BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494784
Length=620
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42500.1 | Symbols: | Disease resistance-responsive (dirige... 822 0.0
AT5G42510.1 | Symbols: | Disease resistance-responsive (dirige... 761 0.0
AT3G58090.1 | Symbols: | Disease resistance-responsive (dirige... 115 5e-25
> AT5G42500.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr5:16994240-16994930 REVERSE
LENGTH=691
Length=691
Score = 822 bits (445), Expect = 0.0
Identities = 549/598 (92%), Gaps = 11/598 (2%)
Strand=Plus/Plus
Query 1 CTAACATGGCTAAACGTTttctgattcttcttcctctcttctcaactattcttcttcttG 60
|||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||
Sbjct 10 CTAACATGGCTAAACGTTTTCTCCTTCTTCTTCCTCTTTTGTCAACTATTCTACTTCTTT 69
Query 61 CCGTAACCGTTACAGAATCCGAAGCTTACTCGACAACAACGCCGTTTCAAGGCTACAAGC 120
||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 70 CCGTATCCGTTACAGAATCCGAAGCTTACTCCACAACAAAGCCGTGTCAAGGCTACAAGC 129
Query 121 CGGAGT-GCTTCACTCACCTCCACTTTTACTTCCATGACGTCATCACCGGTGACAAACCT 179
|||| | ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 130 CGGA-TAAATTCACCCACCTCCACTTTTACTTCCATGACGTCATCTCCGGTGACAAACCT 188
Query 180 ACCGCCATCAAAGTCGCCGAAGCCCGCCCAACAAACTCCCT-CAACGTCAATTTTGGCGT 238
|||||| ||||||| || |||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 189 ACCGCCGTCAAAGTTGCGGAAGCCCGCCGAACAAACT-CCTCCAACGTCAATTTTGGCGT 247
Query 239 GATTATGATCGCTGATGATCCGTTGACAGAAGGACCTGACCCGAGTTCAAAGGTAGTGGG 298
||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||||
Sbjct 248 GATTATGATCGCTGATGATCCGTTGACCGAAGGACCAGACCCGAGCTCAAAGGAAGTGGG 307
Query 299 AAGAGCTCAGGGGATGTACGCATCGACGGCCATGAAGGACAT-AGTCTTCACAATGGTAT 357
||||||||| ||||||||||||| ||| ||||||||| |||| || |||||||||||| |
Sbjct 308 AAGAGCTCAAGGGATGTACGCATTGACAGCCATGAAGAACATAAG-CTTCACAATGGTCT 366
Query 358 TTAACTTGGCTTTCACGGAAGGAGAGTTTAATGGAAGCACCCTCGCGATGTATGGCCGGA 417
||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 367 TTAACTTGGCTTTTACGGCGGGAGAGTTTAATGGAAGCACCGTCGCGATGTATGGACGGA 426
Query 418 ATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTCAGGT 477
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 427 ATGAGATATTTTCGAAGGTGAGAGAGATGCCAATTATTGGAGGAACCGGTGCTTTCAGGT 486
Query 478 TTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTCG 537
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 487 TTGCTAGAGGCTATGCACAGGCCAAGACTTATAAGGTTGTTGGTCTAGATGCCGTGGTCG 546
Query 538 AGTATAATGTCTTCATTTGGCATTAATTATTTCGCATATTTGTTGTTTAATGTCTTTC 595
||||||||||||||||||||||||||| |||| ||||||| || | ||||||||||
Sbjct 547 AGTATAATGTCTTCATTTGGCATTAATCATTT-GCATATT-GTC-T--AATGTCTTTC 599
> AT5G42510.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr5:16998268-16998816 REVERSE
LENGTH=549
Length=549
Score = 761 bits (412), Expect = 0.0
Identities = 512/559 (92%), Gaps = 11/559 (2%)
Strand=Plus/Plus
Query 6 ATGGCTAAACGTTttctgattcttcttcctctcttctcaactattcttcttcttGCCGTA 65
|||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||
Sbjct 1 ATGGCTAAACGTTTTCTGCTTCTTCTTCCTCTTTTGTCATCTATTCTTCTTCTTGCCGTG 60
Query 66 ACCGTTACAGAATCCGAAGCTTACTCGACAACAACGCCGTTTCAAGGCTACAAGCCGGAG 125
||| | | | | ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 61 TCCG-T-C---A--C--AGCTTACTCCACAACAACGCCGTATCAAGGCTACAAGCCGGAG 111
Query 126 TGCTTCACTCACCTCCACTTTTACTTCCATGACGTCATCACCGGTGACAAACCTACCGCC 185
||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 112 AAATTCACCCACCTCCACTTCTACTTCCATGACGTCATCTCCGGTGACAAACCTACCGCC 171
Query 186 ATCAAAGTCGCCGAAGCCCGCCCAACAAACTCCCTCAACGTCAATTTTGGCGTGATTATG 245
||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct 172 GTCAAAGTTGCCGAAGCCCGCCCAACAACCACCCTCAACGTCAAGTTTGGCGTGATTATG 231
Query 246 ATCGCTGATGATCCGTTGACAGAAGGACCTGACCCGAGTTCAAAGGTAGTGGGAAGAGCT 305
|||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||
Sbjct 232 ATCGCTGATGATCCGTTGACCGAAGGACCAGACCCGAGCTCAAAGGAAGTGGGAAGAGCT 291
Query 306 CAGGGGATGTACGCATCGACGGCCATGAAGGACATAGTCTTCACAATGGTATTTAACT-T 364
||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
Sbjct 292 CAGGGGATGTACGCATCAACAGCCATGAAGGACATAGTCTTCACAATGGTCTTTAACTAT 351
Query 365 GGCTTTCACGGAAGGAGAGTTTAATGGAAGCACCCTCGCGATGTATGGCCGGAATGATAT 424
| |||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 352 -GTTTTCACGGCAGGAGAGTTTAATGGAAGCACCATCGCGGTGTATGGACGGAATGATAT 410
Query 425 ATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTCAGGTTTGCTAG 484
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 411 ATTTTCGAAGGTGAGAGAGTTGCCGATTATTGGAGGAACTGGTGCTTTCAGGTTTGCTAG 470
Query 485 AGGGTATGCACAGGCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTCGAGTATAA 544
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGGCTATGCACTGCCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTCGAGTATAA 530
Query 545 TGTCTTCATTTGGCATTAA 563
|||||||||||||||||||
Sbjct 531 TGTCTTCATTTGGCATTAA 549
> AT3G58090.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:21512319-21514281 REVERSE
LENGTH=1044
Length=1044
Score = 115 bits (62), Expect = 5e-25
Identities = 170/220 (77%), Gaps = 15/220 (7%)
Strand=Plus/Plus
Query 357 TTT-AACTTGGCTTTCACGGAA-GGAGAGTTTAATGGAAGCACCCTCG-CGATGTATGGC 413
||| ||||| | |||||| || || || ||| || |||||| | | | |||||||||
Sbjct 671 TTTCAACTTTGTTTTCAC-AAAGGGTGAATTTTCCGGCAGCACCGT-GTCCATGTATGGC 728
Query 414 CGGAATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTC 473
|||||| ||||||||||||||||||||||||||||| || ||||| || || || |||
Sbjct 729 CGGAATCCGATATTTTCGAAGGTGAGAGAGATGCCGATCATCGGAGGTACTGGAGCATTC 788
Query 474 AGGTTTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGT-TGGT-CTAG---A-- 526
||||| | ||||| |||||||| |||||||||| || | || | | | || |
Sbjct 789 AGGTTCGGAAGAGGATATGCACAAGCCAAGACTTTTACG-TTCAATACTACCAGTGGAAA 847
Query 527 TGCCGTGGTCGAGTATAATGTCT-TCATTTGGCATTAATT 565
||| |||||| |||||||||| | | ||||||||||||||
Sbjct 848 TGCTGTGGTCAAGTATAATGTTTAT-ATTTGGCATTAATT 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29889317465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5