BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494737
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-... 1565 0.0
AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sm... 614 8e-175
> AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H
type family protein | chr5:17169283-17171704 REVERSE
LENGTH=1495
Length=1495
Score = 1565 bits (847), Expect = 0.0
Identities = 959/1014 (95%), Gaps = 4/1014 (0%)
Strand=Plus/Plus
Query 1 ctctctctctctctcCGGCTCACACGAGTCGCTAATCAAATAACCCTAAACCCTAGATCG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2 CTCTCTCTCTCTCTCCGGCTCACACGAGTCGCTAATCAAATAAACCTAAACCCTAGATCG 61
Query 61 TGATCGGAAACAACACCTCCTCGTCGGCGATAGCTTCTCTTCCACTAAAAGCAACTCCTC 120
||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 62 TGATCGGCAACGGCACCTCCTCGTCGGCGATAGCTTCTCTTCCACTAAAAGAAAATCCTC 121
Query 121 TTCGGTGAAAATGGCAGAGCATTTGGCTTCAATCTTTGGTACTGAAAAAGATAGAGTGAA 180
|||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 122 TTCGGTGAGAATGGCAGAGCATTTAGCTTCAATCTTTGGTACTGAAAAGGATAGAGTGAA 181
Query 181 TTGTCCGTTTTACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTGTCCGTTTTACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCA 241
Query 241 TAACCGTCCCACTATCTCCCCGACGCTCCTTCTCTCGAACATGTATCAGAGACCTGACAT 300
|||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct 242 TAACCGTCCCACCATCTCGCCGACGCTTCTCCTCTCGAACATGTACCAGAGACCTGACAT 301
Query 301 GATAACTCCAGGTGTGGATCCTCAGGGTCAGCCATTAGACCCGAGTAAGATCCAAGACCA 360
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 302 GATAACTCCAGGTGTGGATCCTCAGGGACAGCCGTTAGACCCGAGTAAGATCCAAGACCA 361
Query 361 CTTTGAGGATTTCTATGAAGATATTTTCGAAGAACTTAACAAGTTTGGTGAAGTGGAGAG 420
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 362 CTTTGAGGATTTCTACGAAGATATTTTCGAAGAACTCAACAAGTTTGGTGAAGTGGAGAG 421
Query 421 TCTCAATGTTTGTGATAACCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAA 480
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCTCAATGTTTGTGACAATCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAA 481
Query 481 GGAGGAGGATCACGCTGCTGCTGCGTTGCAGGCTTTGCAAGGGAGGTTTTACTCTGGACG 540
||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || ||
Sbjct 482 GGAGGAGGATCACGCAGCTGCTGCGTTGCAGGCTTTGCAGGGGAGATTTTATTCCGGTCG 541
Query 541 TCCTATCATTGCTGATTTCTCTCCTGTGACGGATTTCCGGGAAGCTACTTGTAGGCAGTA 600
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 542 TCCTATCATTGCTGATTTCTCTCCTGTGACGGATTTTAGGGAAGCTACTTGTAGGCAGTA 601
Query 601 TGAAGAAAACAGTTGTAACCGTGGTGGGTATTGTAATTTCATGCATGTGAAGCAGATTTC 660
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 602 TGAAGAAAACAGCTGTAACCGTGGTGGGTACTGTAATTTCATGCATGTGAAGCAGATTTC 661
Query 661 GAGGGAGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGGTCATACCGCCGGGGAAGTAG 720
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 662 GAGGGAGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGTTCATACCGTCGGGGAAGCAG 721
Query 721 AAGCCGGAGCAGGAGTATAAGCCCTCGACGCAAGAGAGAGCATTCGCGGGAGCGAGAGAG 780
||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 722 AAGTCGAAGCAGGAGTATAAGCCCTCGACGTAAGAGAGAGCATTCGCGAGAGCGAGAGAG 781
Query 781 AGGGGAT-TTGAGGGACCGTGACCGCCATGGAAATGGGAAACGAAGCAGTGATAGATCAG 839
|||||| || |||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 782 AGGGGACGTT-AGGGACCGTGACCGGCATGGAAATGGGAAAAGGAGCAGTGATAGATCAG 840
Query 840 AGAGGCATGATCGAGATGGTGGTGGAAGAAGGAGACATGGAAGCCCGAAACGGAGCAGAA 899
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 AGAGGCATGATCGGGATGGTGGTGGAAGGAGGAGACATGGAAGCCCGAAACGGAGCAGAA 900
Query 900 GTCCACGAAATGTGAGAGAAGGAAGTGAGGAAAGGAGGGCAAGAATTGAGCAATGGAACC 959
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 901 GCCCACGAAATGTGAGAGAAGGAAGCGAGGAAAGGAGGGCGAGAATTGAGCAATGGAACC 960
Query 960 GAGAACGCGATGAGGGAGTTTAAGAGTAAT-GTTTGGACTGATTGCTTCAGAAA 1012
||||||| |||||||||||||||| ||| | |||||| |||||| ||||| |||
Sbjct 961 GAGAACGTGATGAGGGAGTTTAAGGGTA-TCGTTTGGGCTGATTACTTCATAAA 1013
> AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor
small subunit, putative | chr1:9614551-9616357 FORWARD LENGTH=1405
Length=1405
Score = 614 bits (332), Expect = 8e-175
Identities = 517/607 (85%), Gaps = 10/607 (2%)
Strand=Plus/Plus
Query 131 ATGGCAGAGCATTTGGCTTCAATCTTTGGTACTGAAAAAGATAGAGTGAATTGTCCGTTT 190
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || |||
Sbjct 200 ATGGCGGAGCATTTGGCTTCAATCTTTGGTACTGAGAAAGACAGAGTGAATTG-CCCTTT 258
Query 191 -TACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCATAACCGTCC 249
||||| |||||||| ||||| ||||| |||||||||||||| || ||||| ||||||||
Sbjct 259 CTACTTCAAGATTGGCGCTTGCCGTCATGGTGACCGGTGCTCGCGTCTTCACAACCGTCC 318
Query 250 CACTATCTCCCCGACGCTCCTTCTCTCGAACATGTATCAGAGACCTGACATGATAACTCC 309
|| |||||||| || |||||||| || |||||||| || || ||||||||||| || ||
Sbjct 319 TACCATCTCCCCAACACTCCTTCTTTCAAACATGTACCAAAGGCCTGACATGATTACCCC 378
Query 310 AGGTGTGGATC-CTCAGGGTCAGCCATTAGACCCGAGTAAGATCCAAGACCACTTTGAGG 368
||||| || | ||||||| || ||| | |||||| ||||||| || || ||||||||||
Sbjct 379 TGGTGTTGA-CGCTCAGGGCCAACCACTCGACCCGCGTAAGATTCAGGAGCACTTTGAGG 437
Query 369 ATTTCTATGAAGATATTTTCGAAGAACTT-AACAAGTTTGGTGAAG-TGGAGAGTCTCAA 426
|||||| ||| ||| |||| || || ||| | |||||||| | || | ||||| |||||
Sbjct 438 ATTTCTTTGAGGATCTTTTTGAGGAGCTTGGA-AAGTTTGGCG-AGATAGAGAGCCTCAA 495
Query 427 TGTTTGTGATAACCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAAGGAGGA 486
||||||| ||||||||||| || |||||||| || || ||||||| ||||||||| ||
Sbjct 496 CATTTGTGACAACCTTGCTGACCACATGATTGGCAACGTATATGTTCAGTTTAAGGAAGA 555
Query 487 GGATCACGCTGCTGCTGCGTTGCAGGCTTTGCAAGGGAGGTTTTACTCTGGACGTCCTAT 546
|||||| ||||| ||||| ||||||||| ||||||| ||||| || || |||||||| ||
Sbjct 556 GGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTAGGTTCTATTCAGGACGTCCCAT 615
Query 547 CATTGCTGATTTCTCTCCTGTGACGGATTTCCGGGAAGCTACTTGTAGGCAGTATGAAGA 606
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 616 CATTGCTGATTTCTCTCCTGTGACGGATTTCCGCGAAGCCACGTGTAGGCAGTATGAAGA 675
Query 607 AAACAGTTGTAACCGTGGTGGGTATTGTAATTTCATGCATGTGAAGCA-GATTTCGAGGG 665
||||| || |||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 676 AAACAACTGCAACCGTGGTGGGTACTGTAATTTCATGCATGTGAAGCTTG-TTTCGAGGG 734
Query 666 AGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGGTCATACCGCCGGGGAAGTAGAAGCC 725
| || ||||| ||| | |||||||| ||||| || ||||||||| | ||||||||||||
Sbjct 735 AACTAAGGAGAAAACTCTTTGGGAGATATCGGCGATCATACCGCAGAGGAAGTAGAAGCA 794
Query 726 GGAGCAG 732
|||||||
Sbjct 795 GGAGCAG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59487645825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5