BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494760
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42750.1 | Symbols: BKI1 | BRI1 kinase inhibitor 1 | chr5:17... 1991 0.0
> AT5G42750.1 | Symbols: BKI1 | BRI1 kinase inhibitor 1 | chr5:17142820-17144160
REVERSE LENGTH=1341
Length=1341
Score = 1991 bits (1078), Expect = 0.0
Identities = 1263/1346 (94%), Gaps = 37/1346 (3%)
Strand=Plus/Plus
Query 1 GAAAGTTTCAAGACCGAACCTAATAATAATATTATTATACCATCATATCCTTTGATCAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAGTTTCAAGACCGAACCTAATAATAATATTATTATACCATCATATCCTTTGATCAAC 60
Query 61 ACAAAAATCCctttt-ccttttttcgttttt-t-cttctttttctt-c-C-TCAATCATC 114
||||||||||||||| |||||||| |||||| | ||| |||||||| | | |||||||||
Sbjct 61 ACAAAAATCCCTTTTCCCTTTTTTGGTTTTTCTACTT-TTTTTCTTCCTCATCAATCATC 119
Query 115 ATGGAAACTAATCTACAACAGGTGAAGAACAGTTCTCAAACTTTTTCTGAAAAGCAAAAC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGGAAACTAATCTACAACAGGTGAAGAACAGTTCTCAAACTTTTTCTGAAAAGCAAAAC 179
Query 175 CCTAAACAAGAAG------CTTCACCAATATCATCCACTTGttcttctccttctcatgac 228
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCTAAACAAGAAGCTTCACCTTCACCAATATCATCCACTTGTTCTTCTCCTTCTCATGAC 239
Query 229 ttctcttttactatctctctccagcctctctcttcttcctcAAAACATATCAGCCCTACT 288
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 240 TTCTCTTTCACTATCTCTCTCCAGCCTCTCTCTTCTTCCTCAAAACACATCAGTCCTACT 299
Query 289 CTTAGAGGTTCAACCAAAACGACATCGTCTTATCAACAAACCGATCCTTTCGCCGTCGAC 348
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTAGAAGCCCATCCAAAACGACATCGTCTTATCAACAAACCGATCCTTTCGCCGTCGAC 359
Query 349 TTATCCCCGGCCGATGAGAtcttcttccacggccatcttcttcctctccacctcctctct 408
|||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 360 TTATCCCCCGCCGATGAAATCTTCTTCCACGGCCACCTTCTTCCTCTCCATCTCCTCTCT 419
Query 409 cacctccctgtctctcctcGAACTTCCACCA-GTTCTTATAATGACGGATTTACCCTCCC 467
||||||||||||||||| |||||||||| || | || |||||||||||||||||||||||
Sbjct 420 CACCTCCCTGTCTCTCCCCGAACTTCCA-CAGGCTCGTATAATGACGGATTTACCCTCCC 478
Query 468 CGTCAAAGATATATTACCTGACCAGCCCAC--A-AACAACAACAACACTGAAAACGCTAT 524
|||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 479 CGTCAAAGATATATTACCCGACCAGCCCACAAACAACAACAACAACACTGAAAACGCTAT 538
Query 525 CA-CAACCATCAGTACGGAGGCAAAGAACGACAACACCAG-CGACAAAGCAGAGAGCGAG 582
|| ||| ||| ||||| ||||||||| ||||||||||| | |||||||||||| |||||
Sbjct 539 CACCAA-CATAAGTACCGAGGCAAAGGACGACAACACC-GAAGACAAAGCAGAGGGCGAG 596
Query 583 AATCTTTCTCGGGTAAAAACCAAACCCATGAAGTCATTTTCTCTCTTTGGTTTATCAAAA 642
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 597 -A----T-TCGGGTAAAAACCAAACCCATTAAGTCATTTTCTCTCTTTGGTTTATCAAAA 650
Query 643 TGGAGAAAGAGTTTTGAAAGCAACGAGCGAGAACAAGAACAGCAGCAACAGAAGATCAAG 702
||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 651 TGGAGAAAGGGTTTTGAAAGCAACGAGCGAGAACAAGAACAACAACAACAGAAGATCAAG 710
Query 703 AAACCTATAAGCTTAGACCTAAGTCACGCGGTCAAGAAGTACATAAGGATGTTGTTTCAG 762
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 711 AAACCTATGAGCTTAGACCTAAGTCACGCCGTCAAGAAGTACATAAGGATGTTGTTTCAG 770
Query 763 AAAAGAGGAAACGGCACGCAGTTTAGAAACAGAAGACAGACTTCTTCTTATTCTTTCTCT 822
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 771 AAAAGAGGAAACGGCACGCAGTTTTGGAACAGAAGACAGACTTCTTCTTACTCTTTCTCT 830
Query 823 TCCTCTCTTATGGGTCCAAACGGAAACAGCAAAACAATGATTAATGGATCATACAACAAG 882
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 831 TCCTCTCTTATGGGTCCAAACGGAAACAGCAAAACAATGATTAATGGATCTTACAACAAG 890
Query 883 AGAGATCTGATTAGAGGAAGGAGAGGTGAGTTGTTCTCGGCTCCGGCGTCGATGAGAACA 942
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 891 AGAGATCTCATAAGAGGAAGGAGAGGTGAATTGTTCTCGGCTCCGGCGTCGATGAGAACA 950
Query 943 TCTCCGACTAATAGTGGACATCTCCGTGTGTCCACGGCCGGACTATCGTCAAGCTCGGGG 1002
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 951 TCTCCGACTAATAGTGGCCATCTTCGTGTGTCTACGGCCGGACTATCGTCAAGCTCGGGG 1010
Query 1003 TCCACGTCATCATCGTCTAGTGATAGTACCATGGAAGAGTTACAAGCTGCGATACAAGCG 1062
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1011 TCCACGTCATCATCGTCAAGTGATAGTACCATGGAAGAGTTACAAGCTGCGATTCAAGCA 1070
Query 1063 GCCATTGCTCATTGCAAGAACTCAAGCGCCGTTGATCGTGATGATAAGGTTAAGGATTCT 1122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GCTATTGCTCATTGCAAGAACTCAAGCGCCGTTGATCGTGATGATAAGGTTAAGGATTCT 1130
Query 1123 TGATTTGGTTTTTTCTTTTGTCCTTAATCTGTTGTTCTTTCTTGTCGGAAAGaaaaaaaa 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1131 TGATTTGGTTTTTTCTTTTGTCCTTAATCTGTTGTTCTTTCTTGTCGGAAAGATAAAAA- 1189
Query 1183 gaaaaaaaCAAA-GTGTTAGTGTGTGACGTGGAATTCAAGAATTACAGTAGTGGTAATTA 1241
||||||| |||| |||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1190 GAAAAAA-CAAAAGTGTTAGTGTGTGACGTGGATTTTAAGAATTACAGTAGAGGTAATTA 1248
Query 1242 TTTATTTCGTGTATAGTATAGAAAAAGGAGTTACTGTTCCTATACTATGTGTCCCCATAA 1301
|||||||||||||||| | | |||| ||||||| ||||||||||||||||||||||||||
Sbjct 1249 TTTATTTCGTGTATAG-A-A-AAAA-GGAGTTATTGTTCCTATACTATGTGTCCCCATAA 1304
Query 1302 TTCATTTATAATAAT-AAAA-GAGAT 1325
||||||||||||||| |||| |||||
Sbjct 1305 TTCATTTATAATAATGAAAAAGAGAT 1330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210507955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5