BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494768
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42680.1 | Symbols: | Protein of unknown function, DUF617 |... 1170 0.0
> AT5G42680.1 | Symbols: | Protein of unknown function, DUF617
| chr5:17114596-17115417 FORWARD LENGTH=822
Length=822
Score = 1170 bits (633), Expect = 0.0
Identities = 737/787 (94%), Gaps = 7/787 (1%)
Strand=Plus/Plus
Query 1 GAACAACAAGAATAGGTGAATAGAAAGAAAAACAAGTTAAAACTATGCCGATCCGATCTA 60
|||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1 GAACAACAAGAAAAGGTGAGTAGAAGGAAAAACAAGTAAAAACTATGCCGATCCGATCTA 60
Query 61 GCCCCTTCTTCAATATGGATAGCTCGGCCGTGCTCTCGCTCTTGAGGCATACGGGCAGCT 120
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||| | ||
Sbjct 61 ACCCCTTCTTCAATATGGATAGCTCGGCCTTGCTCTCGCTCTTGCGGCACACGGGTACCT 120
Query 121 CTATGGATTCT-AAACCTTCGAAGAAAACTTCTGGAAGCATAGGTGGCGGGGTGCTCAAA 179
| ||||| ||| ||| | ||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct 121 CCATGGACTCTAAAAGC-TCGAAGAAATCTTCTGGAAGCATCGGTGGTGGGGTGCTTAAA 179
Query 180 ATGTTCAAGCTCATACCAATGCTATCATCTGGTTGCAAGATGGTGAACTTGTTAAGTCGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 ATGTTCAAGCTCATACCAATGCTATCATCTGGTTGCAAGATGGTGAACTTGTTGAGTCGA 239
Query 240 GGGCATCGAAGACCCTTACTTAAAGACTACGCAACAACGGGGACGATATTCGGGTTTCGC 299
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 240 GGGCATCGAAGACCCTTACTTAAAGACTACGCAACAACGGGAACAATATTCGGGTTTCGC 299
Query 300 AAAGGAAGAGTCTTTCTTGCAATACAAGAAGATCCTCATTGCTTGCCAATGTTCATCATC 359
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 300 AAAGGAAGAGTCTTTCTTGCTATACAAGAAGATCCTCATTGCCTGCCAATTTTCATCATC 359
Query 360 GAGCTCCCGATGCTGACTTCGGCGCTTCAGAAGGAGATGGCCTCAGAGACTGTGAGGATT 419
|||||||||||||||||||||||||| || |||||||||||||| || ||||| ||||||
Sbjct 360 GAGCTCCCGATGCTGACTTCGGCGCTGCAAAAGGAGATGGCCTCGGAAACTGTTAGGATT 419
Query 420 GCTTTAGAAAGCGAGACCAAA-ACATCGAGGAAGAAGGTGTTGGAGGAGTATGTGTGGGG 478
||||| ||||||||||| ||| || |||||||||||||||||||||||||| ||||||||
Sbjct 420 GCTTTGGAAAGCGAGAC-AAAGACGTCGAGGAAGAAGGTGTTGGAGGAGTACGTGTGGGG 478
Query 479 GATCTACTGTAACGGGCGGAAAATCGGGTATTCGATACGGAGGAAA-AACATGAGTGAGG 537
||| ||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 479 GATTTACTGTAACGGACGGAAAATCGGGTATTCGATAAGGAG-AAAGAACATGAGTGAGG 537
Query 538 AGGAGATGTATGTGATTGATGCATTGAGAGGTGTTTCAATGGGGGCTGGAGTTTTACCAT 597
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 538 AGGAGATGTATGTGATTGATGCATTGAGAGGTGTTTCCATGGGGGCTGGAGTTTTACCAT 597
Query 598 GTAAGAACCAATATGATCAAGAAACAGAAGGAGAAATGACTTACATGAGAGCTCGATTCG 657
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 598 GTAAGAACCAATATGATCAAGAGACAGAAGGAGAAATGACTTACATGAGAGCTCGATTCG 657
Query 658 ATAGAGTGATTGGTTCTAAGGATTCTGAAGCATTGTATATGATCAACCCTGAAGGTAGTG 717
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 658 ATAGAGTGATTGGCTCTAAAGACTCTGAAGCATTGTATATGATCAACCCTGAAGGTAGTG 717
Query 718 GTCAGGGCACAGAACTTAGTATCTATTTTCTCAGGTCTCATTAACTGTTTGTTACACTTT 777
||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 718 GTCAGGGCACAGAGCTTAGTATTTACTTTCTCAGGTCTCATTAACTGTT-GTTACACTTT 776
Query 778 TCTTTTT 784
| |||||
Sbjct 777 TATTTTT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5