BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494732 Length=1218 Score E Sequences producing significant alignments: (Bits) Value AT5G42860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1814 0.0 > AT5G42860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45688.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17183066-17184916 REVERSE LENGTH=1295 Length=1295 Score = 1814 bits (982), Expect = 0.0 Identities = 1134/1206 (94%), Gaps = 15/1206 (1%) Strand=Plus/Plus Query 27 TCTCATCTTCTGCTTCTTCATCTTCCATTCCAATCTCAAGATGCACGCCAAAACCGACTC 86 ||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||| Sbjct 20 TCTCATCTTCTACTTGTTCATCTTCCATTCCAATCTCAAGATGCACGCGAAGACCGACTC 79 Query 87 AGAGGTGACAAGCCTCTCAGCTTCATCACCAACTAGATCTCCCCGCCGTCCCGCGTACTT 146 |||||||||||||||||||||||||| || |||||||||||||| || || || ||||| Sbjct 80 CGAGGTGACAAGCCTCTCAGCTTCATCGCCGACTAGATCTCCCCGTCGACCAGCCTACTT 139 Query 147 CGTCCAATCTCCATCACGTGACTCTCACGATGGAGAGAAAACAGCAACATCATTCCACTC 206 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 140 CGTCCAATCTCCATCACGTGACTCCCACGATGGGGAGAAAACAGCAACATCATTCCACTC 199 Query 207 AACACCGGTCCTCACCAGCCCAATGGGATCTCCACCACATTCTCACTCTTCCTCAAGCCG 266 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 200 AACACCGGTACTCACCAGCCCGATGGGATCTCCACCACATTCTCACTCTTCCTCAAGCCG 259 Query 267 CTTCTCCAAGATCAATGGCTCAAAACGCAAAGGCCACGCTGGAGAAAAACAGTTCGCTAT 326 ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct 260 CTTCTCCAAGATCAACGGCTCAAAACGTAAGGGCCACGCTGGAGAAAAACAGTTCGCTAT 319 Query 327 GATTGAAGAAGAAGGTCTTCTTGATGATGGAGATAGAGAACAAGAACCTTTGCCTCGTCG 386 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 320 GATTGAAGAAGAAGGTCTTCTTGATGATGGAGATAGAGAACAAGAAGCTTTGCCTCGTCG 379 Query 387 ATGTTATGTCTTAGCTTTCATTGTTGGATTCTCTTTGCTCTTTGCTTTCTTCTCTTTGAT 446 ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 380 ATGTTATGTTTTAGCTTTCATTGTTGGATTCTCTCTACTCTTTGCTTTCTTCTCTTTGAT 439 Query 447 TCTTTATGCAGCTGCTAAACCTCAGAAACCTAAGATCTCTGTTAAGAGTATAACGTTCGA 506 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 440 TCTTTATGCAGCTGCTAAACCTCAGAAACCTAAGATCTCTGTTAAGAGTATAACGTTTGA 499 Query 507 GCAACTTAAGGTTCAGGCTGGACAAGATGCGGGAGGTATTGGAACTGATATGATCACGAT 566 ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || Sbjct 500 GCAACTTAAGGTTCAAGCTGGACAAGATGCTGGAGGTATAGGAACTGATATGATCACTAT 559 Query 567 GAATGCGACGCTGAGAATGTTGTATCGTAACACTGGTACTTTCTTTGGTGTTCATGTCAC 626 ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 560 GAACGCGACACTGAGAATGTTGTACCGTAACACTGGTACTTTCTTTGGTGTTCATGTCAC 619 Query 627 TTCTTCTCCGATTGATCTTAGCTTCTCTCAGATCACTATCGGTTCTGGATCTGTCAAGAA 686 ||||||||||||||||||||||||||| ||||||||||| || ||||| ||| | ||||| Sbjct 620 TTCTTCTCCGATTGATCTTAGCTTCTCGCAGATCACTATTGGCTCTGGCTCTATTAAGAA 679 Query 687 ATTTTATCAGTCAAGAAAAAGCCAAAGAACAGTGGTGGTGAATGTGCTTGGAGACAAGAT 746 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 680 GTTTTATCAGTCAAGGAAAAGCCAAAGAACAGTGGTGGTGAATGTACTTGGAGACAAGAT 739 Query 747 TCCTCTCTATGGAAGTGGCTCAACCTTAGTCCCACCACCACCTCCTGCACCAATTCCAAA 806 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 740 TCCACTCTATGGAAGTGGCTCAACATTAGTCCCACCACCACCTCCTGCACCAATTCCAAA 799 Query 807 ACCTAAGAAGAAGAAAGGACCCATCGTTATCGTCGAACCACCAGTGCCTCCTGCTCCAGT 866 ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 800 ACCCAAGAAGAAGAAAGGACCTATCGTTATCGTCGAACCACCAGCGCCTCCTGCTCCAGT 859 Query 867 ACCGATGAGGCTAAACTTCACCGTTAGATCTCGAGCTTACGTGTTGGGGAAGTTAGTTCA 926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 860 ACCGATGAGGCTAAACTTCACCGTTAGATCTCGAGCTTACGTGTTGGGGAAGTTAGTTCA 919 Query 927 ACCTAAGTTTTACAAGAGAATCGTGTGTTTGATTAATTTCGAACACAAGAAACTCAGTAA 986 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 920 ACCTAAGTTTTACAAGAGAATCGTGTGCTTGATTAATTTCGAACACAAGAAACTCAGTAA 979 Query 987 ACATATTCCAATCACGAATAACTGCACTGTCACATCTATTTAAAGGG-GAAATAAA--CA 1043 ||||||||| |||||||||||||||||||||||||||||||||| | |||| ||| || Sbjct 980 ACATATTCCCATCACGAATAACTGCACTGTCACATCTATTTAAAAGAAGAAAAAAATACA 1039 Query 1044 CATGAGAGTGCGAACGGTCTCGTATTGGGTAGTG----T--G-C--TATACATGTTACCA 1094 |||||||||||| ||||||||||||||||||||| | | | |||||||||||| | Sbjct 1040 CATGAGAGTGCGGACGGTCTCGTATTGGGTAGTGCGCCTATGGCCCTATACATGTTACAA 1099 Query 1095 GGTAGTGCGTGTGGCCTACCCCAAAGCAGAAGAATCATCATCAGTTGGTTTCATAAATTT 1154 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1100 GGTATTGCGTGTGGCCTACCCCAAAGCAGAAGAATCATCATCAGTGGGTTTCATAAATTT 1159 Query 1155 AATTTATGTAAGTGAATTGAGAGATTTTTGTTAATGATACA--GTAAACGAGAAGATTCA 1212 |||||| |||| || |||||||||||| |||||||||||| ||||||||||||||||| Sbjct 1160 AATTTACGTAATTGGTTTGAGAGATTTT-GTTAATGATACACAGTAAACGAGAAGATTCA 1218 Query 1213 CATTTT 1218 |||||| Sbjct 1219 CATTTT 1224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59839049640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5