BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494732
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1814 0.0
> AT5G42860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G45688.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:17183066-17184916 REVERSE LENGTH=1295
Length=1295
Score = 1814 bits (982), Expect = 0.0
Identities = 1134/1206 (94%), Gaps = 15/1206 (1%)
Strand=Plus/Plus
Query 27 TCTCATCTTCTGCTTCTTCATCTTCCATTCCAATCTCAAGATGCACGCCAAAACCGACTC 86
||||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 20 TCTCATCTTCTACTTGTTCATCTTCCATTCCAATCTCAAGATGCACGCGAAGACCGACTC 79
Query 87 AGAGGTGACAAGCCTCTCAGCTTCATCACCAACTAGATCTCCCCGCCGTCCCGCGTACTT 146
|||||||||||||||||||||||||| || |||||||||||||| || || || |||||
Sbjct 80 CGAGGTGACAAGCCTCTCAGCTTCATCGCCGACTAGATCTCCCCGTCGACCAGCCTACTT 139
Query 147 CGTCCAATCTCCATCACGTGACTCTCACGATGGAGAGAAAACAGCAACATCATTCCACTC 206
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 140 CGTCCAATCTCCATCACGTGACTCCCACGATGGGGAGAAAACAGCAACATCATTCCACTC 199
Query 207 AACACCGGTCCTCACCAGCCCAATGGGATCTCCACCACATTCTCACTCTTCCTCAAGCCG 266
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 200 AACACCGGTACTCACCAGCCCGATGGGATCTCCACCACATTCTCACTCTTCCTCAAGCCG 259
Query 267 CTTCTCCAAGATCAATGGCTCAAAACGCAAAGGCCACGCTGGAGAAAAACAGTTCGCTAT 326
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 260 CTTCTCCAAGATCAACGGCTCAAAACGTAAGGGCCACGCTGGAGAAAAACAGTTCGCTAT 319
Query 327 GATTGAAGAAGAAGGTCTTCTTGATGATGGAGATAGAGAACAAGAACCTTTGCCTCGTCG 386
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 320 GATTGAAGAAGAAGGTCTTCTTGATGATGGAGATAGAGAACAAGAAGCTTTGCCTCGTCG 379
Query 387 ATGTTATGTCTTAGCTTTCATTGTTGGATTCTCTTTGCTCTTTGCTTTCTTCTCTTTGAT 446
||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 380 ATGTTATGTTTTAGCTTTCATTGTTGGATTCTCTCTACTCTTTGCTTTCTTCTCTTTGAT 439
Query 447 TCTTTATGCAGCTGCTAAACCTCAGAAACCTAAGATCTCTGTTAAGAGTATAACGTTCGA 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 440 TCTTTATGCAGCTGCTAAACCTCAGAAACCTAAGATCTCTGTTAAGAGTATAACGTTTGA 499
Query 507 GCAACTTAAGGTTCAGGCTGGACAAGATGCGGGAGGTATTGGAACTGATATGATCACGAT 566
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 500 GCAACTTAAGGTTCAAGCTGGACAAGATGCTGGAGGTATAGGAACTGATATGATCACTAT 559
Query 567 GAATGCGACGCTGAGAATGTTGTATCGTAACACTGGTACTTTCTTTGGTGTTCATGTCAC 626
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 560 GAACGCGACACTGAGAATGTTGTACCGTAACACTGGTACTTTCTTTGGTGTTCATGTCAC 619
Query 627 TTCTTCTCCGATTGATCTTAGCTTCTCTCAGATCACTATCGGTTCTGGATCTGTCAAGAA 686
||||||||||||||||||||||||||| ||||||||||| || ||||| ||| | |||||
Sbjct 620 TTCTTCTCCGATTGATCTTAGCTTCTCGCAGATCACTATTGGCTCTGGCTCTATTAAGAA 679
Query 687 ATTTTATCAGTCAAGAAAAAGCCAAAGAACAGTGGTGGTGAATGTGCTTGGAGACAAGAT 746
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 680 GTTTTATCAGTCAAGGAAAAGCCAAAGAACAGTGGTGGTGAATGTACTTGGAGACAAGAT 739
Query 747 TCCTCTCTATGGAAGTGGCTCAACCTTAGTCCCACCACCACCTCCTGCACCAATTCCAAA 806
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 740 TCCACTCTATGGAAGTGGCTCAACATTAGTCCCACCACCACCTCCTGCACCAATTCCAAA 799
Query 807 ACCTAAGAAGAAGAAAGGACCCATCGTTATCGTCGAACCACCAGTGCCTCCTGCTCCAGT 866
||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 800 ACCCAAGAAGAAGAAAGGACCTATCGTTATCGTCGAACCACCAGCGCCTCCTGCTCCAGT 859
Query 867 ACCGATGAGGCTAAACTTCACCGTTAGATCTCGAGCTTACGTGTTGGGGAAGTTAGTTCA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ACCGATGAGGCTAAACTTCACCGTTAGATCTCGAGCTTACGTGTTGGGGAAGTTAGTTCA 919
Query 927 ACCTAAGTTTTACAAGAGAATCGTGTGTTTGATTAATTTCGAACACAAGAAACTCAGTAA 986
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 920 ACCTAAGTTTTACAAGAGAATCGTGTGCTTGATTAATTTCGAACACAAGAAACTCAGTAA 979
Query 987 ACATATTCCAATCACGAATAACTGCACTGTCACATCTATTTAAAGGG-GAAATAAA--CA 1043
||||||||| |||||||||||||||||||||||||||||||||| | |||| ||| ||
Sbjct 980 ACATATTCCCATCACGAATAACTGCACTGTCACATCTATTTAAAAGAAGAAAAAAATACA 1039
Query 1044 CATGAGAGTGCGAACGGTCTCGTATTGGGTAGTG----T--G-C--TATACATGTTACCA 1094
|||||||||||| ||||||||||||||||||||| | | | |||||||||||| |
Sbjct 1040 CATGAGAGTGCGGACGGTCTCGTATTGGGTAGTGCGCCTATGGCCCTATACATGTTACAA 1099
Query 1095 GGTAGTGCGTGTGGCCTACCCCAAAGCAGAAGAATCATCATCAGTTGGTTTCATAAATTT 1154
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1100 GGTATTGCGTGTGGCCTACCCCAAAGCAGAAGAATCATCATCAGTGGGTTTCATAAATTT 1159
Query 1155 AATTTATGTAAGTGAATTGAGAGATTTTTGTTAATGATACA--GTAAACGAGAAGATTCA 1212
|||||| |||| || |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1160 AATTTACGTAATTGGTTTGAGAGATTTT-GTTAATGATACACAGTAAACGAGAAGATTCA 1218
Query 1213 CATTTT 1218
||||||
Sbjct 1219 CATTTT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5