BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494773
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42630.1 | Symbols: KAN4, ATS | Homeodomain-like superfamily... 1698 0.0
> AT5G42630.1 | Symbols: KAN4, ATS | Homeodomain-like superfamily
protein | chr5:17073779-17075856 REVERSE LENGTH=1158
Length=1158
Score = 1698 bits (919), Expect = 0.0
Identities = 1090/1170 (93%), Gaps = 22/1170 (2%)
Strand=Plus/Plus
Query 1 TAAAAGTGTTGTTTCTGCAGACctctctctctttctctttttctctttCCACACATTC-T 59
||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |
Sbjct 3 TAAAAGTGTTGTTTCTGCAGAGCTCTCTCTCTCTCTCTCGTTCTCTTTCCACACATTCTT 62
Query 60 TGATCTCCACTATTTAAATAGACAAGGATTATAAAGAAAATAGTGAGATGATGATGTTAG 119
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 63 TGATCTCCACTATTTAAGTAGACAAGAATCATAAAGAAAATAGTGAGATGATGATGTTAG 122
Query 120 ATTCAAGAAACACTATGAGAGCTTTAAACTCAATCCCAGATCTGTCCCTTCAGATCAGTC 179
| |||||||||| ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 123 AGTCAAGAAACAGTATGAGAGCTTCAAACTCAGTCCCAGATCTGTCTCTTCAGATCAGTC 182
Query 180 TTCCTAACTCTCACGCCGGAAAACCTCTTCACGGCGGTGACCGGAGCTCCACAAGCAGTG 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TTCCTAACTATCACGCCGGAAAACCTCTTCACGGCGGTGACCGGAGCTCCACAAGCAGTG 242
Query 240 ACTCCGGAAGCAGCCTCAGTGAGTTAAGCCATGAGAACAACTTCTTCAACAAACCTCTCT 299
| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 243 ATTCTGGAAGCAGCCTCAGTGACCTGAGCCATGAGAACAACTTCTTCAACAAACCTCTCT 302
Query 300 TGAGCTTAGGCTTTGAACATCATCATCATCAAAGGAACTCAAACATGTTCCAACCCCAAA 359
|||||||||| |||| || ||||||||||||||| |||||||||||||||||| ||||
Sbjct 303 TGAGCTTAGGATTTG-AC--CATCATCATCAAAGGCGCTCAAACATGTTCCAACCTCAAA 359
Query 360 TCTATGGCCGAGATTTCAAGAGAAGCTCATCATCAATGGTGGGTCTTAAACGAAGCATTA 419
|||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 TCTACGGTCGAGATTTCAAGAGAAGCTCATCATCAATGGTTGGTCTTAAACGAAGCATTC 419
Query 420 GAGCTCCAAGAATGAGATGGACTTCTACTCTTCATGCTCATTTCGTCCATGCTGTTCAAC 479
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 GTGCTCCAAGAATGAGATGGACTTCTACTCTTCATGCTCACTTCGTCCATGCTGTTCAAC 479
Query 480 TTCTTGGCGGCCATGAAAGAGCAACGCCTAAATCAGTGTTGGAGTTGATGAATGTGAAGG 539
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 480 TTCTTGGCGGCCATGAAAGAGCAACGCCTAAATCAGTGTTGGAGCTCATGAATGTGAAGG 539
Query 540 ATCTAACCCTAGCTCATGTCAAGAGTCATTTGCAGATGTATAGAACAGTGAAATGCACTG 599
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 ATCTAACCCTAGCTCATGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAATGCACTG 599
Query 600 ATAAAGGATCATCAGGAGAAGGAAAGGTAGAGAAAGAGGCAGAGCAGAGGATAGAGGACA 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATAAAGGATCACCAGGAGAAGGAAAGGTAGAGAAAGAGGCAGAGCAGAGGATAGAGGACA 659
Query 660 ATAATAATAATGAAGAAGCTGATGAAGGAACTGACACAAATTCGCCAAACTCATCAACTG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 ATAATAATAATGAAGAAGCTGATGAAGGAACTGACACAAATTCGCCAAACTCATCATCTG 719
Query 720 TGCAAAAGACCCAAAGAGCTCCATGGTCATCCACAAAGGGAGTACCTAGGAGCATATCTA 779
|||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||
Sbjct 720 TGCAAAAGACCCAAAGAGCTTCATGGTCATCGACAAAGGAAGTATCTAGGAGCATATCTA 779
Query 780 CACAAGCAGATCCTCATTTGGGAACAACTCAACACACTAAGGAAAATGAGGAGAAAGAGG 839
|||||||| || |||| |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 780 CACAAGCATATTCTCACTTGGGAACAACTCATCACACTAAGGACAATGAAGAGAAAGAGG 839
Query 840 CGACCAATATTCATCTCAATTTGGAATTCACATTGGGGCGGCCGAGTTGGGGGATGGACT 899
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 840 ATACCAACATTCATCTCAATTTGGATTTCACATTGGGGCGGCCTAGTTGGGGGATGGAAT 899
Query 900 ATGCGGAACCGTCTAGCGATTTAACCCTTCTCAAGTGCTAATTGCCTAACTTGGAGAGCT 959
|||||||||| || || |||||||||||||||||||||||||||||| | | ||||
Sbjct 900 ATGCGGAACCCTCCAGTGATTTAACCCTTCTCAAGTGCTAATTGCCT---T---A-AGCT 952
Query 960 ACAACAAATAAG-C---TTAGATTACCAGGTTTAACATAATATATTTAACTTGTTTTGAT 1015
|||||||||||| | |||| ||||||| ||||||||||| | || |||||||||||||
Sbjct 953 ACAACAAATAAGTCAGCTTAGGTTACCAGTTTTAACATAAT-T-TT-AACTTGTTTTGAT 1009
Query 1016 CATATGAGCTTTGGAAGAATCATATTATCATCATATATGAACTTCTTGC-AAGAATCTTC 1074
||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 1010 CATATGAGCTTCGGAAGAATCATATTATCATCATATATGAACTTCTTTCCAAGAATGTTC 1069
Query 1075 TATGAGTTTTTTGATATGTATAATCAAGAAAATCGATTT-AAGTAGTAAGTATTGTTGTA 1133
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1070 TATGAGTTTTTTGATATGTATAATCAAGAGAATCG-TTTGAAGTAGTAAGTATTGTTGTA 1128
Query 1134 GTG-GATGAGAAGGGAGTACAAGTTCAAGT 1162
||| ||||||||||||||||||||||||||
Sbjct 1129 GTGCGATGAGAAGGGAGTACAAGTTCAAGT 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5