTATCTCATCAAATCAGATGCTTAGCAATGTTG 2300
Query 2267 TTCGACTATTACGTGGACGACCCATCTCCAGATTCCAAAAGAGGAACAGCCACAACTGTG 2326
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2301 TTCGACTATTACGTGGATGACCCATCTCCAGATTCCAAAAGAGGAACAGCCACAACTGTG 2360
Query 2327 GTTGATGTCGGTTTGTGCAAGCCTGTAGACGGTAAGCTTCTTGTGAGATCATTCAGAGGC 2386
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2361 GTTGATGTCGGTTTGTGCAAGCCTGTTGACGGTAAGCTTCTTGTGAGATCATTCAGAGGC 2420
Query 2387 AGAGATCACCGGAAAATGATCTCATGGAAGGGCAGAGGATGTGCATCGGGTTATCCATGC 2446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2421 AGAGATCACCGGAAAATGATCTCATGGAAGGGCAGAGGATGTGCATCGGGTTATCCATGC 2480
Query 2447 TAGGAGATTACATCACCGCCACTCATTTCTCTATATTATCTTTCCCTGTTGGTACAAGCA 2506
||| |||||||||| |||||||| |||||||||||||||||| ||| |||||||||||
Sbjct 2481 TAG-AGATTACATC---GCCACTCACTTCTCTATATTATCTTTCTCTGGTGGTACAAGCA 2536
Query 2507 AAGGTTTTTGCATGGAACATTTTTTCTTAGTCGTATAAACCGTTATTGAAACAGCCTTCT 2566
|| ||||||||||| |||||||||| | | ||||||||||||||||||||||||||| ||
Sbjct 2537 AAAGTTTTTGCATGTAACATTTTTT-T-A-TCGTATAAACCGTTATTGAAACAGCCTACT 2593
Query 2567 TGTTGAGTGAGGACCTGGTCTGTTTT 2592
||||| ||||||||||||||||||||
Sbjct 2594 TGTTGGGTGAGGACCTGGTCTGTTTT 2619
> AT1G45233.2 | Symbols: THO5, AtTHO5 | THO complex, subunit 5
| chr1:17152934-17154843 FORWARD LENGTH=1562
Length=1562
Score = 603 bits (326), Expect = 4e-171
Identities = 624/766 (81%), Gaps = 28/766 (4%)
Strand=Plus/Plus
Query 101 AAATCTCCACTCGAGCTACTTCGAGAAAGCAAAACCTCCGTAGAAGAAATCGTTTCAAAG 160
||||| ||||| |||||||||| | ||| |||| ||||||| |||| |||| | |||||
Sbjct 65 AAATCACCACTAGAGCTACTTCAACAAACCAAAGCCTCCGTCGAAGCAATCATAGCAAAG 124
Query 161 ATGCTCTCAATGAAAAAACAAGGAAATCAAAAATCCGAGATTCGAGAACTCCTCACACAA 220
|||||||| || || ||||||||| | |||||||||| ||||||||||||||| ||
Sbjct 125 ATGCTCTCCATCAAGCAACAAGGAACCCCTAAATCCGAGAATCGAGAACTCCTCACTCAG 184
Query 221 ATGTTCCTCAACTTCGTCAATCTTCGTCAGGCGAATCG-TGCGATT-TTGACT-GAGGAA 277
||||| ||||||||| ||||||||||||| |||||||| | ||||| || | | || |||
Sbjct 185 ATGTTTCTCAACTTCATCAATCTTCGTCAAGCGAATCGCT-CGATTCTT-A-TAGAAGAA 241
Query 278 GATAAAGTGAAG-GCGGAGACGGAACGAGCAAAGGCACCAGTTGATTTCACAACATTGCA 336
|| |||||| || | || |||||| |||||| | || || |||||||| || ||| |
Sbjct 242 GAGAAAGTG-AGAACAGAAACGGAAATAGCAAAATCTCCGGTGGATTTCACGACGTTGGA 300
Query 337 -ATTGCATAATCTTATGTATGAGAAGAGTCATTACGTTAAAGCTATTAAGGCTTGTAGAG 395
|| || ||||| ||||||||||||||||||||| | ||||||| ||| ||| ||||||
Sbjct 301 GCTT-CACAATCTCATGTATGAGAAGAGTCATTACCTCAAAGCTAATAAAGCTAGTAGAG 359
Query 396 ATTTCAAATCTAAGTATCCTGATATTGACCTTGT-TCCTGAACAAGACTTCTTTC-GTCA 453
|||||||||||| |||||| | || || || | ||| |||||||||||| ||| || |
Sbjct 360 ATTTCAAATCTAGGTATCCAAACATCGATCTCATATCC-GAACAAGACTTC-TTCAGTGA 417
Query 454 TGCTCCTGAAGCTATCAAAGAC-CAATCGCTT-TCAAGTGATAGTTCACATGTTTTGATG 511
|||||| ||||| |||||| | ||| || || |||| ||||||||| |||| |||||||
Sbjct 418 TGCTCCCGAAGCAATCAAA-TCTCAAACG-TTATCAAATGATAGTTCTCATGATTTGATG 475
Query 512 CCTAAGAGACTCAATTTTGAGCTTCATCAGAGGAAAGAATTGTGTAAGCA-ACGAGCGAG 570
| ||| |||||||||||||||||||||||||||||||| | || |||| | ||| |||
Sbjct 476 CTTAAAAGACTCAATTTTGAGCTTCATCAGAGGAAAGAGCTATGCAAGCTTA-GAGTGAG 534
Query 571 ATTGGAGCAACAGAAGAAGAGTTTACTAGAAACTATTGCAGAGCGTAAGAAGTTTTTGTC 630
|||||||||||||||||||||||||| |||| || ||| ||| | || |||||| ||||
Sbjct 535 GTTGGAGCAACAGAAGAAGAGTTTACTTGAAAGTAATGCGGAGAGGAACAAGTTTCTGTC 594
Query 631 AAGTCTTCCTCTTCACCTTAAGTCTCTGAAGAAAGCATCGCTT-CCAGTACAGAACCAGT 689
||||||||| | || || || ||||| ||||||||||| || |||||||||| |||||
Sbjct 595 AAGTCTTCCAGTGCATCTCAAATCTCTAAAGAAAGCATCT-TTGCCAGTACAGAGCCAGT 653
Query 690 TGGGTATCCAGCA-CACAAAGAAACTGAAGCAGCATAATCTTGCTGAGCTGCTTCCTCCT 748
|| || | ||| | || || ||| |||||| | |||||||| |||||||| ||||||||
Sbjct 654 TGAGTTTGCAGAATCAGAA-GAAGCTGAAGTATCATAATCTAGCTGAGCTTCTTCCTCCG 712
Query 749 CCGCTTTATGTAATTTACTCACAGCTCTTGGCACAAAAGGAAGCTTTTGAGGAGAGTATC 808
||||||||||| || || || ||| || |||||| ||||||||||| || |||| ||||
Sbjct 713 CCGCTTTATGTTATATATTCGCAGTTCATGGCACTGAAGGAAGCTTTCGAAGAGAATATC 772
Query 809 GAA-TTGGAGGTAGT-TGGGAGTCTTAAGGATGCTCAAGCTTATGC 852
|| ||| ||||| | |||||||||||||||||||||| |||||||
Sbjct 773 GATGTTG-AGGTA-TCTGGGAGTCTTAAGGATGCTCAAACTTATGC 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128678208795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5