BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494763
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42710.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 3421 0.0
> AT5G42710.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:17125578-17128847
FORWARD LENGTH=2575
Length=2575
Score = 3421 bits (1852), Expect = 0.0
Identities = 2255/2445 (92%), Gaps = 45/2445 (2%)
Strand=Plus/Plus
Query 1 ATGAGTTCGTATGGCGAGAAGAGAATGATGAAAAGGTCAGATTTTGCGCAGAAGTTGTTG 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCGAATGGCGAGAAGAGAATGATGAAAAGGTCAGATTTTGCGCAGAAGTTGTTG 60
Query 61 GATGATCTTCGGGTGAGGAAAGAACAGCTTTCAGGCTCTCAGAACTCTCTACAAAAAGAT 120
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GATGATCTTCGTGTGAGGAAAGAACAGCTTTCAGGCTCTCAGAACTCCCTACAAAAAGAT 120
Query 121 AAATATGCATATTCGAACAGAGGATTTAAGGGATCCAGAGCAAAATCTACAACATTTCAA 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AAATATGCATATTCGAACAGAGGATTTAAGGGATCCAGAGCAAATTCTACAACATTTCAA 180
Query 181 GATCTCACTAGCGG-TGGCATAGAATTTTCAAATCAGATAGTTCCTTATGGAAAAGGCCA 239
||||| |||||||| | ||||||| |||||||||| ||||||||||||| ||||| ||
Sbjct 181 GATCTTACTAGCGGCT-GCATAGAGGCTTCAAATCAGTTAGTTCCTTATGG-AAAGGGCA 238
Query 240 A-AGCATAGAGAAACTCGACTTGTCGAAAGCATTAGCATTTGCACTTGAAAACGCTGGAA 298
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 239 AGAGCATGGAGAAACTCGACTTGTCGAAAGCATTAGCATTTGCACTTGAAAATGCTGGAA 298
Query 299 AAGCTACAAGA-TCAGATCCTTCAGGGAATGCATCAATCATTAGATTCCTT-CATGATGT 356
||||||||||| | |||||||||||||| ||| ||||||||||| || ||| ||||| ||
Sbjct 299 AAGCTACAAGAGT-AGATCCTTCAGGGAGTGCCTCAATCATTAG-TTTCTTGCATGAAGT 356
Query 357 AGGAAAGAGATCTTTGGGAGAAAGAAGAAGCAGCCAA-TTTGTAGTGAAACAACAACAAG 415
||||| ||||||||||||||||| ||||||||| ||| ||| | ||| |||||||||||
Sbjct 357 AGGAAGGAGATCTTTGGGAGAAACAAGAAGCAGTCAAGTTT-TTGTGCAACAACAACAAC 415
Query 416 CTTCTTCAAGCAGTCCCATGATTCATGTTCATATCAAAGAGATTTCAAAGGGGGCTCAAA 475
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 416 CTTCTTCAAGCAGTCCCATGATTCATGTTCATATCAAAGAGATTTCAAAGGGAGCTCAAA 475
Query 476 AACTAAATCAGATCATTAAAGCATGTAGCAACGGCCTCAGTTTTCGTAAAGGAAGGTACT 535
| || |||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 476 AGCTGAATCAGATCATTAACGCATGTAGCAACGGCCTAAGCTTTCGTAAAGGAAGGTACT 535
Query 536 -TGATACAATGCGGGGAACAACTAATGGAAGGTGCCATTGAGTTGGAACAGTCTCTTCGT 594
| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 536 CT-ATACAATGCGGGGAACAACTCATGGAAGGCGCCATTGAGTTGGAACAGTCTCTTCGT 594
Query 595 TTGCTTGTAGACATACAACAAGCTTCTGAGTATACAA-CCAACAAACAGAGGAAAAACAG 653
||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||
Sbjct 595 TTGCTTGTAGACATACAACAAGCATCTGAGTATACAAGCC-ACAAACGGAGGAAAAACAG 653
Query 654 AATCAAGCTTCTTGAAG--AA----GATGATGAGGAGGAAGAGGATGCTCATAACCAAAA 707
||||||||| ||||||| || |||||||| ||||| |||||||||||||| |||||
Sbjct 654 AATCAAGCTGCTTGAAGAAAATGGTGATGATGATGAGGAGGAGGATGCTCATAATCAAAA 713
Query 708 TTACCAAAAGATCAAACAAGTCGCAAAGGCGGATATCGAGATGAGACTATTGGCGCTTAA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 714 CTACCAAAAGATCAAACAAGTCGCAAAGGCGGATATCGAGATGAGACTATTGGCACTTAA 773
Query 768 CTATCAAGAGGATAAAAACATCAAACATAGAAAGCAAACTAG-TAGTTGCGAAGATACCG 826
||||||||||||||| |||| |||||||||||||||||| || || ||||||||||||||
Sbjct 774 CTATCAAGAGGATAAGAACAACAAACATAGAAAGCAAACAAGTTA-TTGCGAAGATACCG 832
Query 827 AAG-AGAAATCAGTGAAACCTCAGAAAGGAAGGATTCCAAGTGTTGTTGCAAAGTTGATG 885
|| ||| |||| |||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 833 -AGCAGAGATCAACGAAACCTCAGAAGGGAAGGATTCCGAGTGTTGTTGCAAAGTTGATG 891
Query 886 GGACTAGGAGAGTTTCCAGAAGATGAAAAAGAGACCAACAACAAAA-ATGATGCAGAGAA 944
|||||||||||||||||| |||||||||||||||||||| | |||| |||||| ||||||
Sbjct 892 GGACTAGGAGAGTTTCCACAAGATGAAAAAGAGACCAAC-ATAAAACATGATGGAGAGAA 950
Query 945 TCTCACAAGGCCTAGAGTAATGCAAG-TAAGTGAAAATCTTGTTGAATTGAAGGCACAAA 1003
||||||||||| |||||||||| ||| | |||||||||||||||||| | ||| ||||||
Sbjct 951 TCTCACAAGGCGTAGAGTAATGGAAGCT-AGTGAAAATCTTGTTGAACTAAAGACACAAA 1009
Query 1004 GGAAGTCAACATCATTGGATTTAGTAATCCATAAGGAGACTCAAACCGCGAATGAGATAA 1063
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1010 GGAAGTCAACATCATTGGATTTAGTAATCCACAAGGAGACTCAAACCGCGAATGAGATAA 1069
Query 1064 ACTACAAAGCCAAGTCTCAACAGAAA-GATAGAGAGAAGAATGATTCAAACAGTAGAAAA 1122
||||||||||||||||||| || ||| |||||||||||| |||||||||| |||||||||
Sbjct 1070 ACTACAAAGCCAAGTCTCAGCA-AAAGGATAGAGAGAAGGATGATTCAAAGAGTAGAAAA 1128
Query 1123 AGAAGCAAAGTTTCATACAAGAAAGATGGAGAAA-TGACGACGAAAAATGTTATCAAAAG 1181
|||||||| | ||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 1129 AGAAGCAAGGCTTCATACAAGAAAGATGGAGAAACT-ACTACGAAAAATGTTATCAAAAG 1187
Query 1182 GAATCCATCTCCAACACAAAATAAGCCTAAGGTTGTCGCGAGGAGTCAACAAAAGCCAAT 1241
||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||| |
Sbjct 1188 GAATCCAACTCCAACAGAAAATAAACATAAGGTTGTCGCGAGGAGTCAACAAAAGCCTTT 1247
Query 1242 ACATAAACTTAGCAATAAGAAAGAGAAGTTGCATCGAGAAAGACAGC-ACGAAAATGGCG 1300
||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||| |
Sbjct 1248 ACATAAACTTAGCAATAAGAAAGAGAAGTTGCAGCGAGAAAGACATCGA-GAAAATGGTG 1306
Query 1301 TAACGAAAAATCATTCACCAAAAA-CTTTGAGTTCTGTGGATATACAAACGAAGGTACCA 1359
|||||| |||||||||| |||||| |||||||||| | |||| |||||| |||||||| |
Sbjct 1307 TAACGACAAATCATTCA-CAAAAACCTTTGAGTTCAGAGGATTTACAAATGAAGGTACGA 1365
Query 1360 CTCACAGACAAAGCTAAAGCTATGAAGAAAA-TTTTTACTCATGTTGAAGTAGCACAAAA 1418
|||| | |||||||||||||| ||||||||| |||| |||||||||| |||||||||||
Sbjct 1366 CTCATAAACAAAGCTAAAGCTGTGAAGAAAAGCTTTT-CTCATGTTGAGGTAGCACAAAA 1424
Query 1419 GGGAAAAGAAGGAGAGGTTCATAAAGTCAAGATCCGCGAGAAGAAAAACCAATACATCTA 1478
|||||||||||||||||||| ||||| ||||||| |||| |||||||||||| |||||||
Sbjct 1425 GGGAAAAGAAGGAGAGGTTCTTAAAGCCAAGATCTGCGAAAAGAAAAACCAAGACATCTA 1484
Query 1479 TAATCCAAATGAAGGATTGTGCAAAGTAATGAAGCGAGTGGAGA-TAACAAAAGCAGATG 1537
|| | ||||||||| |||||||||||||||||||||| |||| ||| |||| |||||
Sbjct 1485 TATTTCAAATGAAGCATTGTGCAAAGTAATGAAGCGACCAGAGATTAA-GAAAGAAGATG 1543
Query 1538 GAAAACATGATCAAATGTTACTCAGAAGCTATAATGACAGTAATAAGATGAAAGCAGAAG 1597
|||||||||||| ||||||||| ||| || |||||||||||| ||| |||||||||||
Sbjct 1544 GAAAACATGATC---TGTTACTCAAAAGTTACAATGACAGTAATGAGAAGAAAGCAGAAG 1600
Query 1598 CAGAGACATGCATCAAAAGTTCTCAAGTTTCAGGTGTTGAGCATAAGAAAGAGATCAAAG 1657
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 TAGATACATGCATCAAAAGTTCTCAAGTTTCAGGTGTTGAGCATAAGAAAGAGATCAAAG 1660
Query 1658 ATGACTCAATTCTGCTCATTGCCGCAGAGAGAGTCCCATGCCAAGCTCCATCAGGAAATC 1717
||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1661 ATGACTCAATTCTTCTTATTGCCGCAGAGAGAGTCCCATGTCAAGCTCCATCAGAAAATC 1720
Query 1718 AGCATCATGGGCTTATGTTCACGGATGGGATGGATCAACAAGCTCCAATATCAAAGTCTG 1777
|||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1721 AGCATCATGGGCGTATGTTCACAAATGGGATGGATCAACAAGCTCCAATACCAAAGTCTG 1780
Query 1778 AAGGAAATTCAGTTAGATTATCCAAGACAGTATATGAAGGAGCAAAAGGAGAGGTAGAAG 1837
| |||||||||| || ||||||||||||||||||| ||| | ||||||| ||| ||||||
Sbjct 1781 ATGGAAATTCAGATATATTATCCAAGACAGTATATAAAGAAACAAAAGGGGAGATAGAAG 1840
Query 1838 CTAGTTTACCCTTGTTGGAGAAGCGACAAGAACACCAAAAACGAGAAACTACAGAGACAT 1897
|| |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 1841 CTGGTTTACCCTTGTTGGAGAAGCGACAAGAACGCCGAAAACGAGAAACAACAGAGACAT 1900
Query 1898 TATCTGAAAATGAAACAAACCTCAAGAGGATATTTGTGAAAAGCCAACTATTTCTAGACA 1957
|||| |||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 1901 TATCCGAAAATGAAATAAACCTAAAGAAGATATTTGTGAAAAGCCAATTATTTCTAGACA 1960
Query 1958 CAGCAAAGGCACTTTTCAAACTCAACATTCCTCAAAATGTATTTCATGACGCCACCGGTG 2017
|||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 1961 CAGCAAAGGCACATTTCAAACTCAACATTCCTCAAAATGTCTTTCATGACACCACCAGTG 2020
Query 2018 GGAGCAACTACTTA-CAAGAAGACAAGAATCTAATCCTCGAGTGTGCCTTCGAGCTAATG 2076
||||| | ||| || ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2021 GGAGCTATTAC-TATCAAGAAGACAAGAATCTAACCCTCGAGTGTGCCTTCGAGCTAATG 2079
Query 2077 AAACGAAAAAGGAGATTTCAAGAGTTAAGTGTCCATCCTTTCGTGAAGGTACCCATCAGT 2136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2080 AAACGAAAAAGGAGATTTCAAGAGTTAAGTGTCCATCCTTTCGTGAAGGTACCCATAAGT 2139
Query 2137 TCCTCTAGAGTAAACTCATTGGACCATCTTATTAGACAAATAAGCAAAGAGTTAGAGAAG 2196
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2140 TCCTCTAAAATAAACTCATTGGACCATCTTATTAGACAAATAAGCAAAGAGTTAGAGAAG 2199
Query 2197 CTGAGAGCCTACGGTAGGGACTGCCACATTGGATCACATGTCGAAGACTACGTGTTGGAA 2256
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2200 CTGAGAGCCTACGGTAGAGACTGCCACATTGGATCACATGTTGAAGACTACGTGTTGGAA 2259
Query 2257 AGAGATGTTCACCATAAAGACCCAAACTTGAACTCAATGTGGGATATGGGCTGGAACGAT 2316
|||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct 2260 AGAGATGTTCACTATAAAGACCCATACTTGAACTCAATGTGGGACATGGGTTGGAATGAT 2319
Query 2317 TCGATGCTCGCCTTCATCGAGAAAGATGATGTTATGAGGGATATAGAGAGGGAAGTCTTC 2376
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2320 TCGATGCTCGCGTTCATCGAGAAAGATGATGTTATGAGGGATATAGAGAGGGAAGTCTTC 2379
Query 2377 AGTGGACTCTTGGAGGAGATAACAAGAGATCTTATATGCATATAG 2421
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2380 AGTGGACTCTTGGAAGAGATAACAAGAGATCTTATATGCATATAG 2424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120230305275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5