BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494761
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42740.1 | Symbols: | Sugar isomerase (SIS) family protein ... 3157 0.0
AT5G32072.1 | Symbols: | pseudogene of Glucose-6-phosphate iso... 193 7e-48
> AT5G42740.1 | Symbols: | Sugar isomerase (SIS) family protein
| chr5:17135692-17140892 FORWARD LENGTH=2157
Length=2157
Score = 3157 bits (1709), Expect = 0.0
Identities = 1938/2045 (95%), Gaps = 29/2045 (1%)
Strand=Plus/Plus
Query 1 GAACCTTCCGTCAACACGTGTCATACCCTCAGCTCTCACA-----CTTCCCTATCGcttt 55
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 69 GAACCTTCCGTCAACACGTGTCATACCCTCAGCTCTCACACGCTTCTTCCCTATCG---- 124
Query 56 ttttcttttcctctctctcaatagctttcttcttctcacaattccagaatcttcttcttc 115
| ||| |||||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct 125 GAAAC-TTT-CTCTCT-TC--TAGCTTTCTTCTTCTCACAATTCCGGAATCTTCTTCTTC 179
Query 116 acctcatcttcGAAGATCTTCAGTAATGGCGTCATCAACTGCTTTGATTAGTGATACCGA 175
|||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 180 ACCTCATCTTCGAAGACCTTCAGTAATGGCGTCATCAACCGCTTTGATTTGTGATACCGA 239
Query 176 AGCGTGGAAGGATTTGAAGGGACATGTTGAAGATATTAAGAAGACTCATTTGCGTGATTT 235
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 AGCGTGGAAGGATTTGAAGGGACATGTAGAAGATATTAAGAAGACTCATTTGCGTGATTT 299
Query 236 GATGACTGATGCTAATAGATGCCAGTCCATGATGATGGAATTTGATGGGTTGCTGTTGGA 295
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 GATGAGTGATGCTAATAGATGCCAGTCCATGATGATGGAGTTTGATGGGTTGCTGTTGGA 359
Query 296 TTATTCTCGACAGCGTGCAACTGTAGAGACAGTGGACAAGCTTTTGAACTTGGCAAAGGC 355
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 360 TTATTCTCGACAGCGTGCAACTGTTGAGACAATGGACAAGCTTTTGAACTTGGCAAAGGC 419
Query 356 TGCACAGTTGACTGAGAAGATCAGCCGCATGTTCAACGGGGAGCATATTAACAGTACGGA 415
| | || ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 420 TTCTCAATTGACAGAGAAGATCAGCCGCATGTTCAATGGGGAGCATATTAACAGTACAGA 479
Query 416 GAACAGGTCAGTTCTTCATGTTGCGCTCCGTGCTCCAAAGGATGCAGTTATCAAGGCTGA 475
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAACAGATCAGTTCTTCATGTTGCGCTCCGTGCTCCAAAGGATGCAGTTATCAAGGCTGA 539
Query 476 TGGAAAGAATGTGGTTCCAGAAGTGTGGAACGTTCTAGATAAGATCAAGGAATTTTCTGA 535
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGAATGAATGTGGTTCCAGAAGTGTGGAACGTTCTAGATAAGATCAAGGAATTTTCTGA 599
Query 536 GAAAATTCGCTCTGGTTCATGGGTAGGAGCCACTGGCAAACCGCTGAAAGATGTCATTGC 595
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 CAAAATTCGCTCTGGTTCATGGGTTGGAGCCACTGGCAAACCGCTGAAAGATGTCATTGC 659
Query 596 GATTGGTATTGGTGGTAGCTTCTTAGGTCCACTGTTTGTACACACGGCTCTCCAAACAGA 655
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 GATTGGTATTGGTGGTAGCTTCTTAGGTCCACTGTTTGTCCACACGGCTCTCCAAACAGA 719
Query 656 CCCTGAAGCTCTAGAGTCTGCTAAAGGACGTCAGCTGCGATTCCTTGCGAATATTGATCC 715
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 720 TCCTGAAGCTCTAGAGTCTGCTAAAGGACGCCAGCTGCGATTTCTTGCAAATATTGATCC 779
Query 716 TGTTGATGTTGCTAGAAATATCA-TCGGACTAAATCCAGAAACTACTCTAGTTGTGGTGG 774
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 780 TGTTGATGTTGCTAGAAATATCAGT-GGACTAAATCCAGAAACTACTCTAGTTGTGGTGG 838
Query 775 TCTCAAAAACATTTACAACAGCAGAGACAATG-TTGAACGCTAGGACATTGAGGGAATGG 833
|||| ||||| ||||||||||| || |||||| || ||||| || |||||||||||||||
Sbjct 839 TCTCGAAAACGTTTACAACAGCTGAAACAATGCTT-AACGCCAGAACATTGAGGGAATGG 897
Query 834 ATAACAGCTGCTCTCGGGGCTTCAGCTGTTGCAAAACACATGGTTGCTGTCAGCACTAAT 893
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 ATAACAGCTGCTCTTGGGGCTTCAGCTGTTGCAAAACATATGGTTGCTGTCAGCACTAAT 957
Query 894 CTTGCGTTAGTGGAGAAGTTCGGAATTGACCCGAACAATGCATTTGCATTTTGGGACTGG 953
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 958 CTTGCGTTAGTAGAGAAGTTTGGTATTGACCCGAACAATGCATTTGCATTTTGGGACTGG 1017
Query 954 GTTGGTGGAAGGTACAGTGTTTGCAGTGCGGTTGGAGTCTTACCTTTGTCTCTGCAGTAT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTTGGTGGAAGGTACAGTGTTTGCAGTGCGGTTGGAGTCTTACCTTTGTCTCTGCAGTAT 1077
Query 1014 GGCTTCTCCGTGGTTGAGAAGTTTTTGAAGGGAGCTTCAAGCATTGATCAGCATTTCCAG 1073
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGCTTCTCCATGGTTGAGAAGTTTTTGAAGGGAGCTTCAAGCATTGATCAGCATTTCCAG 1137
Query 1074 TCCACACCGATCGAGAAGAATATACCTGTACTTTTAGGGTTGTTGAGTGTATGGAATGTA 1133
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1138 TCCACACCGTTCGAGAAGAATATACCTGTGCTTTTAGGGTTGTTGAGTGTATGGAATGTA 1197
Query 1134 TCATTTCTTGGATACCCTGCCAGGGCCATCTTACCTTACTCCCAAGCCCTTGAGAAATTT 1193
|||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 1198 TCATTTCTTGGATATCCTGCTAGGGCCATCTTACCTTATTCGCAAGCCCTTGAGAAATTT 1257
Query 1194 GCTCCACACATTCAACAGGTTAGTATGGAGAGTAATGGAAAGGGAGTCTCAATTGATGGT 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GCTCCACACATTCAACAGGTTAGTATGGAGAGTAATGGAAAGGGAGTCTCAATTGATGGT 1317
Query 1254 CTACCTCTCCCGTTCGAGACTGGTGAGATTGATTTTGGTGAACCTGGTACAAATGGTCAA 1313
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 CTACCTCTCCCGTTCGAGACTGGTGAGATTGATTTTGGTGAACCTGGAACAAATGGTCAA 1377
Query 1314 CACAGCTTTTACCAACTAATTCACCAGGGACGCGTAATCCCTTGTGATTTCATTGGCATT 1373
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CACAGCTTTTACCAACTCATTCACCAGGGACGCGTAATCCCTTGTGATTTCATTGGCATT 1437
Query 1374 GTGAAGAGTCAGCAACCTGTGTATCTGAAGGGAGAGGTGGTCAGTAACCACGACGAGCTC 1433
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1438 GTGAAGAGTCAGCAACCTGTGTACCTTAAGGGAGAGGTGGTCAGTAACCACGACGAGCTC 1497
Query 1434 ATGTCCAACTTTTTTGCCCAGCCTGATGCTCTTGCTTATGGAAAAACACCTGAACAGCTG 1493
||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1498 ATGTCAAACTTTTTTGCACAGCCTGATGCTCTTGCATATGGAAAAACTCCTGAACAGCTG 1557
Query 1494 CAGAAAGAGAATGTTTCAGAAAATCTCATTCCCCACAAGACATTCTCCGGAAATCGACCT 1553
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1558 CAGAAAGAGAATGTTTCAGAAAATCTCATTCCCCATAAGACATTCTCTGGAAATCGACCT 1617
Query 1554 TCTCTTAGCCTTCTACTTCCAGAATTGACTGCTTACAATGTTGGCCAGTTATTGGCAATC 1613
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1618 TCTCTTAGCCTTCTACTTCCAGAATTGACTGCTTACAATGTTGGCCAGTTGTTGGCTATC 1677
Query 1614 TATGAACACAGAGTAGCAGTTCAAGGCTTTGTGTGGGGTATCAATTCGTTTGACCAATGG 1673
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1678 TATGAACACAGAGTAGCAGTTCAAGGCTTTGTGTGGGGTATCAATTCGTTTGACCAGTGG 1737
Query 1674 GGAGTTGAGCTAGGAAAAGTTCTTGCTACTCATGTGAGGAAGCAGCTTCATTCATCACGC 1733
|| |||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||
Sbjct 1738 GGCGTTGAGCTAGGAAAAGTTCTGGCTACTCAGGTCAGGAAACAGCTTCATTCATCACGC 1797
Query 1734 ACTCAAGGCACCACTCTCGAGGGATTCAATTACAGTACCACCACACTTTTGAAACGATAT 1793
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 ACTCAAGGAACCGCTCCCGAGGGATTCAATTACAGTACCACCACACTTTTGAAACGATAT 1857
Query 1794 CTCGAGACAAGTTCCGAGCCACAGATGTGATGAACAAGCCCCAGTTTCTC-C-TTC-ACC 1850
|||||||||||||||||||| |||||||||||| ||||||| |||||||| | ||| |||
Sbjct 1858 CTCGAGACAAGTTCCGAGCCCCAGATGTGATGACCAAGCCCAAGTTTCTCTCCTTCGACC 1917
Query 1851 CAAACGTGAACCATTCCCGCATTTTGCACTCCT-GTTCTTCTCTTTTTCCACTGTCCCTA 1909
|||||||||||||| ||||||| ||| ||| |||||||| |||||| |||||||||
Sbjct 1918 -AAACGTGAACCATTTGAGCATTTTTCAC-CCTTGTTCTTCTTTTTTTC-ACTGTCCCTG 1974
Query 1910 ATCAGAGTATACTTTATCGGCACTCATAAATTATCTAAAAATGGGTACTAATAAATCCAA 1969
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1975 ATCAGAGTATACTTTATCGGCACTCATAAATTATCTAAAAATGGGTACTAATAA-TCCAA 2033
Query 1970 ACCCCATAAAATCAGAATTGGGAGCATAATATCAGAC-AGCtttttttCT--AATTTATA 2026
|||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 2034 ACCCCATAAAATCAGAATTGGGAGCATAATATCAGAGGAGCTTTTTTTCTCTAAATTATA 2093
Query 2027 TGCAC 2031
|||||
Sbjct 2094 TGCAC 2098
> AT5G32072.1 | Symbols: | pseudogene of Glucose-6-phosphate isomerase
| chr5:11450044-11450532 REVERSE LENGTH=257
Length=257
Score = 193 bits (104), Expect = 7e-48
Identities = 125/135 (93%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 561 GGAGCCACTGGCAAACCGCTGAAAGATGTCATTGCGATTGGTATTGGTGGTAGCTTCTTA 620
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GGAGCAATTGGCAAACCGCTGAAAGATGTCATTGCGATTGGTATTGGTGGTAGCTTCTTA 176
Query 621 GGTCCACTGTTTGTACACACGGCTCTCCAAACAGACCCTGAAGCTCTAGAGTCTGCTAAA 680
|||||||| ||||| ||||||||||||||||| || ||| |||||||||||||| |||||
Sbjct 177 GGTCCACTATTTGTCCACACGGCTCTCCAAACTGATCCTCAAGCTCTAGAGTCTACTAAA 236
Query 681 GGACGTC-AGCTGCG 694
||||| | |||||||
Sbjct 237 GGACG-CGAGCTGCG 250
Score = 161 bits (87), Expect = 2e-38
Identities = 101/108 (94%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 402 ATTAACAGTACGGAGAACAGGTCAGTTCTTCATGTTGCGCTCCGTGCTCCAAAGGATGCA 461
||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 9 ATTAACAGTACAGAGAATAGATCAGTTCTTCATGTTGCTCTCCGTGCTCCAAAGGATGCA 68
Query 462 GTTATCAAGGCTGATGGAAAGAATGTGGTTCCAGAAGTGTGGAACGTT 509
|||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 69 CTTATCAAGCCTGATGGAAAGAATGTGGTTCCAGAAGTTTGGAACGTT 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100652092725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5