BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494762
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42720.1 | Symbols: | Glycosyl hydrolase family 17 protein ... 2464 0.0
AT4G34480.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 174 2e-42
> AT5G42720.1 | Symbols: | Glycosyl hydrolase family 17 protein
| chr5:17130186-17132843 FORWARD LENGTH=1746
Length=1746
Score = 2464 bits (1334), Expect = 0.0
Identities = 1591/1713 (93%), Gaps = 26/1713 (2%)
Strand=Plus/Plus
Query 1 TAGTCTTCGTTTACTAATTCTCTCTTACAAATCCAAACAAAAAGGAACTGTGAACATAAA 60
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 24 TAGTCTTCGTTTACTAATTCTCTCTCACAAATCCAAACAAAAAGGAACTGTGTACTTAAA 83
Query 61 TCCTGTAATGACAATTTCAAATTAACCTACTAAACAAGAACTATGAAATACTAGGATAAT 120
|||||||||||||||||| | | || ||||||||||||||||| |||||||||||||||
Sbjct 84 TCCTGTAATGACAATTTC--A-T-ACATACTAAACAAGAACTATTAAATACTAGGATAAT 139
Query 121 ACATACTTAAAGAAATAAAAACTCTTCATGTAGTCGTGTTTTTTATTTTACCATTTAAAA 180
|||||||| ||||||||| ||||||||||||||||||| | | |||||| ||||||||
Sbjct 140 ACATACTTGAAGAAATAACAACTCTTCATGTAGTCGTG---TCT-TTTTACAATTTAAAA 195
Query 181 TTTGAAAAGA-AAAAGTTACATTTACCTTTACAACGCCGGTCGTTTTCTACACCTATATC 239
|||||||| | ||||||||||||||||||||||||| ||||||||||| || | | |
Sbjct 196 TTTGAAAA-ATAAAAGTTACATTTACCTTTACAACGTCGGTCGTTTTC--CA-C---A-C 247
Query 240 TATAGATTACCCACTTCTGCTCGATAGTTTTCTCTATAACATagagacaaaagaagagag 299
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 248 AATAGATTACCCACTTCTACTCGATAGTTTTCTCTATAATATAGAGACAAAAGAAGAGAG 307
Query 300 aatttaaactgaaaagaacaaagaaggaaaaacagagCAGCCATGATAGCTTCTGTTTAT 359
||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 308 CATTTAAATTCTAAAGAACAAAAAAGGAAAAACAGAGCAGCCATGAGAGCTTCTGTTTAT 367
Query 360 TCATTGATCCTTCTCTTCTTCTCGTGTTTAGTACATCTATCAAAGTCTCAACCGTTCCTC 419
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 368 TCATTGATCCTACTCTTCTTCTCGTGTTTACTACATCTATCAAAGTCTCAACCGTTCCTC 427
Query 420 GGGA-TAAACTACGGACTAACCGCAGACAATCTTCCACCTCCGTCAGCGAGTGCAAAGCT 478
||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 428 -GGAGTAAACTACGGCCTAACCGCCGACAATCTTCCACCTCCGTCAGCGAGTGCAAAGCT 486
Query 479 CCTCCAGTCCACAACTTTCCAAAAAGTCCGTCTTTACGGATCCGACCCGGCTGTAATCAA 538
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CCTTCAATCCACAACTTTCCAAAAAGTCCGTCTTTACGGATCCGACCCGGCTGTAATCAA 546
Query 539 GGCCCTTGCAAACACGGGGATTGAGATCGTTATTGGGGCATCGAATGGCGATGTACCCGG 598
|||||| |||||||||||||| |||||||| || ||||| || || ||||||||||||||
Sbjct 547 GGCCCTAGCAAACACGGGGATCGAGATCGTCATCGGGGCGTCTAACGGCGATGTACCCGG 606
Query 599 TTTAGCATCCGACCCGAGTTTCGCTCGAAGCTGGGTCCAAACCAACGTGGTACCTTACTA 658
| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 607 TCTAGCATCGGACCCGAGTTTCGCCCGAAGCTGGGTCGAAACCAACGTGGTACCTTATTA 666
Query 659 TCCGGCGAGCAAGATTGTTCTCATAGCCGTGGGGAACGAGATCACAACATTTGGCGACAA 718
||| |||||||||||||||||||| |||||||| || ||||||||| |||| ||||||||
Sbjct 667 TCCAGCGAGCAAGATTGTTCTCATTGCCGTGGGAAATGAGATCACATCATTCGGCGACAA 726
Query 719 CAATCTCATGTCGCAGCTTTTGCCGGCAATGAAAAATGTCCAAAGTGCTCTTGAGGCGGT 778
|| |||||||||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct 727 CAGTCTCATGTCGCAGCTTTTGCCGGCGATGAAAAATGTCCAAACTGCCCTCGAGGCGGC 786
Query 779 GTCTCTTGGTGGCGGGAAAATTAAGGTCTCGACGGTACATGTAATGTCAGTTCTGGCCGG 838
||||||||||||||||||||| || |||||||| ||||| ||||||| ||||| |||||
Sbjct 787 GTCTCTTGGTGGCGGGAAAATCAAAGTCTCGACAGTACACATAATGTCGGTTCTAGCCGG 846
Query 839 GTCAGACCCTCCTTCGGCCGCGGTATTTAAACCGGAGCATGCTGATATATTGAAAGGATT 898
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 847 GTCAGACCCTCCTTCGACCGCGGTATTTAAACCGGAGCATGCTGATATATTGAAGGGATT 906
Query 899 GCTAGAGTTTAATAGTGAAACCGGGTCGCCTTTCGCGGTTAATCCGTACCCGTTTTTCGC 958
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 907 GCTAGAGTTTAATAGTGAAACCGGGTCGCCTTTCGCGGTTAACCCCTACCCGTTTTTCGC 966
Query 959 TTACCAGGATGACCGGAGACCCGAAACGTTGGCCTATTGCTTGTTTCA-GCCTAATCCTG 1017
|||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 967 TTACCAAGATGACCGGAGACCCGAAACGTTGGCCTATTGCTTGTTTCAGGCC-AATCCTG 1025
Query 1018 GCCGTGTCGACCCCAAGAGCAACCTCAAGTATATGAACATGTTCGATGCTCAGGTTGATG 1077
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GCCGTGTCGACCCCAACAGCAACCTCAAGTATATGAACATGTTCGATGCTCAGGTTGATG 1085
Query 1078 CGGTGTATTCAGCTTTGAACTCGATGGGGTTCAAAGATGTAGAGATAGTGGTCGCTGAGA 1137
|||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 1086 CGGTGTATTCAGCTTTGAACTCGATGGGGTTCAAGGACGTAGAGATAATGGTCGCTGAGA 1145
Query 1138 CTGGGTGGCCGTACAAGGGCGACCCAGAGGAGGCTGGTGCAACAGTTGAGAACGCTAGAG 1197
|||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1146 CTGGATGGCCATACAAGGGAGACCCGGAGGAGGCTGGTGCAACAGTTGAGAACGCTAGAG 1205
Query 1198 CTTACAATAAAAACCTCATTGCTCATTTGAAATCTGGGTCCGGGACGCCACTGATGCCCG 1257
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1206 CTTACAATAAAAATCTCATTGCTCATTTAAAATCTGGGTCCGGGACGCCACTTATGCCCG 1265
Query 1258 GGAGAGTGATCGATACATACTTGTTCGCATTGTACGACGAGAATCTCAAGCCCGGGAAAG 1317
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GGAGAGTGATCGACACATACTTGTTCGCATTGTACGACGAGAATCTCAAGCCCGGGAAAG 1325
Query 1318 GTTCTGAACGAGCCTTCGGTTTGTTTAGACCTGATCTGACCATGACTTACGATATAGGGC 1377
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1326 GTTCTGAACGAGCCTTCGGTTTGTTTAGACCTGATCTAACCATGACTTATGATATCGGGC 1385
Query 1378 TCACCAAGACTACCAAT-A-A-CCAAACTTCCATGGCTCCAGTGTCGCCAACAACGCCAC 1434
||||||||||||||||| | | ||||||||||||||||||| |||| ||||||| |||||
Sbjct 1386 TCACCAAGACTACCAATTATAACCAAACTTCCATGGCTCCATTGTCACCAACAAGGCCAC 1445
Query 1435 GTCTGCCACCAGCCGCGGCCCCGACAAGGCAAACCTTACCTGCTCCTCCGCAGATGATTC 1494
|||| |||||||||||||||||||| || ||||| |||||| ||||||||||||||||||
Sbjct 1446 GTCTTCCACCAGCCGCGGCCCCGACGAGACAAACATTACCTTCTCCTCCGCAGATGATTC 1505
Query 1495 TCCCTTCACCAGTTACTCCCTCCGACAAAAACTCTGGACAAACCGATGTTCACAATTCCA 1554
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1506 TTCCTTCACCAGTTACTCCCTCCGACAAAAACTCTGGGCAAACCGATGTTCACAATTCCA 1565
Query 1555 CTCCACGCTCTGCCTCTCTGGCTCACATATGCCGTTCTCTCTCTATTTCAACATCGATGT 1614
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1566 CTCCGCGCTCTGCCTCTCTGGCTCACATATGCCGCTCTCTCTCTATTTCGGCATCGATGT 1625
Query 1615 TGTTTCTCTCCGTTCTGTATGCATTGATCATATAGTTGTGAAATCTTCT-CATCGATCTT 1673
| ||| |||||||| |||||||||||||||||| ||||| |||||| || ||||||||||
Sbjct 1626 TCTTTGTCTCCGTTTTGTATGCATTGATCATATTGTTGTAAAATCT-CTTCATCGATCTT 1684
Query 1674 ATATTATGTCTCTTACTAATTTAAACTTAACTA 1706
||||||||||||||||||||||||||| |||||
Sbjct 1685 ATATTATGTCTCTTACTAATTTAAACTAAACTA 1717
> AT4G34480.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr4:16480934-16483995 REVERSE LENGTH=1735
Length=1735
Score = 174 bits (94), Expect = 2e-42
Identities = 473/648 (73%), Gaps = 57/648 (9%)
Strand=Plus/Plus
Query 741 CCGGCAATGAAAAATGTCCAAAGTGCTCTTGAGGCGGTGTCTCTTGGTGGCGGGAAAATT 800
||||| ||| |||||||||||| || |||||||||||||||| | |||||||||||
Sbjct 407 CCGGCGATGCAAAATGTCCAAAAAGCCCTTGAGGCGGTGTCTC-T--CGGCGGGAAAATC 463
Query 801 AAGGTCTCGACGGTACATGT-AATGTCAGTTCT-GGCCGGGTCAGACCCTCCTTCGGCCG 858
|||||||||||||| | | ||| | || || || | |||||||| || || | |
Sbjct 464 AAGGTCTCGACGGT-GAACTCGATGACGGTGCTCGG-TAGTTCAGACCCGCCATC-G-AG 519
Query 859 CGG-T-ATTT-AAACCGGAGCATGCTGATATATTGAAA-GG-A--TTGCTAGAGTTTAAT 911
||| | |||| |||| || | | || ||| || | |||| | | ||| |
Sbjct 520 CGGTTCATTTGCGGCCGG-TTAT-CAAACCGGTTTAAAGGGAATTTTGC-A-A-TTT-CT 573
Query 912 -AGTGAAACCGGGTCGCCTTTCGCGGTTAATCCGTACCCGTTTTTCGCTTACC-AGGATG 969
|| || || || |||||||| || |||| ||||||||||| ||||| |||| | | ||
Sbjct 574 AAGCGACACTGGTTCGCCTTTTGCTATTAACCCGTACCCGTTCTTCGCGTACCAAAG-TG 632
Query 970 ACCGGAGACCCGAAACGTTGGCCTATTGCT-TGTTTCAGCCTAATC-CTGGCCGTGTCGA 1027
||| ||||||||||||| |||| | ||| | | ||| ||||||| | | || || |||||
Sbjct 633 ACCCGAGACCCGAAACGCTGGCGTTTTG-TCTCTTTGAGCCTAA-CGCCGGACGAGTCGA 690
Query 1028 CCCCAAGA--GCAACCTCAAGTATATGAACATGTTCGATGCTCAGGTTGATGCGGTGT-A 1084
| |||| | | || |||| || | |||||||||||||||||||||||||||||| | |
Sbjct 691 CTCCAAAACCGGAA--TCAAATACACGAACATGTTCGATGCTCAGGTTGATGCGGT-TCA 747
Query 1085 TTCAGCTTTGAACTCGATGGGGTTC-A-AAGATGTAGAGATAGTGGTCGCTGAGACTGGG 1142
|| |||||||| |||||||| ||| | ||| || ||||| ||||| || || || ||
Sbjct 748 CTCGGCTTTGAAATCGATGGGATTCGAGAAGGTG--GAGATTGTGGTGGCGGAAACAGGT 805
Query 1143 TGGCCGTACAAG-GGCGACCC-AGAGGAGGCTGGTGCAA-CAGTTGAGAACGCTAGAGCT 1199
||| ||| |||| || ||| | | | |||| ||| |||| | || || ||||| | |||
Sbjct 806 TGGGCGT-CAAGAGGGGACGCTA-ACGAGGTTGGAGCAAGC-GTGGATAACGCCAAAGCG 862
Query 1200 TACAATAAAAACCTCATTGCTCATTTGAAA-TCTG-GGTCCGGGACGCCACTGATGCCCG 1257
||||| |||||| || |||||| | || ||| ||| || || || || ||||| |
Sbjct 863 TACAACGGAAACCTAATAGCTCATCT-AAGGTCTATGGTT-GGCACACCTCTCATGCCTG 920
Query 1258 GGAGAG-TGATCGATACATAC-TTGTTCGCATTGTACGACGAGAATCTCAAGCCCGGGAA 1315
| | | || | || || ||| || |||||| |||| || |||||||| ||||| || |
Sbjct 921 GAAAACCTGTT-GACACTTACATT-TTCGCACTGTATGATGAGAATCTAAAGCCTGG-AC 977
Query 1316 -AGGTTCTGAACGAGCCTTCGGTTTGTTT-AGACCTGATCTGACCATG 1361
| ||| ||||| || ||||| | ||| | | ||||||| |||||
Sbjct 978 CATCTTCAGAACGGGCTTTCGGGCT-TTTCAAAACTGATCTTTCCATG 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84336915600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5