BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494789
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42450.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1768 0.0
> AT5G42450.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:16977297-16979016 FORWARD LENGTH=1720
Length=1720
Score = 1768 bits (957), Expect = 0.0
Identities = 1131/1217 (93%), Gaps = 4/1217 (0%)
Strand=Plus/Plus
Query 1 ATTGTTATGCGTTAAAGATTGGACTTGCATCGAATGTGTTTGTGGGTAGTGCGGTTTTGA 60
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 347 ATTGTTATGCGTTAAAGATGGGACTTGCGTCGAATGTGTTTGTTGGTAGTGCGGTTTTGA 406
Query 61 ACTGTTATGTGAAGCTGAGTGCGTTAACAGATGCTCGTAGAAGTTTCGATGACACTAGAG 120
||||||||||||| |||||| |||| ||||||||||||||| |||| |||||||||||||
Sbjct 407 ACTGTTATGTGAAACTGAGTACGTTGACAGATGCTCGTAGATGTTTTGATGACACTAGAG 466
Query 121 ACCCAAACATAGTTTCTATTACCAATTTGATTAGTGGGTACCTTAAGAAACATGAATTTG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 ACCCAAACGTAGTTTCTATTACCAATTTGATTAGTGGGTACCTTAAGAAACATGAATTTG 526
Query 181 AGGAAGCCCTTTCGTTGTTTAGAACAATGCCGGAGCGAAGTGTTGTTACTTGGAATGCAG 240
| ||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 527 AAGAAGCTCTTTCGTTGTTTAGAGCAATGCCTGAGAGAAGTGTTGTTACTTGGAATGCAG 586
Query 241 TGATTGGAGGGTTTAGCCAAACGGGGCAGAACGAAGAAGCTGTGAATACGTTTGTGGATA 300
| ||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 587 TTATTGGAGGGTTTAGCCAGACGGGGCGGAACGAAGAGGCTGTGAATACTTTTGTGGATA 646
Query 301 TGTTAAGGGAAGGTTTGGTGCTGCCTAACGAGTCAACCTTCCCTTCTACTATAACAGCCA 360
|||||||||||||| ||||| | |||||||| ||||||||||||| | ||||||||||||
Sbjct 647 TGTTAAGGGAAGGTGTGGTGATACCTAACGAATCAACCTTCCCTTGTGCTATAACAGCCA 706
Query 361 TATCTAATATAGCTTCTCATGGTGCTGGTAAAAGTATTCACGCTTGCGCAATAAAGTTCT 420
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 707 TATCTAATATAGCTTCTCATGGTGCTGGTAAGAGTATTCACGCCTGCGCTATAAAGTTCT 766
Query 421 TGGAGAAGCGATTCAATGTTTTTGTTGGGAATTCTCTTATTAGCTTTTACTCAAAATGTG 480
||| ||||||||||||||| |||||| |||| ||||| || || ||||||||||||||||
Sbjct 767 TGGGGAAGCGATTCAATGTCTTTGTTTGGAACTCTCTGATCAGTTTTTACTCAAAATGTG 826
Query 481 GTAACATGGAAGATAGTCTTCTGGCTTTTAACAAGCTCCAAGAAGAACAACGGAACATTG 540
| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 827 GGAACATGGAAGATAGTCTTCTGGCTTTCAACAAGCTCGAAGAAGAACAACGGAACATTG 886
Query 541 TATCTTGGAACTCTATGATATGGGGTTATGCGCACAACGGAAGAGGAGAAGAAGCTGTAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TATCTTGGAACTCTATGATATGGGGTTATGCGCACAACGGAAGAGGAGAAGAAGCTGTAG 946
Query 601 CTATGTTTGAGAAAATGATCAAAGACACAAACCTGAAACCAAACAATGTGACACTTCTTG 660
| ||||||||||||||| | |||||||||||||||| ||||||||| |||||| | ||||
Sbjct 947 CCATGTTTGAGAAAATGGTTAAAGACACAAACCTGAGACCAAACAACGTGACAATCCTTG 1006
Query 661 GACTATTATTTGCGTGTAACCATGCAGGCCTGATACAAGAAGGATACACGTATTTTAACA 720
|| |||||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||
Sbjct 1007 GAGTATTATTTGCGTGTAACCATGCGGGCCTAATACAAGAAGGGTACATGTATTTTAACA 1066
Query 721 AAGCGGTGAATGATTATGATGATCCAAACCTGA-TACAACCAGAGCACTATGCTTGTATG 779
|||| |||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct 1067 AAGCTGTGAATGATTATGATGATCCAAACCT-ACTAGAACTGGAGCACTATGCTTGTATG 1125
Query 780 GTGGATATGCTCTCTCGGTCAGGCCGTTTCAAAGAAGCTGAGGAGCTTATTAAAAGTATG 839
||||||||||| ||| |||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 1126 GTGGATATGCTTTCTAGGTCCGGCCGTTTCAAAGAAGCAGAAGAGCTTATTAAAAGTATG 1185
Query 840 CCTCTTGACCCGGGAATCGGGTTTTGGAAGGCATTGCTTGGGGGATGCCAGATTCACTCA 899
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CCTCTTGACCCAGGAATCGGGTTTTGGAAGGCATTGCTTGGGGGATGCCAGATTCACTCA 1245
Query 900 AACAAGCGTCTGGCTAAATTAGCGGCGTCTAAGATCTTGGAGAT-GGATCCCAGAGATGT 958
||||||||||||||||||||||||||||| || |||||||| || |||||| ||||||||
Sbjct 1246 AACAAGCGTCTGGCTAAATTAGCGGCGTCAAAAATCTTGGA-ATTGGATCCTAGAGATGT 1304
Query 959 TTCATCATACGTTATGCTTTCAAATGCTTACTCTGCTTTGGAAAACTGGCAGGATGTGTC 1018
|||||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||
Sbjct 1305 TTCATCATACGTAATGCTTTCAAATGCTTATTCTGCTATGGAAAACTGGCAGAATGTGTC 1364
Query 1019 ACTAATACGGAGGAAAATGAAGGAGACGGGTTTAAAGCGTTTTACTGGATGTAGTTGGAT 1078
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1365 GCTGATACGGAGGAAAATGAAGGAGACTGGTTTAAAGCGTTTTACGGGATGTAGTTGGAT 1424
Query 1079 TGAAGTTAAAGGCCAAGTTCGTGTCTTTGTGAATGCTGACAAGAACAACGAACTTAAGGA 1138
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TGAAGTTAGAGACCAAATTCGTGTCTTTGTGAATGCTGACAAGAACAACGAACTTAAGGA 1484
Query 1139 TGAAGTCTATAGGATGTTGGCATTTATTACTCAACATCTTGAGGAAGATGAATGTTGGGA 1198
|||||||||||||||||||||| || || ||||||||||||| ||| ||||||||||| |
Sbjct 1485 TGAAGTCTATAGGATGTTGGCACTTGTTTCTCAACATCTTGAAGAAAATGAATGTTGGAA 1544
Query 1199 AGACTTATGAATGCAAC 1215
|||||| ||||| ||||
Sbjct 1545 AGACTTGTGAATACAAC 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5