BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494804
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42250.1 | Symbols: | Zinc-binding alcohol dehydrogenase fa... 2124 0.0
> AT5G42250.1 | Symbols: | Zinc-binding alcohol dehydrogenase
family protein | chr5:16894009-16897620 FORWARD LENGTH=1421
Length=1421
Score = 2124 bits (1150), Expect = 0.0
Identities = 1335/1423 (94%), Gaps = 18/1423 (1%)
Strand=Plus/Plus
Query 1 TATAGAGAGAAGCTCTTACAAATTGGGACTCT---C---aaaa-a-a-a--aaa-aaaaC 48
|||| |||||||||||||||||||| |||||| | |||| | | | ||| |||||
Sbjct 1 TATACAGAGAAGCTCTTACAAATTGTGACTCTCACCAGAAAAACACACACCAAACAAAAC 60
Query 49 ACACCAAAGAA-A-AGAGATGGAAAACGGAAACTCCTCCGGCGACAACAAGTCTTCACGT 106
| | |||| || | ||||||||||||||||||||||||| |||||||||| ||||||| |
Sbjct 61 AAAACAAAAAACAGAGAGATGGAAAACGGAAACTCCTCCAGCGACAACAAATCTTCACAT 120
Query 107 AAGCCGATCCGATGCAAAGCGGCGGTTAGTAGGAAGGCCGGAGAGCCGTTGGTGATGGAA 166
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AAACCGATCCGATGCAAAGCGGCGGTTAGTAGGAAGGCTGGAGAGCCGTTGGTGATGGAA 180
Query 167 GAAATCATGGTGGCGCCGCCGCAGCCTTACGAGGTTCGGATCCGAATCATCTGCACCGCG 226
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 181 GAAATCATGGTGGCGCCGCCGCAGCCTTTCGAGGTTCGGATTCGAATCATCTGCACCGCG 240
Query 227 CTATGTCACAGTGACGTCACTTTCTGGAAACTCCAAGTTCCTCCAGCCTGCTTTCCGAGG 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTATGTCACAGTGACGTCACTTTCTGGAAACTCCAAGTTCCTCCAGCCTGCTTTCCGAGG 300
Query 287 ATTCTAGGCCATGAGGCAATAGGTGTAGTAGAAAGTGTGGGTGAAAATGTGAAGGAAGTG 346
|| |||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 301 ATACTAGGCCACGAGGCAATAGGCGTAGTGGAAAGTGTTGGTGAAAATGTGAAGGAAGTG 360
Query 347 GTAGAAGGAGACACCGTACTACCAACGTTCATGCCTGACTGTGGTGACTGTGTTGATTGC 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTAGAAGGAGACACCGTACTACCAACGTTCATGCCTGACTGTGGTGACTGTGTTGATTGC 420
Query 407 AAATCTCACAAAAGCAATTTATGTAGTAAATTCCCCTTCAAAGTATCGCCTTGGATGCCA 466
||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||||||||||
Sbjct 421 AAATCTCACAAAAGCAACTTATGTAGCAAATTTCCTTTCAAGGTATCCCCTTGGATGCCA 480
Query 467 AGATACGAAAATTCCAGCAGATTCACCGATCTCAATGGCCAAACTCTCTTTCATTTCTTG 526
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 481 AGATACGATAATTCCAGCAGATTCACCGACCTCAATGGCGAAACTCTCTTTCATTTCTTG 540
Query 527 AACGTCTCCAGCTTCAGCGAATACACCGTTCTTGATGTCGCTAACATTGTTAAGATCGAT 586
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 541 AACGTCTCCAGCTTCAGCGAATACACGGTTCTTGATGTCGCTAACGTTGTTAAGATTGAT 600
Query 587 TCTTCGATTCCTCCTAGTCGTGCTTGTCTCTTAAGCTGTGGAGTCTCCACCGGTGTTGGT 646
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 601 TCTTCGATTCCTCCTAGTCGTGCTTGCCTCCTAAGCTGCGGAGTCTCCACCGGTGTTGGT 660
Query 647 GCTGCTTGGGAGACCGCCAAAGTTGAACAAGGATCGACCGTTGTGATTTTCGGACTTGGT 706
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 661 GCTGCTTGGGAGACCGCCAAAGTTGAAAAAGGATCAACCGTTGTGATTTTCGGACTTGGT 720
Query 707 TCTATCGGATTAGCGGTTGCAGAGGGTGCAAGACTTTGTGGTGCCTCTAGAATCATTGGT 766
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 TCTATCGGATTAGCGGTTGCAGAGGGTGCGAGACTTTGTGGTGCCTCTAGAATCATTGGT 780
Query 767 GTGGATATAAACCCTGCCAAATTCCAAGTTGGCCAGAATTTTGGAATTACCGAGTTTGTA 826
||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 781 GTGGATATAAACCCTACCAAATTCCAAGTTGGCCAGAAATTTGGAGTTACCGAGTTTGTA 840
Query 827 AACTCTATGACATGCGAGAAAAAGAGTGTTAGCGAGGTGATCAATGAGATGACTGGTGGG 886
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 841 AACTCTATGACATGTGAGAAAAACCGTGTTAGCGAGGTGATCAATGAGATGACTGATGGG 900
Query 887 GGAGCAGACTATTGTTTCGAGTGTGTTGGAAGTAGCTCTTTGGTTCAAGAAGCTTATGCT 946
||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 901 GGAGCGGACTATTGCTTCGAATGTGTTGGAAGTAGTTCTTTGGTTCAAGAAGCTTATGCT 960
Query 947 TGTTGCAGACAGGGATGGGGAAAGACGATAACTTTAGGGGTGGACAAGCCGGGTTCACAA 1006
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 TGCTGTAGACAGGGATGGGGAAAGACAATAACTTTAGGGGTGGACAAGCCGGGTTCACAA 1020
Query 1007 ATATGTTTAGACTCCTTTGATGTTCTTCACCATGGGAAGATTCTGATGGGTTCATTGTTT 1066
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 ATATGTTTAGATTCGTTTGATGTTCTTCACCATGGGAAGATTCTGATGGGTTCGTTGTTT 1080
Query 1067 GGAGGTTTGAAGGCTAAAACACACATTCCTCTTCTTCTAAAACGCTATTTGAGCAATGAG 1126
|||||||| |||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 1081 GGAGGTTTAAAGGCTAAAACACACATTCCAATTCTTCTTAAACGCTACTTGAGCAATGAA 1140
Query 1127 CTTGAATTGGATAAGTTTGTGACACATGAGATGAAATTCGAGGAGATCAACGACGCATTC 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTGAATTGGATAAGTTTGTGACACATGAGATGAAATTCGAGGAGATCAACGACGCATTC 1200
Query 1187 CAGCTACTTCTTGAAGGGAAATGCATCAGATGTGTCTTGTGGATGGGCTAAGTGAATTGA 1246
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1201 CAGCTACTTCTTGAAGGGAAATGCATCAGGTGTGTCTTATGGATGGGCTAAGTGAATTGA 1260
Query 1247 CTTATTTTATCTTTCCATCTTTTGCATCAATTTCATATGTTTCATGTAAAACTATTTTTA 1306
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1261 CTTATTTTATCTTTCCATCTTTTGCATCAATTTCATATGTTTCATGTTTAACTATTTTTA 1320
Query 1307 TTGGTTTGTAATCAAAACAAGCAAATGCCAAAGCG-CAAGCAAAATAAAATGTTAATGGA 1365
||||||||||||||||||||||||||||||||| | || ||||||||||| || |||| |
Sbjct 1321 TTGGTTTGTAATCAAAACAAGCAAATGCCAAAGTGACA-GCAAAATAAAAAGTCAATGAA 1379
Query 1366 CTGTTATGAAAATAAGCAAAGGACAAGAAAAT-TTTTATTCAT 1407
||| ||||||||||||||||||||||||| | |||| |||||
Sbjct 1380 TTGTAATGAAAATAAGCAAAGGACAAGAAATTGTTTT-TTCAT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5