BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494779
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42560.1 | Symbols: | Abscisic acid-responsive (TB2/DP1, HV... 1580 0.0
> AT5G42560.1 | Symbols: | Abscisic acid-responsive (TB2/DP1,
HVA22) family protein | chr5:17014923-17017252 FORWARD LENGTH=1364
Length=1364
Score = 1580 bits (855), Expect = 0.0
Identities = 1133/1256 (90%), Gaps = 64/1256 (5%)
Strand=Plus/Plus
Query 1 ATAATTTTCAAAGAGGCGTGAC-TTAAAAATCTGCAAAAAAGCAAATCC-------GA-A 51
||||||||| |||||||||||| ||||||||||| |||||||||||||| || |
Sbjct 1 ATAATTTTCTAAGAGGCGTGACTTTAAAAATCTGTAAAAAAGCAAATCCGAAGAAAGAGA 60
Query 52 GAGAGAGAAGGTGATTTTGAAATTTCAGATAACGCCG-A-TATTTTACTCTCGCCGGAGC 109
||||||||||||||||||||||||||||||||||| | | | ||||| |||||||||||
Sbjct 61 GAGAGAGAAGGTGATTTTGAAATTTCAGATAACGCAGAATTTTTTTATTCTCGCCGGAGT 120
Query 110 TTTCTCCT-CCACCGTCTCTGCTTCTCGCCGCCGCCGTACACAGTTGTTCTTCTCTCCCG 168
|||||||| |||||||||||| |||||| |||||||||||||||||||| |||||| |||
Sbjct 121 TTTCTCCTCCCACCGTCTCTGATTCTCGTCGCCGCCGTACACAGTTGTTGTTCTCTGCCG 180
Query 169 TTTCTTCAAGATGATTGGATCGTTTCTTACAAGAGGCTTGGTGTATGAAAATCATAATGG 228
||||| |||||||||||||||||||||||||||||| || | | || ||||
Sbjct 181 TTTCTGCAAGATGATTGGATCGTTTCTTACAAGAGGATT-G-G--TG---------ATGG 227
Query 229 TGTTGGGTTATGCTTACCCTGCGTATGAATGTTACAAGACTGTTGAAAAGAATAGGCCTG 288
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TGTTGGGCTATGCTTACCCTGCGTATGAATGTTACAAGACTGTTGAAAAGAATAGGCCTG 287
Query 289 AAATTGAGCAACTTCGCTTTTGGTGCCAGTACTGGATATTGGTTGCTTGCTTGACAGTTT 348
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 288 AAATCGAGCAACTTCGCTTTTGGTGTCAGTACTGGATATTGGTTGCTTGCTTGACAGTTT 347
Query 349 TTGAGAGAGTTGGTGATGCGTTTGTTTCATGGGTTCCAATGTATAGTGAAGCTAAGTTAG 408
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 348 TTGAGAGAGTTGGTGATGCGTTTGTTTCATGGGTTCCGATGTACAGTGAAGCTAAGTTGG 407
Query 409 CATTCTTCATATACCTGTGGTATCCTAAAACTAGGGGTACTACATATGTCTACGAGTCTT 468
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 408 CATTCTTCATATACCTGTGGTATCCTAAAACCAGGGGTACTACATATGTCTACGAGTCCT 467
Query 469 TCTTTAGGCCATATCTTTCACAGCATGAGAATGACATAGACCATAGTTTGTTGGAGCTAA 528
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 468 TCTTTAGGCCATATCTCTCACAGCATGAGAATGACATAGACCATAGTTTGCTCGAGCTAA 527
Query 529 GGACAAGAGCTGGAGATATGGCTGTTATATACTGGCAACGAGTTGCAAGCTATGGTCAGA 588
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 528 GGACTAGAGCAGGAGATATGGCTGTTATATACTGGCAACGAGTTGCAAGTTATGGTCAGA 587
Query 589 CTAGAATCCTTGAGATTTTGCAGTATGTTGCTG-ACCAATCAACTCCAAGGCCGCAGCCA 647
| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 588 CCAGAATCCTTGAGATTTTGCAGTATGTTGCTGCAC-AATCAACTCCAAGACCGCAGCCA 646
Query 648 ----A-AA-CGTGAAGGTAGAGCT---C---CTGCT---AAGCCTAAGAAAGCCCCTGTC 692
| || |||| |||||||||| | || || |||||||||||||||||||||
Sbjct 647 CCTCAGAAACGTGGAGGTAGAGCTAATCAAGCTCCTGCGAAGCCTAAGAAAGCCCCTGTC 706
Query 693 CCCCAACCAGAATCTGAAGAAGCATCATTACCCTCGTCCCCTAGCTCATCTTCAAGTGAA 752
|||||| ||||| ||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 707 CCCCAATCAGAACCTGAAGAAGTATCATTGTCCTCGTCTTCTAGCTCATCTTCAAGTGAA 766
Query 753 AATGAAGGTAATGAGCCAACCCGTAAAGCATCAGGCCCGTCAAGACCTAAACCGACAGTG 812
|||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 767 AATGAAGGTAATGAGCCAACCCGTAAAGTATCAGGCCCGTCAAGACCTAGACCAACAGTG 826
Query 813 ACATCTGTACCAGCCGCAGATCCCAAAAACGCGGATATCACTCAGATAGCACAAAAATCA 872
|||||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 827 ACATCTGTACCAGCTGCAGATCCCAAAAACGCGGGTACCACTCAGATAGCACAGAAATCA 886
Query 873 GTAGCTTCCCCGATTGTGAACCCGACC-CAATCAACCACCCAAGTGGAAACGGAACCAAT 931
||||||||||| ||||||||||| ||| || |||||||||||||||||| | | |||
Sbjct 887 GTAGCTTCCCCAATTGTGAACCC-ACCACAGTCAACCACCCAAGTGGAA-C----C-AAT 939
Query 932 GCAGATAGAAGAAGTGGAAGGAGAGGCAGAATCAGGGAATGAAAATCCAAACCCGGAAGG 991
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 940 GCAGATAGAAGAAGTGGAAGGAGAGGCAGAATCAGGGAATGAAAATCCCAACCCGGAAGG 999
Query 992 TCCAAAAGAGACGGTAATGGAGGAGACAATCAGGATGACTCGTGGGAGGTTGAGGAAGAC 1051
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TCCAAAGGAGACAGTGATGGAGGAGACAATCAGGATGACTCGTGGGAGGTTGAGGAAGAC 1059
Query 1052 GCGTTCAGAAGAAAGCCGTTGATagaagaagaagaagaagCTGAATTCAAAAAATTGTTA 1111
|||||| ||||||||||||||| | | ||||||||||||||| ||| |||||||||||||
Sbjct 1060 GCGTTCGGAAGAAAGCCGTTGA-A-A-GAAGAAGAAGAAGCTCAATCCAAAAAATTGTTA 1116
Query 1112 ATTACTTGCATAACATTTGTCTCTCTTCTCTCTT--TC-------C-TGCTTCTAGAATT 1161
|||||||||||||| | |||||||||||||||| || | |||||||||||||
Sbjct 1117 CTTACTTGCATAACAGTGGTCTCTCTTCTCTCTTACTCTATGTTTCCTGCTTCTAGAATT 1176
Query 1162 ACGTTGACAGGAACTAACAACTAGTGGGAATGGTTTGTATGAACAGTAAATTTGTT 1217
||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||
Sbjct 1177 ACGTTGACAGGAACTAACAACTAGTGGGAATGGTT-GTATGAAAAGTTAATCTGTT 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5