BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494741
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42800.1 | Symbols: DFR, TT3, M318 | dihydroflavonol 4-reduc... 1720 0.0
> AT5G42800.1 | Symbols: DFR, TT3, M318 | dihydroflavonol 4-reductase
| chr5:17164141-17165918 REVERSE LENGTH=1358
Length=1358
Score = 1720 bits (931), Expect = 0.0
Identities = 1125/1218 (92%), Gaps = 15/1218 (1%)
Strand=Plus/Plus
Query 2 ACAAAAATGGTTAGTCAGACAGAGACCGTGTGTGTAACGGGCGCTTCGGGATTCATCGGT 61
||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 49 ACAAAAATGGTTAGTCAGAAAGAGACCGTGTGTGTAACCGGCGCTTCGGGTTTCATCGGT 108
Query 62 TCATGGCTAGTGATGCGATTACTCGAACGTGGTTACTTTGTTCGTGCCACTGTGCGCGAT 121
||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||
Sbjct 109 TCATGGCTAGTGATGCGATTACTAGAACGTGGTTACTTTGTTCGTGCCACCGTTCGAGAT 168
Query 122 CCTGGGAATTTGAAGAAAGTGCAACATCTTCTTGATTTGCCAAATGCCAAGACGCAACTC 181
|| || |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 169 CCCGGTAATTTGAAGAAAGTACAACATCTTCTTGATTTGCCAAACGCCAAGACGCTACTC 228
Query 182 ACTTTATGGAAGGCGGATTTATCTGAGGAAGGAAGCTACGATGACGCCATAACCGGATGC 241
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 229 ACTTTATGGAAGGCTGATTTATCTGAGGAAGGAAGCTACGATGATGCCATAAACGGATGT 288
Query 242 GACGGTGTTTTCCACGTGGCAACTCCCATGGATTTTGAATCAAAAGATCCTGAGAACGAA 301
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 289 GACGGTGTTTTCCACGTGGCAACACCCATGGATTTTGAATCAAAAGATCCTGAGAACGAA 348
Query 302 GTGATAAAACCGACAGTGAATGGAATGTTGGGGATTATGAAAGCATGTGTTAAGGCAAAG 361
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 349 GTGATAAAGCCGACAGTGAATGGAATGTTGGGGATAATGAAAGCATGTGTTAAGGCAAAG 408
Query 362 ACTGTACGAAGATTCATATTTACTTCATCTGCTGGAACTGTTAATGTAGAAGAACATCAG 421
|| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 409 ACCGTACGAAGATTCGTATTTACTTCATCTGCCGGAACCGTTAATGTAGAAGAACATCAG 468
Query 422 AAGAGTGTCTACGATGAAAACGATTGGAGCGATCTTGAGTTTATCATGTCCAAAAAGATG 481
|||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 469 AAGAATGTCTATGATGAAAATGATTGGAGTGATCTTGAGTTTATCATGTCCAAAAAGATG 528
Query 482 ACAGGATGGATGTATTTTGTGTCGAAAACATTAGCCGAGAAAGCAGCGTGGGATTACGCC 541
||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||| ||||
Sbjct 529 ACAGGATGGATGTATTTCGTGTCAAAAACGTTAGCGGAGAAAGCAGCGTGGGATTTCGCC 588
Query 542 GAGGAAAAAGGATTAGATTTCGTTAGTATTATTCCAACATTGGTGGTCGGTCCATTTATA 601
|| || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 589 GAAGAGAAAGGATTAGATTTCATTAGTATTATTCCAACATTGGTGGTCGGTCCATTCATC 648
Query 602 ACAACATCTATGCCGCCTAGCCTCATCACCGCGCTCTCTCCTATCACTCGGAACGAGGCA 661
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 649 ACAACGTCTATGCCGCCTAGCCTTATCACCGCGCTCTCTCCTATCACTCGGAACGAGGCG 708
Query 662 CATTACTCGATTATAAGACAAGGACAGTATGTGCATTTGGACGACTTATGCAACTCTCAT 721
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 709 CATTACTCGATCATAAGACAAGGACAGTATGTGCATTTGGACGACTTATGCAACGCTCAT 768
Query 722 ATCTTCTTATACGAACAAGAAGCTGCCAAAGGACGTTATATTTGTTCCTCTCACGATGCT 781
||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||
Sbjct 769 ATCTTCTTATACGAACAAGCAGCCGCCAAGGGACGTTATATTTGTTCCTCTCATGATGCA 828
Query 782 ACAATTCTTACTCTCTCCGAATTTCTCAGGCAAAAATACTCCGAATACAACGTGCCTTCA 841
|| ||||||||| ||||| |||||||||||| ||||||| ||||||| ||||| ||||||
Sbjct 829 ACCATTCTTACTATCTCCAAATTTCTCAGGCCAAAATACCCCGAATATAACGTACCTTCA 888
Query 842 ACGTTTGAAGGTGTTGATGATAATCTAAAGAGCATTGAGTTCAGTTCCAAGAAGCTGACT 901
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 889 ACGTTTGAAGGTGTTGATGAGAATCTAAAGAGCATTGAATTCAGTTCCAAGAAGCTGACG 948
Query 902 GACATGGGGTTTAACTTCAAGTATAGTCTCGAGGAAATGTTAATTGAGTCTATTGAGACA 961
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 949 GACATGGGGTTTAACTTCAAGTATAGTCTCGAGGAAATGTTTATTGAATCTATTGAGACA 1008
Query 962 TGTCGTCAAAAGGGTTTTCTCTCGGTTTCTTTACCGTACCAATCCATATCGGAGAACAAA 1021
||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||
Sbjct 1009 TGTCGTCAAAAGGGTTTTCTCCCGGTTTCATTATCGTACCAATCCATATCGGAGATCAA- 1067
Query 1022 GGTCCGACGAAGGATGACAATATTGA-GCTCAAAGCCGGAGATGGTTTAACCGATGGTAT 1080
| || ||| |||| || ||||| | ||||| |||||||||||||||||||||||||
Sbjct 1068 G-----ACTAAGAATGAAAACATTGACG-TCAAAACCGGAGATGGTTTAACCGATGGTAT 1121
Query 1081 GATGCCATGTAACAAGATAGAACCGGGGCTAACCGGCGAGAGAACCGATGCTCCCATGCC 1140
|| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1122 GAAGCCATGTAACAAGACAGAAACGGGGATAACCGGCGAGAGAACCGATGCTCCCATGCT 1181
Query 1141 AGCAGAACAGATGTGTGCTTAGAGAATTCAAAC-GTTATATTATATTGTCATATCGCTTT 1199
|||| ||||||||||||| |||| ||||||| | |||||||||| ||||||| |||
Sbjct 1182 AGCACAACAGATGTGTGCCTAGAAAATTCAA-CTGTTATATTAT-----CATATCGTTTT 1235
Query 1200 ACTATTGGAGGTGTCATT 1217
|||||||||||||| |||
Sbjct 1236 ACTATTGGAGGTGTGATT 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5