BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494805
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42242.1 | Symbols: LCR57 | low-molecular-weight cysteine-ri... 483 7e-136
> AT5G42242.1 | Symbols: LCR57 | low-molecular-weight cysteine-rich
57 | chr5:16891188-16891909 REVERSE LENGTH=363
Length=363
Score = 483 bits (261), Expect = 7e-136
Identities = 341/377 (90%), Gaps = 16/377 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAGGACAAGTACTTCACTTCTATTCCTTG-TTAGCTTAGTTATCATATTTGCCAC 59
||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
Sbjct 1 ATGGAGAGGACAAGTACTTCACTTCTATTCC-TGCTTAGCTTACTTATCATATTTGCCTC 59
Query 60 AGTTGTGAATCAGATAAGAGCACAAACATGTGACGACAAACTAGGCTCTTGTGAAAATTG 119
|| ||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||
Sbjct 60 AGCTGTGAATCAGATAAGAGCACAGACATGTGACGAGAACCTAAGCTCTTGTGAAAATTG 119
Query 120 CGACCAAAGGTGCAAGGCCAAACACGGACCATCGTCCGTAAGCAAATGTAACGGTCCGGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGACCAAAGGTGCAAGGCCAAACACGGACCATCGTCCGTAAGCAAATGTAACGGTCCGGA 179
Query 180 TGGGATGTGCAAGTGCACCTACGAATGTGCGTCATTTAAACCAGCCAAAGTGTGCGTCGG 239
||||| |||| | | | | | || | |||||||||||||||||| ||||| ||||
Sbjct 180 TGGGACGTGC--G-G-A--T--G--TGC-C-TCATTTAAACCAGCCAAACTGTGCATCGG 227
Query 240 TGCGACTGATATGTGCACTGACACTTGTCCT-CAGAGTTGTTGTGATAGACAATGCGCAA 298
||||||||||||||||||||| | |||||| || ||||||||||||||||||||||| |
Sbjct 228 TGCGACTGATATGTGCACTGATAAATGTCCTACA-AGTTGTTGTGATAGACAATGCGCTA 286
Query 299 TAAAATATAAGAATGGACATGGGGGTTGTGTCAACTATGCTGGTTATAGGATGTGCATAT 358
||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |
Sbjct 287 TAAAATATAAGAATGGAAAAGGGGGTTGTGTCGACTATGCTGGTTATAGGATGTGCATTT 346
Query 359 GCGAGTACTCTTGCTAA 375
|||||||| ||||||||
Sbjct 347 GCGAGTACACTTGCTAA 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5