BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494740
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28667.1 | Symbols: | pseudogene, hypothetical protein | ch... 1254 0.0
AT5G28672.1 | Symbols: | transposable element gene | chr5:1070... 1007 0.0
AT4G05526.1 | Symbols: | transposable element gene | chr4:2811... 401 5e-111
AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 363 2e-99
AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 359 3e-98
AT1G43723.1 | Symbols: | transposable element gene | chr1:1649... 228 9e-59
> AT5G28667.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10690062-10691087 FORWARD LENGTH=1026
Length=1026
Score = 1254 bits (679), Expect = 0.0
Identities = 880/974 (90%), Gaps = 26/974 (3%)
Strand=Plus/Plus
Query 1 GAATGTCTCTTGATTGTTTTAGATCATTATGTGACAAAATGGAAACAAGTTATGGATTAC 60
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 10 GAATGTCTCTTGATTGTTTTAGATCAATATGTGACATAATGGAAACAAGTTATGGATTAC 69
Query 61 AACCTACATTGAATGTTAGCATTGAAGAGAGTGTCGCCATGTTTTTACGTATATGTGGAC 120
||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 70 AACCTACATTGAATGTTAGCATTGAAGAGTGTGTTGCCATGTTTTTACGGATATGTGGAT 129
Query 121 ACAATGAAGTTCAAAGAGATGTTGGGTTACGATTTTTTGAAGTCCTTAGAGCAACAAAGT 180
||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 130 ACAATGAAGGTCAAAGAGATGTTGGGTTGCGATTTTTTGAAGGCCTTAGAGTGACAAAGT 189
Query 181 TACTTACTTGTGATTATATCAAGACTCCAACAAGACAAGAACTACGTCGAATTCCTGAAA 240
||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 190 TACTTGCTTGTGATTGTATCAAGACGCCAACAACACAAGAACTACGTCGAATTCATGAAA 249
Query 241 AACTGCAAATGGATCGAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATAGATG 300
|| | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 250 AAGTACAAATGGATCGAAGATATTGGTCATATTTTAGTG-ATTTGTTGGAGCTATAGATG 308
Query 301 GAGTTCATGTATGTGTTAAGGTGAAGCCTGGAACTACAAGGAATGTATTGGAATCGACAC 360
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 309 GAGTTCATGT--GTGTTAAGGTGAAGCCTA-AACTACAAGGAATGTATTGGAATTGACAC 365
Query 361 GATAGAACATCGTTTAATATCATGGCAATATGTGATATAAATATGTTGTTTACATATGTT 420
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 366 GATAGAACATCATTTAATATCATGGCCGTATGTGATATAAATATGTTGTTTTCATATGTT 425
Query 421 TGGAACGGAGCACCTGGATCATGTCACGATACAGCAGTTCTAACGATGGCACAAGATAAT 480
|| || |||||| |||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 426 TGAAATAGAGCACATGGATCGTGTCACGATACAGTAGTTCTAACGATGGTACAAGATAAT 485
Query 481 GATTCTGAATTTCCTTTGCCTCCGAGAGACAAGTATTATGTAGTTGATTCTGGGTATCCA 540
|||| |||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||
Sbjct 486 GATTATGAATTTCCTTTGCCTCCTAGACACAAGTATTATGTAGTTGATTTTGGGTATCCA 545
Query 541 AATAAACAAGGCTTTTTGGCACCTTATAGATCTTCGCGGAACGGGGTTGTTAGGTATCAC 600
|||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 546 AATAAACAAGGCTTTTTGGCACCTTATAGATCTTCGCGGAACAGAGTTGTTAAGTATCAC 605
Query 601 ATGTCACAGTTCTACAATGGTCCTCCTCCAAGAAATAAACAAGAGTTGTTTAATCGATGC 660
||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||||
Sbjct 606 ATGTCACAGTTCTACAATGTTCCTTCTCTTAGGAATAAACAAGAGTTGTTTAATCGATGT 665
Query 661 CATGCAT-A-----CA-TT----------T-GGAGTTTGGAAGAAAAAATGGAGGATTCT 702
||||||| | || || | |||||||| ||||||||||||||||||||
Sbjct 666 CATGCATGAAAAATCAATTGAAAGGACAATTGGAGTTTGAAAGAAAAAATGGAGGATTCT 725
Query 703 AAGTGATTTTCCCAGATATGATATTGATGTTaaaaaaaaaGTGGTAATGGCTACAATGAG 762
|||| |||||||||||||||||||||||| |||||| |||||||| ||||||| |
Sbjct 726 TTGTGAATTTCCCAGATATGATATTGATGTTCAAAAAAGAGTGGTAACAATTACAATGGG 785
Query 763 ACTACATAATTTTATCAGAATTTCGAATTATTTTGACGAAGA-TTTTGTTGAAGTGA-TG 820
|||| ||||||||||||| |||||||||||||||||||| || ||||| ||||| || ||
Sbjct 786 ACTATATAATTTTATCAGGATTTCGAATTATTTTGACGA-GAATTTTGATGAAG-GAATG 843
Query 821 GGAGATACAAATATCAACAACGTAAATTCTGAGAATGATCTAGATGACATGGAGAGTGGT 880
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 844 AGAAATACAAATATCAACAACGTAAATTCTGAGAATGATCTAGATGACATGGAGAGAGGT 903
Query 881 GGTATACCTGATGGAAATCATATGGCAAATATAAGAGAAAATATTGCAGATATGTTATGG 940
||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 904 GGTATACCTGATGAAAATTATATGGCAAATATAAGAAAAAATATTGTTGATATGTTATGG 963
Query 941 GCAAATCAAAATAC 954
|||| |||||||||
Sbjct 964 GCAACTCAAAATAC 977
> AT5G28672.1 | Symbols: | transposable element gene | chr5:10700385-10701826
FORWARD LENGTH=1442
Length=1442
Score = 1007 bits (545), Expect = 0.0
Identities = 739/827 (89%), Gaps = 35/827 (4%)
Strand=Plus/Plus
Query 152 ATTTTTTGAAGTCCTTAGAGCAACAAAGTTACTTACTTGTGATTATATCAAGACTCCAAC 211
||||||||||||||||||||| ||| || ||||| |||||||||||||||| || |||||
Sbjct 409 ATTTTTTGAAGTCCTTAGAGCGACATAGATACTTGCTTGTGATTATATCAAAACGCCAAC 468
Query 212 AAGACAAGAACTACGTCGAATTCCTGAAAAACTGCAAATGGATCGAA-GATATTGGCCAT 270
|| ||||||||||||||||||||||||| |||| ||||||||| || ||||||| |||
Sbjct 469 AACACAAGAACTACGTCGAATTCCTGAATAACTATAAATGGATC-AACAATATTGGTCAT 527
Query 271 ATTTTAGTGGATTTGTTGGAGCTATAGATGGAGTTCATGTATGTGTTAAGGTGAAGCCTG 330
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
Sbjct 528 ATTTTAGTGGATTTGTTGGAGGTATAAATGGAGTTCATGTATGTGTTAAGGTGAAGCAT- 586
Query 331 GAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATA 390
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 587 TAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCAAGGCCATA 646
Query 391 TGTGATATAAATATGTTGTTTACATATGTTTGGAACGGAGCACCTGGATCATGTCACGAT 450
||||||||||||||||||||||||||||||||||| ||||||| |||||| || ||||||
Sbjct 647 TGTGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACTTGGATCGTGCCACGAT 706
Query 451 ACAGCAGTTCTAACGATGGCACAAGATAATGATTCTGAATTTCCTTTGCCTCCGAGAGAC 510
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 707 ACAGTAGTTCTAACGATGGCACAAGATAATGATTCTGAATTTCCTTTGCCTCCTAGAGAT 766
Query 511 AAGTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCACCTTATAGA 570
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 767 AAGTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCATCTTATCGA 826
Query 571 TCTTCGCGGAACGGGGTTGTTAGGTATCACATGTCACAGTTCTACAATGGTCCTCCTCCA 630
|||||||||||| | ||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 827 TCTTCGCGGAACAGAGTT-TTCGGTATCACATGTCACAGCTCTACAATGGTCCTCCTCTT 885
Query 631 AGAAATAAACAAGAGTTGTTTAATCGATGCCATGCAT----AC--------ATT------ 672
||||||||||| ||||||||||||||||| ||||||| || |||
Sbjct 886 AGAAATAAACATGAGTTGTTTAATCGATGTCATGCATCTTTACGTTCTGTTATTGAAAGG 945
Query 673 ----T-GGAGTTTGGAAGAAAAAATGGAGGATTCTA-AGTGA-TTTTCCCAGATATGATA 725
| ||||||||||||||||||||||||||||| | ||| ||||| ||||||||||
Sbjct 946 AAAATTGGAGTTTGGAAGAAAAAATGGAGGATTCTTTA-TGAATTTTCT-AGATATGATA 1003
Query 726 TTGATGTTaaaaaaaaaGTGGTAATGGCTACAATGAGACTACATAATTTTATCAGAATTT 785
||||||| |||||| |||||||| | |||||||| |||||||||| ||||||||||| |
Sbjct 1004 TTGATGTCCAAAAAACAGTGGTAACGACTACAATGTGACTACATAACTTTATCAGAATGT 1063
Query 786 CGAATTATTTTGACGAAGA-TTTTGTTGAAGTGATGGGAGATACAAATATCAACAACGTA 844
|||||||||||||||| || |||||||||||| || ||||||||||||||||||||| ||
Sbjct 1064 CGAATTATTTTGACGA-GAATTTTGTTGAAGTAATAGGAGATACAAATATCAACAACATA 1122
Query 845 AATTCTGAGAATGATCTAGATGACATGGAGAGTGGTGGTATACCTGATGGAAATCATATG 904
|||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 1123 AATTCTGAGAATGATCTAGATGACC-GAAGAGAAGTGGTATACCTGATGGAAATCATATG 1181
Query 905 GCAAA-TATAAGAGAAAATATTGCAGATATGTTATGGGCAAATCAAA 950
||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1182 GCAAAATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAA 1228
Score = 237 bits (128), Expect = 2e-61
Identities = 147/156 (94%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 1 GAATGTCTCTTGATTGTTTTAGATCATTATGTGACAAAATGGAAACAAGTTATGGATTAC 60
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 225 GAATGTCTCTGGATTGTTTTAGATCATTATGTGACATAATGGAAACAAGTTATGGATTA- 283
Query 61 A-ACCTACATTGAATGTTAGCATTGAAGAGAGTGTCGCCATGTTTTTACGTATATGTGGA 119
| |||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 284 ATTCCTACAATGAATGTTAGTATTGAAGAGAGTGTTGCCATGTTTTTACGGATATGTGGA 343
Query 120 CACAATGAAGTTCAAAGAGATGTTGGGTTACGATTT 155
||||||||||||||||||||||||||||||||||||
Sbjct 344 CACAATGAAGTTCAAAGAGATGTTGGGTTACGATTT 379
> AT4G05526.1 | Symbols: | transposable element gene | chr4:2811266-2814539
FORWARD LENGTH=3274
Length=3274
Score = 401 bits (217), Expect = 5e-111
Identities = 535/679 (79%), Gaps = 59/679 (9%)
Strand=Plus/Plus
Query 159 GAAGTCCTTA-GAGCAAC-AAAGTTACTTA-CTTGTGATTATATCAAG-ACTCCAACAAG 214
||||| |||| | ||||| || |||| || | ||||||||||| || ||||||| ||
Sbjct 2420 GAAGTTCTTACG-GCAACTGAA-TTAC-TAGCATGTGATTATAT-TAGAACTCCAAAAAC 2475
Query 215 ACAAGAACTACGTCGAATTCCTGAAAAACTGCAAATGGATCGAAGATATTGGCCATATTT 274
||||| |||| ||||| || ||| | ||| ||| | ||||||||| |||| ||||||||
Sbjct 2476 TCAAGATCTACATCGAAATCTTGAGATACTTCAAGTAGATCGAAGAAATTGACCATATTT 2535
Query 275 TAGTGGATTTGTTGGAGCTATAGATGG-AGTTCATGTATGTGTTAAG--GTGAAGCCTGG 331
||||||||||||||||||||| ||||| | || |||| ||||| || ||||||||||
Sbjct 2536 TAGTGGATTTGTTGGAGCTATGGATGGGACTT-ATGTTTGTGTAAAAAAGTGAAGCCTG- 2593
Query 332 AACTACAAGGAATGTATTGGAATCGACACGATAGAA-CATCGTTT-AATATCATGGCAAT 389
|| |||||||||| ||||||||||||||||||| | |||| ||| || |||||||||||
Sbjct 2594 AATTACAAGGAATATATTGGAATCGACACGATA-ATGCATC-TTTGAACATCATGGCAAT 2651
Query 390 ATGTGATATAAATATGTTGTTTACATATGTTTGGAACGGAGCACCTG-GATCATGTCACG 448
||||||| | |||||||| || |||||| ||||||| |||||||| | ||||||||||||
Sbjct 2652 ATGTGATTTGAATATGTTCTTCACATATATTTGGAATGGAGCACC-GAGATCATGTCACG 2710
Query 449 ATACAGCAGTTCTAACGATGGCACAA-GATAATGATTCTGAATTTCCTTTGCCTCCGAGA 507
| | | | |||||||| ||||||||| || | ||||||||| ||||| ||||||||| |
Sbjct 2711 ACAAATCTGTTCTAACAATGGCACAACGA-AGTGATTCTGATTTTCCCTTGCCTCCGCTA 2769
Query 508 GACAAGTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCACCTTAT 567
|| ||||| || || ||||||||||| |||||||| ||| | |||||||| |||||
Sbjct 2770 GAAAAGTACTACGTCGTTGATTCTGGCTATCCAAACGGACATGAATTTTTGGCTCCTTAC 2829
Query 568 AGATCTTCGCGGAACGG-GG--TTGTTAGGTATCACATGTCACAGTTCTACAATGGTCCT 624
||||| || | | || || |||| |||||||| ||||| |||||||| ||| ||
Sbjct 2830 AGATCATCAAG-A--GGTGGAATTGTGAGGTATCATATGTCGCAGTTCTATTCTGGACCA 2886
Query 625 CCTCCAAGAAATAAACAAGAGTTGTTTAATCGATG-C------CAT---G--CA-TA--C 669
||||||||||||||| |||| || ||||||||||| | ||| | || || |
Sbjct 2887 CCTCCAAGAAATAAAAAAGAATTATTTAATCGATGTCATGTGTCATTACGTTCAGTAATC 2946
Query 670 -A------TTT-GGAGTTTGGAAGAAAAAATGGAGGATTCTAAGTGATTTTCCCA-GATA 720
| ||| |||||||||||||| ||||||| ||||| ||||||| |||| ||||
Sbjct 2947 GAGAGAACTTTTGGAGTTTGGAAGAAGAAATGGATAATTCTTTGTGATTT-CCCAAGATA 3005
Query 721 T-GATATTGATGTTaaaaaa-a-aaGTGGTAATGGCTACAATGAGACTACATAATTTTAT 777
| | |||| | || | |||| | || |||||||| |||||||| || |||| |||||| |
Sbjct 3006 TAG-TATTCAAGT-ACAAAAGAGAA-TGGTAATGACTACAATGGGATTACACAATTTTTT 3062
Query 778 CAGAATTTCGAATTATTTT 796
|| |||||| |||| ||||
Sbjct 3063 CAAAATTTCAAATT-TTTT 3080
> AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:11627225-11630679 FORWARD
LENGTH=3455
Length=3455
Score = 363 bits (196), Expect = 2e-99
Identities = 323/384 (84%), Gaps = 9/384 (2%)
Strand=Plus/Plus
Query 152 ATTTTTTGAAGTCCTTAGAGCAACAAAGTTACTTACTTGTGATTATATCAAGACTCCAAC 211
||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct 2668 ATTTTTTGAGGTCCTTACAGCGACTGAGTTACTTACTTGTGATTATATCAAGACTCCAAC 2727
Query 212 AAGACAAGAACTACGTCGAATTCCTGAAAAACTGCAAATGGATCGAAGATATTG-GCCAT 270
||||||||||||| ||||||| |||| || ||||| | | |||||||||| | |||||
Sbjct 2728 AAGACAAGAACTATACCGAATTCATGAACAATTGCAAGTAGCTCGAAGATAT-GAGCCAT 2786
Query 271 ATTTTAGTGGATTTGTTGGAGCTA-TAGATGGAGTTCATGTATGTGTTAAGGTGAAGCCT 329
|||||| ||||||| ||||||| | | |||||||||||||| || ||||||||||| ||
Sbjct 2787 ATTTTAATGGATTTATTGGAGCAAAT-GATGGAGTTCATGTCTGCGTTAAGGTGAAACCC 2845
Query 330 GGAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAAT 389
| | |||||||||| |||||| ||||||| | ||||||||| || || ||||||||||
Sbjct 2846 G-AGTTACAAGGAATATATTGGGATCGACATGGTAGAACATCATTCAACGTCATGGCAAT 2904
Query 390 ATGTGATATAAATATGTTGTTTACATATGTTTGGAACGGAGCACCTGGATCATGTCACGA 449
||||||| | ||||||||||| |||||||||||||| ||| ||| |||| | ||| ||
Sbjct 2905 ATGTGATTTGAATATGTTGTTCACATATGTTTGGAATTGAGTACCAAGATCTTATCATGA 2964
Query 450 TACAGCAGTTCTAACGATGGCACAAGATA-ATGATTCTGAATTTCCTTTGCCTCCGAGAG 508
|||||||||||| || || |||||||| | | ||||||||||||| ||||| ||| | ||
Sbjct 2965 TACAGCAGTTCTCACAATCGCACAAGACAGA-GATTCTGAATTTCTTTTGCTTCCAACAG 3023
Query 509 ACA-AGTATTATGTAGTTGATTCT 531
| | | |||||| |||||||||||
Sbjct 3024 AAATA-TATTATCTAGTTGATTCT 3046
> AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 40% identity and 8.4e-38 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:15803993-15806948 FORWARD
LENGTH=2956
Length=2956
Score = 359 bits (194), Expect = 3e-98
Identities = 382/472 (81%), Gaps = 15/472 (3%)
Strand=Plus/Plus
Query 189 TGTGATTATATCAAG-ACTCCAACAAGACAAGAACTACGTCGAATTCCTGAAAAACTGCA 247
||||||||||| || ||||| |||||||||||||| |||||||||||||| ||| ||
Sbjct 2441 TGTGATTATAT-TAGAACTCCGACAAGACAAGAACTTTATCGAATTCCTGAAAGACTTCA 2499
Query 248 AATGGATCGAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATAGAT-GGAGTTC 306
| | || ||||||||||||||||||||||||||||| ||||||||||| ||| ||| |
Sbjct 2500 AGTAGACCGAAGATATTGGCCATATTTTAGTGGATTCGTTGGAGCTATGGATGGGA-CAC 2558
Query 307 ATGTATGTGTTAAGGTGAAGCCTGGAACTACAAGGAATGTATTGGAATCGACACGATAGA 366
|||| || || || || |||||| || |||| ||||||||||||||||||||||||| |
Sbjct 2559 ATGTGTGCGTAAAAGTAAAGCCT-GAGTTACAGGGAATGTATTGGAATCGACACGATA-A 2616
Query 367 A-CATCGTTTAATATCATGGCAATATGTGATATAAATATGTTGTTTACATATGTTTGGAA 425
|||| || || |||||||||||||||||| | |||||||| || |||||| | |||||
Sbjct 2617 TGCATCCTTGAACATCATGGCAATATGTGATTTGAATATGTTATTCACATATATCTGGAA 2676
Query 426 CGGAGCACCTGGATCATGTCACGATACAGCAGTTCTAACGA-TGGCACAAGATAA-TGAT 483
|||| ||| || || || |||||||||| ||||| | | | |||||| | || ||||
Sbjct 2677 TGGAGTACCAGGTTCTTGCCACGATACAGTTGTTCTG-CAAATAGCACAACA-AAGTGAT 2734
Query 484 TCTGAATTTCCTTTGCCTCCGAGAGACAAGTATTATGTAGTTGATTCTGGGTATCCAAAT 543
|| || ||||||||||||||| ||| ||||||||| | ||||||||| | || |||||
Sbjct 2735 TCCGAGTTTCCTTTGCCTCCGTCAGAGAAGTATTATCTGGTTGATTCTTGCTACCCAAAC 2794
Query 544 AAACAAGGCTTTTTGGCACCTTATAGATCTTCGCGGAA-CGGGGTTGTTAGGTATCACAT 602
|||||||| ||| | || | ||||||||| || || || || | |||| || ||||| ||
Sbjct 2795 AAACAAGGATTTCTAGCTCTTTATAGATCGTCACGAAATCGAG-TTGTGAGATATCATAT 2853
Query 603 GTCACAGTTCTA-CAATGGTCCTCCTCCAAGAAATAAACAAGAGTTGTTTAA 653
||| || ||||| | |||||||||||| ||||| ||||| || |||||||
Sbjct 2854 GTCTCAATTCTATCC-TGGTCCTCCTCCTAGAAACAAACATGAACTGTTTAA 2904
> AT1G43723.1 | Symbols: | transposable element gene | chr1:16498989-16500296
REVERSE LENGTH=1308
Length=1308
Score = 228 bits (123), Expect = 9e-59
Identities = 378/494 (77%), Gaps = 46/494 (9%)
Strand=Plus/Plus
Query 189 TGTGATTATATCAAG-ACTCCAACAAGACAAGAACTACGTCGAATTCCTGAAAAACTGCA 247
||||||||||| || ||||||| || ||||| |||| |||||||||||||| ||| ||
Sbjct 502 TGTGATTATAT-TAGAACTCCAATAACTCAAGATCTACATCGAATTCCTGAAAGACTTCA 560
Query 248 AATGGATCGAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATAGATGG-AGTTC 306
| | |||| ||||||||||||||||||||||||||||||||||||||| ||||| | | |
Sbjct 561 AGTAGATCAAAGATATTGGCCATATTTTAGTGGATTTGTTGGAGCTATGGATGGGACT-C 619
Query 307 ATGTATGTGTTAAGGTGAAGCCTGGAACTACAAGGAATGTATTGGAATCGACACGATAGA 366
|||| ||||| || |||||||||| || |||||| |||||||| |||||||||||||| |
Sbjct 620 ATGTTTGTGTAAAAGTGAAGCCTG-AATTACAAGAAATGTATTTGAATCGACACGATA-A 677
Query 367 ACATCGTTTAATATCATGGCAATATGTGATATAAATATGTTGTTTACATATGTTTGGAAC 426
| | ||| | | | ||| ||| | ||| || |||||| ||| |||
Sbjct 678 ---T-G--------CAT--C--T-T-TGA-ATA--T--GTTATTCACATATATTTTGAAT 714
Query 427 GGAGCACCTGG-ATCATGTCACGATACAGCAGTTCTAACGATGGCACAA-GATAATGATT 484
| |||| ||| ||||| |||||| ||| | ||||| || ||| ||||| || | |||||
Sbjct 715 GAAGCAA-TGGGATCATATCACGACACAACTGTTCTTACAATGACACAATGA-AGTGATT 772
Query 485 CTGA-ATTTCCTTTGCCTCCGAGAGACAAGTATTATGTAGTTGATTCTGGGTATCCAAAT 543
|||| ||| |||| || |||| ||| ||||| || || ||||||||| | ||||||||
Sbjct 773 CTGATATTCCCTT-GCTTCCGCTAGAAAAGTACTACGTCGTTGATTCTTGCTATCCAAAC 831
Query 544 AAACAAGGCT-TTTTGGCACCTTATAGATCTTCGCG--GAACGGGGTTGTTAGGTATCAC 600
| |||| | ||||||| | ||| || || || | | | | || |||||||||||
Sbjct 832 AGACAAAA-TGTTTTGGCTCTTTACAGCTCATCAAGATGTA-GAAGT-GTTAGGTATCAT 888
Query 601 ATGTCACAGTTCTACAATGGTCCT-CCTCCAAGAAATAA-ACAAGAGTTGTTTAATCGAT 658
||||| |||||||| || | | ||| |||||||||| | || | ||||||||||||
Sbjct 889 ATGTCGCAGTTCTATTCCGGAC-TACCTACAAGAAATAAGA-AACAACTGTTTAATCGAT 946
Query 659 GCCATGCATACATT 672
| ||||||| ||||
Sbjct 947 GTCATGCAT-CATT 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5