BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494794

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42410.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   510    3e-144


> AT5G42410.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr5:16964764-16965099 FORWARD LENGTH=336
Length=336

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 318/338 (94%), Gaps = 4/338 (1%)
 Strand=Plus/Plus

Query  1    ATGAGAAGCGTGGTGAAGAAGTTACTATGGTGCGGAGCGAAGAACAATGCTTCTTCGAGA  60
            ||||||| | ||||||||||| |||||||||||||||||||||||| | | |||||||||
Sbjct  1    ATGAGAACCTTGGTGAAGAAGCTACTATGGTGCGGAGCGAAGAACATTTCATCTTCGAGA  60

Query  61   ACATCGGCATTACCAGAAGAAGGGAGAGTTCGGGTTTTCGTAGGTAAAGATAGAGAGAGT  120
            ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct  61   ACATCGGCATTACCAGAAGAAGGAAGAGTTCGGGTTTACGTAGGTAAAGATAAAGAGAGT  120

Query  121  CAATGCAAGCTAGAAGTTGAGGCTAATTTGCTAAACCATCCAATGTTGGAAGATCTATTG  180
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  121  CAATGCAAGCTAGAAGTTGAAGCTAATTTGCTAAACCACCCAATGTTGGAAGATCTATTG  180

Query  181  AGGCTGTCTGAGGAAGAATTCGGACACTCGTATGAAGGAGCTTTGAGGATTGCTTGCGAG  240
            ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  181  AGGTTGTCTGAGGAAGAATTCGGACACTCGTACGAAGGAGCCTTGAGGATTGCTTGCGAG  240

Query  241  ATTGATGTCTTCATCAAACTGGTTAATCTACACAAAACAACTAATCATCATAACAATTCT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  241  ATTGATGTCTTCATCAAACTGGTTAATCTACACAAAACAACTAATCATCATAACAATTC-  299

Query  301  C-TTTG-TTGTAACAATAATTCCACAAAATTATCGTAG  336
            | |||| || | ||||||||||||||||||||| ||||
Sbjct  300  CGTTTGCTT-TCACAATAATTCCACAAAATTATTGTAG  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5