BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494743
Length=547
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42785.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 682 0.0
> AT5G42785.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17156908-17157779
REVERSE LENGTH=595
Length=595
Score = 682 bits (369), Expect = 0.0
Identities = 491/550 (89%), Gaps = 7/550 (1%)
Strand=Plus/Plus
Query 1 ACCATTTTTGTATTTTGTGGTTGA-TATTAAGGATGAAACAAACATCAAT-CTTTGGTCA 58
|||||||||||||||||||||| | |||||||||||||||||| ||| || ||||||||
Sbjct 1 ACCATTTTTGTATTTTGTGGTTTATTATTAAGGATGAAACAAAGATCGATGGTTTGGTCA 60
Query 59 GaaaaaaaaaaaTAAATTGTCGTTGAGAAATGAAAGGAAGGGCCTACGTAATGATCTTCT 118
| || |||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 G---AAGAAAATTAAATTGTTGTTGAGAAATGAAAGGAAGGGCCTACGTAATGATCTTCT 117
Query 119 TCTTCTGGGCTCTTCTCACAATAATCACCCCAATGCTTGTTAGCTGGTCTCAAGCTCTCA 178
||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct 118 TCTTCTGGGCTCTTCTCACCATTATCACCCCAATGCTTGTTAGCTGGTCTCAATCTCTCA 177
Query 179 AAAATCTTCCACCACTCTCTCATGATCAAGAACAAAAAATCAAAGACACCAGTCCAAGGC 238
|||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||
Sbjct 178 AAAATCTTCCACCACTCTCTAATGATCAAGAACAAAAAATCAAGGACTCTGGTCCAAGAA 237
Query 239 GAATGATGGGATATACAGAAGAAATGCATTTGGCACAAGAGTTTGTTAGTCACATAAAAG 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 238 GAATGATGGGATATTCAGAAGAAATGCATTTGGCACAAGAGTTTGTTAGTCACGTAGAAG 297
Query 299 AAGAGAAGTTGATGATGGTGCCGTCCATGGCGCCGACTCCTGAAGATAACCCTGTTACGC 358
|||||||||||||||||| |||||| |||||||| || ||||||||||||| ||||| ||
Sbjct 298 AAGAGAAGTTGATGATGGAGCCGTCAATGGCGCCAACGCCTGAAGATAACCATGTTATGC 357
Query 359 TTTCATTACCTTTCTTGCGaaaaaaaCAACAAGACGGATTAGTCGTTGAACGTGCACATC 418
|||| || ||| |||||| | |||||||||||| |||||||||| | |||| |||||||
Sbjct 358 CTTCACTATCTTCCTTGCGGATAAAACAACAAGAAGGATTAGTCGCTAAACGGGCACATC 417
Query 419 CCATTAGATTGCAATAAG-TTAAAAGAAATTCTTTCtttttttttttCTTTGTTTATTTT 477
|||| ||||||| || | ||||| ||| || ||||||| ||| ||||||| |||||||
Sbjct 418 CCATGAGATTGCGATGATCTTAAAGGAA-TTATTTCTTTCTTTCTTTCTTTTTTTATTTC 476
Query 478 GGCGATTATCTACATCATCTTCTTTGATCAAGTAAGTGTTCATAATGACTCCGATATAtt 537
|||||||||||| || || ||||||||||||||||||||||||||||||| |||||||
Sbjct 477 GGCGATTATCTAAATTGTCCTCTTTGATCAAGTAAGTGTTCATAATGACTCAGATATATA 536
Query 538 ttttttACTT 547
||||||||||
Sbjct 537 TTTTTTACTT 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26222224734
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5