BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494786
Length=3267
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42490.1 | Symbols: | ATP binding microtubule motor family ... 4761 0.0
> AT5G42490.1 | Symbols: | ATP binding microtubule motor family
protein | chr5:16988609-16992622 REVERSE LENGTH=3264
Length=3264
Score = 4761 bits (2578), Expect = 0.0
Identities = 3073/3302 (93%), Gaps = 73/3302 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAGTGGCGGAAAGGGGGAGAAGATATTGGTTTCGGTAAGGGTAAGGCCGCAGAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGTGGCGGAAAGGGGGAGAAGATATTGGTTTCGGTAAGGGTAAGGCCGCAGAAC 60
Query 61 GAGAAGGAGAAGGCGAGGAATGATATATGCGATTGGGAATGTGTTAACAACACAACAATA 120
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 GAGAAAGAGAAGGCGAGGAATGATATATGTGATTGGGAATGTGTAAACAACACAACAATA 120
Query 121 ATCTGCAATAATAATTTGCCTGAGAGGTCTCTCTTCCCCTCGACCTATACATTTGATAAA 180
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 GTATGCAATAACAATTTGCCTGAGAGGTCTCTCTTCCCCTCTACCTATACATTTGACAAA 180
Query 181 GTGTTTGGATTCGATTCCCCCACGAAACAAGTCTATGAAGATGGAGCTAAGGAGGTTGCT 240
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GTGTTTGGATTTGATTCTCCCACGAAACAAGTCTATGAAGATGGAGCGAAGGAGGTTGCT 240
Query 241 CTTTGTGTTCTCGGCGGAATCAATTCAAGCATTTTCGCATATGGACAGACAAGCAGTGGG 300
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 241 CTTTGTGTTCTCGGCGGAATCAACTCAAGTATTTTCGCATATGGACAGACAAGCAGTGGG 300
Query 301 AAGACATACACAATGTGTGGCATCACTAAATTTGCAATGGACGACATTTTTTGTTACATT 360
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAGACGTATACAATGTGTGGCATCACTAAATTTGCAATGGATGACATTTTTTGTTACATT 360
Query 361 CAAAAGCATACAGATCGCAAATTCACTCTGAAATTCTCTGCAATTGAGATTTACAATGAA 420
||||||||||| || |||||||| || || ||||||||||| |||||||| |||||||||
Sbjct 361 CAAAAGCATACGGACCGCAAATTTACCCTCAAATTCTCTGCGATTGAGATCTACAATGAA 420
Query 421 GCTGTGAGGGATCTCCTAAGTGGGGATAATAATCAACTGAGGCTTCTCGATGATCCAGAG 480
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 421 GCTGTGAGGGATCTCCTAAGTGGGGATAATAATCAACGGAGGCTCCTCGATGATCCAGAG 480
Query 481 AGAGGGACCGTCGTTGAGAAACTTATTGAGGAGACCATCCGAGACAGATCACATCTGGAG 540
||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||
Sbjct 481 AGAGGAACCGTCGTTGAGAAACTTATTGAGGAGACCATCCAAGACAGAACACATCTAGAG 540
Query 541 GAACTTCTTACAGTCTGTGAAACTCAGAGGAAGATTGGAGAGACCTCCCTGAATGAAGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAACTTCTTACAGTCTGTGAAACTCAGAGGAAGATTGGAGAGACCTCCCTGAATGAAGTT 600
Query 601 AGCTCTAGATCACATCAAATACTCCGGCTGACAATTGAAAGCACTGGTCGAGAATATTCT 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 AGCTCTAGATCACATCAAATACTCCGGCTGACAATCGAAAGCACTGGTCGAGAATATTCT 660
Query 661 CCTGATAGCTCAAGCACTCTTTCAGCGTCCGTGTGCTTCATTGATCTGGCTGGAAGTGAA 720
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCGGATAGCTCAAGCACTCTTGCAGCGTCCGTGTGCTTCATTGATCTGGCTGGAAGTGAA 720
Query 721 CGAGCTTCTCAGACTTTATCTGCTGGTACAAGATTGAAAGAAGGTTGTCATATAAACAGG 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGTGCTTCTCAGACTTTATCTGCTGGTACAAGATTGAAAGAAGGTTGTCATATAAACAGG 780
Query 781 AGTTTACTTACTCTTGGAACAGTCATCCGCAAAC------T--A---A-GT-A-A-AGCT 825
|||||||||||||||||||| ||||||||||||| | | | || | | ||||
Sbjct 781 AGTTTACTTACTCTTGGAACGGTCATCCGCAAACTAAGGTTCGATCCATGTGATATAGCT 840
Query 826 CAATCCCAGGTGGAGAATTTACTTAAATCAACAGCAGAAGAGCGGTCTTCTAGGATGGAC 885
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAATCTCAGGTGGAGAATTTACTTAAATCAACAGCAGAAGAGCGGTCTTCTAGGATGGAT 900
Query 886 GAACAATCCATGTTTAGCTCCATGGATTTTGATGCCGATTTCCGAAGAAGAAGCTATGAT 945
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 GAACAATCCATGTTTAGCTCCATGGATTTTGATGCTGATTTCCGAAGAAGAAGCTATGAT 960
Query 946 TCAACAGATCTTGGAGAACCTAGTATCATCAATAATTTAACCGAGAGGAACTTTGAGTTT 1005
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 TCAACAGATCTTGGAGAACCTAGTATCATCAATAACTTAACCGAGAGGAACTTTGAGTTT 1020
Query 1006 TTGGAAAATTCTGAAGAAGATGATTTCCTGCTAGATGATAAAACCCCCCAATTTTCGAGG 1065
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1021 TTGGAAAATTCTGAAGAAGATGATTTCCTGCTAGATGATAAGACCCCTCAATTTTCGAGG 1080
Query 1066 CATAACCTGTATGATGGCTGGGAGGAGTTGGTTCAAATAACCGACGAAAGACTTGAAGAT 1125
|||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1081 CATAACCTGTATGATGACTGGGAAGAGTTGGTTCAAATAACCGACGAAAGACTGGAAGAT 1140
Query 1126 GCATGCAAAGAAGTTAGATGCATTGAACCTGAAGCTGAGCAGAGTATTAGACAACCAGCA 1185
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1141 GCATGCAAAGAAGTTAGATGCATTGAACCTGAAGCTGAGCAGAGTAGTGGACAACCAGCA 1200
Query 1186 ACAGT-TGAAATCCATGACTTATTAGAATTCATTGTTGATAAGAGAGCTATCTCTGAGGT 1244
|| | |||| |||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct 1201 GCA-TGCGAAAGCCATGACTCATTAGACGACATTGTTGATAAGATAGCTATCTCTGAGGT 1259
Query 1245 TCTCTCACCTAGAAAGGAAGAAAGTTTATTAGCTCTAGAATACGAACAAAGCTATAACTC 1304
||||||||||||||||||||||| |||| || ||| ||| ||||||||||||||||| |
Sbjct 1260 TCTCTCACCTAGAAAGGAAGAAACTTTACCAGGTCTGGAACACGAACAAAGCTATAACCC 1319
Query 1305 TTCTACAGCTATAACTCTTCTACAGGTGAAGAGAAAGCCGAGAATGAAGAAGACATGGAG 1364
|||||||| | | | | ||||||||||||||| ||||||||||||
Sbjct 1320 TTCTACAG--GT-A------T-----T---GAGAAAGCCGAGAAT---GAAGACATGGAG 1359
Query 1365 ATTAGAACACCTTCAG-AAA-GAAGAAATTTTATCAGCTCCGGAACACGAACAAAGCTAT 1422
||||| | |||| ||| ||| ||||||| |||| |||||| ||| ||||||||||||||
Sbjct 1360 ATTAGCATACCTGCAGCAAAGGAAGAAACTTTACCAGCTCTAGAATACGAACAAAGCTAT 1419
Query 1423 AACTCTTCTACAGGTGATGAGAAAGCCGAGAATGAAGTCATGGAGATTATTAGCACACGT 1482
||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||| |
Sbjct 1420 AACTCTTATACAGGTAATGAGAGAGCCGAGAATGAAGTCATGGAG---ATTAGCACACCT 1476
Query 1483 AGAAAGGAAGAACCCTTATCAGCTCTGGAATACGAACAGAGCTTTAACTCTTCTATAGGT 1542
|||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||| | ||
Sbjct 1477 AGAAAGGACGAACCATTATCAGCTCTGGAATACGAACAAAGCTATAACTCTTCTACAAGT 1536
Query 1543 AATGAGAAAGCCGAGAATGAAGACATAGAGATTAGCACACCTACAGAAACGGAAAATGTT 1602
||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||
Sbjct 1537 AATGAGAAAGCCGAGAATGAAGATATGGAGATTAGCACACCTGCAGAAAAGGAAAATGTT 1596
Query 1603 AACTTATCTTTGAAAACAATAGATGTAGAGTTGTGTGGGAATGCTAAGCCTGAGACATAT 1662
|||||||||| ||| || | | |||| ||| |||||||||||||||||| |||
Sbjct 1597 GACTTATCTTT--AAA-AACA-A--TAGA----TGT--GAATGCTAAGCCTGAGACCTAT 1644
Query 1663 GAGCTAACTTTTAAGAATTCGGATTTGGAGAT-GGACCCATCAGTtgaagctgaagaatc 1721
||||||||| | ||||| |||||||||||||| || |||||||||||||||| |||||||
Sbjct 1645 GAGCTAACTCTAAAGAACTCGGATTTGGAGATAGG-CCCATCAGTTGAAGCTCAAGAATC 1703
Query 1722 acaggaatctgtgaaagaagacgaagaaatgaagaatgaagaaaggaaaatgaGTCCTTC 1781
||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 1704 ACAGGAATCTGTGAATGAAGAGGAACAAATGAAGAATGAAGAGAGGAAAATGAGTCCTTC 1763
Query 1782 CACAAAGCAAGCTGAGCAATGCTTAAATAAAGAAGAAAATGCTCAGTCAGAACAGCAATC 1841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 CACAAAGCAAGCTGAGCAATGCTTAAATAAAGAAGAAAATGCTCAGTCAGAACAGCAATC 1823
Query 1842 AACGGAAGACTGTGAATTGAATTCACTCCCTATTAATAACCAATCAGAAGCCACAGTCGA 1901
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1824 AACGGAAGACTGTGAATTGAATTCACTCCCTATTAATAACCAATCAGAAGCAACAGTCGA 1883
Query 1902 AGTGGAGTTAACACCCAATGATACTAAGTTAGATGAGGATGCGACATCTGGAGATAAGTG 1961
|||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1884 AGTGGAGTTAACACCCAACGATGCTAAGTTAGATGAGGATGCGACATCTAGAGATAAGTG 1943
Query 1962 GGAGAGAAAACAGCAACAAGAGGCTGATAAAGATTGTAACGAATCATCTGTCTGCAAAAA 2021
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 GGAGAGCAAACAGCAACAAGAGGCTGATAAAGATTGTAACGAATCATCTGTCTGCAAAAA 2003
Query 2022 TATTGGGACAGATGATAATGACAACGACACTTACATGGCTTTGAAAGAAAAAGTTAAGGA 2081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 TATTGGGACAGATGATAATGACAACGACACTTACATGGCTTTGAAAGAAAAAGTTAAGGA 2063
Query 2082 GATGCAGAAGAAAATTGAATACCTTATGAGCATGCACACAGCAGAACAACAACAGTCACC 2141
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2064 GATGCAGAAGAAAATTGAATACCTTATGAGCATGCACACAGCAGAACAACAACAATCACC 2123
Query 2142 CTCCTTCAGAAGAGAATAT-ATGAG-CC-C-AGAATGTTTTACTACCAAAAGAAGCCGAA 2197
||||||||||||||| | | | ||| || | ||||| ||||||| |||||||||||||||
Sbjct 2124 CTCCTTCAGAAGAGATT-TCAAGAGTCCTCCAGAATATTTTACTGCCAAAAGAAGCCGAA 2182
Query 2198 GTTGCAGAGAGAATCTCTTGAGTGTTAGATCTCCTCATTGGTTTGAGAATTTGGAAGGCA 2257
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2183 GTTGCAGAGAAAATCTCTTGAGTGTTAGATCTCCTCATTGGTTTGAGAGTTTGGAAGTTA 2242
Query 2258 ATAACAATACATCACCTGCCTGGAGGGTTATGCAGACAAAAGCTTCACCTGGAAGACCCA 2317
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 2243 GTAACAATACATCACCTACCTGGAGGGTTATGCAGACAAAAGCTTCTCCTGGAAGACCCA 2302
Query 2318 ACACTTCAAGCATTTCCTTTGATTCGGGGAGTTCTACCTCTATCGATACACGTAGCCTGA 2377
||||||| ||||||||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct 2303 ACACTTCGAGCATTTCCTTTGATTCAGGGAGTTCTACCTCCATTGATACGCGTAGCCTGA 2362
Query 2378 AAGACTATGATCCTGAGATGGGTAATAGCTTCCGTGAATTTGTAGCAGGGCTTGAAGAAA 2437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2363 AAGACTATGATCCTGAGATGGGCAATAGCTTCCGTGAATTTGTAGCAGGGCTTGAGGAAA 2422
Query 2438 TGGCAAAGAAGCATCACTCAATTGACTCGACACCGGAGCTAGATTATGGGATTCCATATG 2497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2423 TGGCAAAGAAGCATCACTCAATTGACTCGACACCGGAGCTAGATTATGGGATTCCATACG 2482
Query 2498 CCCCCACAAGAACCGAAAGATTGGAGATCAGACCGGACAGCCCTGCAAATAGCATTAGAG 2557
| ||||||| |||||||||| |||||||||||||||| ||||||||| ||||| ||||||
Sbjct 2483 CTCCCACAAAAACCGAAAGAATGGAGATCAGACCGGAAAGCCCTGCAGATAGCGTTAGAG 2542
Query 2558 GAAACGAGAATGCATTGCCAAATCCTCAGGA-A-A----------CCACAGATGCCACCA 2605
||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 2543 GAAACGAGAATGCATTGCCAAATCCTCAGGATATAAATAAAGAAACCACAGATGCCACCA 2602
Query 2606 ATAATCAATCAGAGAGAGAGCAGGCCGATGATTCGGTAGAAGAATCAAAACCTAAGGAAA 2665
||||||| ||| |||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 2603 ATAATCAGTCACAGAGAGAGCAGGTTGGTGATTCGGTAGAAGAAGCAAAACCTAAGGAAA 2662
Query 2666 CAGATTCCACAGAGGCTTCCCAGGAGAAACTACAGGTAGCTGCTAATGGACAATATTCAA 2725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2663 CAGATTCCACAGAGGCTTCCCAGGAGAAACTACAGGTAGCTGCTAATGGACAATATTCAA 2722
Query 2726 GCATTTCTTCAGACTTTGAGAGGCAGCAAAGGCAAATAATAGAGCTTTGGGCGGTTTGCA 2785
|| |||||||||||||||||| ||||||||| ||||||| ||||||||||| | ||||
Sbjct 2723 TCAGTTCTTCAGACTTTGAGAGACAGCAAAGGAAAATAATTGAGCTTTGGGCAGCATGCA 2782
Query 2786 ATGTACCACTGGTTCATAGAACCTACTTCTTCTTGCTCTTCAAAGGTGATCCTTCCGACT 2845
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2783 ATGTACCACTGGTTCACAGAACCTACTTCTTTTTGCTCTTCAAAGGTGATCCTTCAGACT 2842
Query 2846 ATGTTTATATGGAAGTCGAACTTAGAAGGCTATCTTTTCTGAAGCAGACGATATCTAATG 2905
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2843 ATGTTTATATGGAAGTTGAACTTCGAAGGCTATCTTTTCTGAAGCAGACGATATCTAATG 2902
Query 2906 ACATGGAAGCATCAAGGATACAAACAGTGAAGGCACTCACACGCGAGAAGGAATGGCTTT 2965
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2903 ACATGGAAACATCAAGGATGCAAACAGTGAAGGCACTCACACGCGAGAAGGAATGGATTT 2962
Query 2966 CCAAACAATTACCAAAGAAGTTTCCATGGAGCCAAAGAATAGAGCTTTACCAAAAATGGG 3025
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2963 CCAAACAATTACCAAAGAAGTTTCCATGGAACCAAAGAATAGGGCTTTACCAAAAATGGG 3022
Query 3026 GAGTGGAGGTGAACTCAAAGCAGAGAAGCCTGCAAGTGGCGCACAAGCTGTGGACCAACA 3085
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3023 GCGTGGAGGTGAACTCAAAGCAGAGAAGCCTGCAAGTGGCGCACAAGCTGTGGACCAACA 3082
Query 3086 CCCAAGATATGGAACACATAAAAGAAAGTGCTTCTCTTGTGGCTAAGCTGCTTGGATTTG 3145
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3083 CCCAAGATATGGACCACATAAAAGAAAGTGCTTCTCTTGTGGCTAAGCTGCTTGGATTTG 3142
Query 3146 TTGAGCCAAGTCGGATGCCAAAGGAAATGTTTGGCCTCAGCTTGTTACCTAGAACTGAGA 3205
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 3143 TTGAGCCAAGTCGAATGCCGAAGGAAATGTTTGGCCTCAGCTTGTTACCTAGAACCGAAA 3202
Query 3206 ACGTAAAATCATCTGGCTGGAGATTTACCAAATCATTCTCTGGTATACGCTTGACCAGAT 3265
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3203 ACGTAAAATCATCTGGCTGGAGATTTACCAAATCATTCTCTGCTATACGCTTGACCAGAT 3262
Query 3266 GA 3267
||
Sbjct 3263 GA 3264
Score = 156 bits (84), Expect = 2e-36
Identities = 177/217 (82%), Gaps = 25/217 (12%)
Strand=Plus/Plus
Query 1257 AAAGGAAGAAAGTTTATTAGCTCTAGAATACGAACAAAGCTATAACTCTTCTACAGCTAT 1316
||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1377 AAAGGAAGAAACTTTACCAGCTCTAGAATACGAACAAAGCTATAACTCTTATACAGGTA- 1435
Query 1317 AACTCTTCTACAGGTGAAGAGAAAGCCGAGAATGAAGAAGACATGGAGATTAGAACACCT 1376
| | | | |||| ||||||||||||| |||||||||||| ||||||
Sbjct 1436 A--T--------G---A-GAGA--GCCGAGAATGAAGT---CATGGAGATTAGCACACCT 1476
Query 1377 TCAGAAAGAA-GAAATTTTATCAGCTCCGGAACACGAACAAAGCTATAACTCTTCTACAG 1435
|||||| | ||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1477 --AGAAAGGACGAACCATTATCAGCTCTGGAATACGAACAAAGCTATAACTCTTCTACAA 1534
Query 1436 GTGATGAGAAAGCCGAGAATGAAG-TCATGGAGATTA 1471
|| ||||||||||||||||||||| | ||||||||||
Sbjct 1535 GTAATGAGAAAGCCGAGAATGAAGAT-ATGGAGATTA 1570
Score = 82.4 bits (44), Expect = 3e-14
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1250 CACCTAGAAAGGAAGAAAGTTTATTAGCTCTAGAATACGAACAAAGCTATAACTCTTCTA 1309
||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 1472 CACCTAGAAAGGACGAACCATTATCAGCTCTGGAATACGAACAAAGCTATAACTCTTCTA 1531
Query 1310 CA 1311
||
Sbjct 1532 CA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162540895320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5