BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494800
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42330.1 | Symbols: | unknown protein; Has 35333 Blast hits... 1031 0.0
> AT5G42330.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16926608-16927503
FORWARD LENGTH=815
Length=815
Score = 1031 bits (558), Expect = 0.0
Identities = 688/749 (92%), Gaps = 15/749 (2%)
Strand=Plus/Plus
Query 1 TCGAAATCTCTTGAAGAAGCTTTTTGGCGATGTCGAAGATGAGATCTTACCTGAAACCAC 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 36 TCGAAATCTCTTGAAGAAGCTTTTTGGCTATGTCGAAGATGAGATCTTACCTGAAACCAC 95
Query 61 CTCTTCCCAAATCTCCGATCCGTCTCCGATCACGTCAAGTCCTTCACTCATCTCTCCAAA 120
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 96 CGCTTCCCAAATCTCCGATCCGTCTCCGTTCACGTCAAGTCCTTCACTCTTCTCTCCAAA 155
Query 121 CACCATCACCAGGTTTTC-AGAAGCCGGGACGGCGATTGAGTGACGTAGATCTAAACCCT 179
| ||||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 156 CCCCATCGCCAGGTTTTCTA-AAGCCGGGACGAAGATTGAGTGACGTAGATCTAAACCCT 214
Query 180 AAACCCCAATTCGAATACTCATCAATCTCTAGCGAGATACATGCTTTAGCAAAGATGGTG 239
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 AAACCCCAAATCAAATACTCATCAATCTCTAGCGAGATACATGCTTTAGCAAAGATGGTG 274
Query 240 AAAGACGAGTTTGCGGAAGAAGAGAACCGAAAAAAGTCTTCGAATTTGGAGAGTTTGGCG 299
|||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||
Sbjct 275 AAAGACGAGTTTGCTGAAGAAGAGGATCGCAAAAAGTCTTCGAATTTGGAGAGTTTGGCA 334
Query 300 ACGAATTCGGTTCCGGTATTCGAGAGAGGGAGGTTTTACGAGGAGTATTCGGCTAAGA-G 358
| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 335 AAGAATTCAGTTCCGTTATTCGAGAGAGGGAGGTTTTACGAGGAGTATTCGGCTAA-ACG 393
Query 359 GAACGAGCGATTGAGGAGGAAGAAAGGAGAAGAAGCTGTTGAAGGAGGAGTTGTGAAAGG 418
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 394 GAACGAGAGATTGAGGAGGAAGAAAGGAGAAGAAGCTGTAGAAGGAGGAGTTGTGAAAGG 453
Query 419 AACTCCTTATAATCTTGGTGTGAATCATGAACCGATGACGAATAAGCGAAGAGGAACGGC 478
||||||||||||||| || || |||||||||||||||||||||||| || ||||||||||
Sbjct 454 AACTCCTTATAATCTCGGAGTTAATCATGAACCGATGACGAATAAGAGACGAGGAACGGC 513
Query 479 GAAGAAGGAGAGTATTAAGAAGACGGTGGTATCGATGGTTGAGACTAGTA-TA--CCGAG 535
|||||||||||| || |||||||||||||| || |||||||||| ||||| || |||||
Sbjct 514 GAAGAAGGAGAGCATCAAGAAGACGGTGGTGTCTATGGTTGAGAGTAGTAGTATACCGAG 573
Query 536 GTATTCGT-TGAGGAGTATGACCAAGGAGAATAGGAAGCCGCCGATTCCGCTTAATGTCG 594
|||||| | ||||||||||| | ||||||||||||||||| ||| |||||||||||||||
Sbjct 574 GTATTC-TCTGAGGAGTATGGCTAAGGAGAATAGGAAGCCACCGCTTCCGCTTAATGTCG 632
Query 595 CTGTAAGTGCGATGAAGACTGTTACTACTCGAAGAGG-TAGGAGAATCTGAAACTGAGGT 653
|||||||||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 633 CTGTAAGTGCGATGAAGAGTGTTACTACACGAA-AGGGTAGGAGAATCTGAAACTGAGGT 691
Query 654 GATGTTTT-GTAAGGAATTGAAATTTGGGGATTTGGTTTCTTGAACTT-ATTTTGGTATT 711
| |||||| ||| | || |||| | | |||||||||||||||| || |||||||||||
Sbjct 692 G-TGTTTTTGTATGAAACCGAAAACTAGAGATTTGGTTTCTTGAAATTTATTTTGGTATT 750
Query 712 GTTTT-GCTTGTGGATTTCGGTTAAATCC 739
||||| |||||||||||||| ||||||||
Sbjct 751 GTTTTTGCTTGTGGATTTCGATTAAATCC 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35867180958
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5